smalt-examples - ppc64el
Documentation
./doc/test/results_split_test.py
./doc/test/ioform_test.py
./doc/test/testdata.py
./doc/test/SAM.py
./doc/test/bam_cigar_test.py
./doc/test/formats.py
./doc/test/xali_test.py
./doc/test/data/hs37chrXtrunc.fa.gz
./doc/test/data/cigar_read1.fq
./doc/test/data/Makefile.in
./doc/test/data/gen1l75i300e0_1.fq.gz
./doc/test/data/sequence_test_3.fq.gz
./doc/test/data/contigs.fa.gz
./doc/test/data/Makefile.am
./doc/test/data/sequence_test_4.fq.gz
./doc/test/data/cigar_ref.fa.gz
./doc/test/data/hs37l100i300e05q_trunc_nonam_1.fq.gz
./doc/test/data/Makefile
./doc/test/data/gen1l100i500e1_2.fq
./doc/test/data/gen1l100i500e1_1.fq
./doc/test/data/sequence_test_1.fa.gz
./doc/test/data/hs37l100i300e05q_trunc.sam.gz
./doc/test/data/gen1l75i300e0_2.fq.gz
./doc/test/data/genome_1.fa.gz
./doc/test/data/cigar_read2.fq
./doc/test/data/hs37l100i300e05q_trunc_nonam_2.fq.gz
./doc/test/data/hs37l100i300e05q_trunc.bam
./doc/test/data/sequence_test_2.fa.gz
./doc/test/ouform_cigar_test.py
./doc/test/sample_test.py
./doc/test/splitReads_test.py
./doc/test/mthread_test.py
./doc/test/cigar_test.py
Binaries
simqual
compile units
simqual.c
Gimple
./simqual.c.004t.gimple
GKD
./simqual.o.gkd
OBJ
obj: ./simqual.o
basqual.c
Gimple
./basqual.c.004t.gimple
GKD
./basqual.o.gkd
OBJ
obj: ./basqual.o
diffstr.c
elib.c
Gimple
./elib.c.004t.gimple
GKD
./elib.o.gkd
OBJ
obj: ./elib.o
filio.c
Gimple
./filio.c.004t.gimple
GKD
./filio.o.gkd
OBJ
obj: ./filio.o
sequence.c
Gimple
./sequence.c.004t.gimple
GKD
./sequence.o.gkd
OBJ
obj: ./sequence.o
includes
simqual.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
../headers/../src/elib.h
../headers/../src/sequence.h
../headers/../src/diffstr.h
./basqual.h
../headers//usr/include/ctype.h
../headers//usr/include/string.h
../headers//usr/include/powerpc64le-linux-gnu/bits/mathcalls.h
basqual.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers/../src/elib.h
../headers/../src/filio.h
../headers/../src/sequence.h
./basqual.h
../headers//usr/include/stdlib.h
diffstr.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers/../src/elib.h
../headers/../src/diffstr.h
../headers//usr/include/ctype.h
elib.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./elib.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
filio.c
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers//usr/include/string.h
./elib.h
sequence.c
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./filio.h
./elib.h
./sequence.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
libraries
../libs/lib/powerpc64le-linux-gnu/libm.so.6
../libs/lib/powerpc64le-linux-gnu/libz.so.1
../libs/lib/powerpc64le-linux-gnu/libc.so.6
manual
readstats
compile units
readstats.c
Gimple
./readstats.c.004t.gimple
GKD
./readstats.o.gkd
OBJ
obj: ./readstats.o
elib.c
Gimple
./elib.c.004t.gimple
GKD
./elib.o.gkd
OBJ
obj: ./elib.o
sequence.c
Gimple
./sequence.c.004t.gimple
GKD
./sequence.o.gkd
OBJ
obj: ./sequence.o
filio.c
Gimple
./filio.c.004t.gimple
GKD
./filio.o.gkd
OBJ
obj: ./filio.o
includes
readstats.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers/../src/elib.h
../headers//usr/include/stdint.h
../headers/../src/sequence.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
elib.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./elib.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
sequence.c
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./filio.h
./elib.h
./sequence.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
filio.c
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers//usr/include/string.h
./elib.h
libraries
../libs/lib/powerpc64le-linux-gnu/libz.so.1
../libs/lib/powerpc64le-linux-gnu/libc.so.6
manual
splitmates
compile units
splitmates.c
Gimple
./splitmates.c.004t.gimple
GKD
./splitmates.o.gkd
OBJ
obj: ./splitmates.o
elib.c
Gimple
./elib.c.004t.gimple
GKD
./elib.o.gkd
OBJ
obj: ./elib.o
sequence.c
Gimple
./sequence.c.004t.gimple
GKD
./sequence.o.gkd
OBJ
obj: ./sequence.o
filio.c
Gimple
./filio.c.004t.gimple
GKD
./filio.o.gkd
OBJ
obj: ./filio.o
includes
splitmates.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers/../src/elib.h
../headers/../src/sequence.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
elib.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./elib.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
sequence.c
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./filio.h
./elib.h
./sequence.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
filio.c
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers//usr/include/string.h
./elib.h
libraries
../libs/lib/powerpc64le-linux-gnu/libz.so.1
../libs/lib/powerpc64le-linux-gnu/libc.so.6
manual
trunkreads
compile units
trunkreads.c
Gimple
./trunkreads.c.004t.gimple
GKD
./trunkreads.o.gkd
OBJ
obj: ./trunkreads.o
elib.c
Gimple
./elib.c.004t.gimple
GKD
./elib.o.gkd
OBJ
obj: ./elib.o
sequence.c
Gimple
./sequence.c.004t.gimple
GKD
./sequence.o.gkd
OBJ
obj: ./sequence.o
filio.c
Gimple
./filio.c.004t.gimple
GKD
./filio.o.gkd
OBJ
obj: ./filio.o
includes
trunkreads.c
../headers//usr/include/stdlib.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers/../src/elib.h
../headers//usr/include/stdint.h
../headers/../src/sequence.h
../headers//usr/include/stdio.h
elib.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./elib.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
sequence.c
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./filio.h
./elib.h
./sequence.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
filio.c
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers//usr/include/string.h
./elib.h
libraries
../libs/lib/powerpc64le-linux-gnu/libz.so.1
../libs/lib/powerpc64le-linux-gnu/libc.so.6
manual
mixreads
compile units
mixreads.c
Gimple
./mixreads.c.004t.gimple
GKD
./mixreads.o.gkd
OBJ
obj: ./mixreads.o
elib.c
Gimple
./elib.c.004t.gimple
GKD
./elib.o.gkd
OBJ
obj: ./elib.o
sequence.c
Gimple
./sequence.c.004t.gimple
GKD
./sequence.o.gkd
OBJ
obj: ./sequence.o
filio.c
Gimple
./filio.c.004t.gimple
GKD
./filio.o.gkd
OBJ
obj: ./filio.o
includes
mixreads.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers/../src/elib.h
../headers/../src/sequence.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
elib.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./elib.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
sequence.c
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./filio.h
./elib.h
./sequence.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
filio.c
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers//usr/include/string.h
./elib.h
libraries
../libs/lib/powerpc64le-linux-gnu/libz.so.1
../libs/lib/powerpc64le-linux-gnu/libc.so.6
manual
splitreads
compile units
splitreads.c
Gimple
./splitreads.c.004t.gimple
GKD
./splitreads.o.gkd
OBJ
obj: ./splitreads.o
elib.c
Gimple
./elib.c.004t.gimple
GKD
./elib.o.gkd
OBJ
obj: ./elib.o
sequence.c
Gimple
./sequence.c.004t.gimple
GKD
./sequence.o.gkd
OBJ
obj: ./sequence.o
filio.c
Gimple
./filio.c.004t.gimple
GKD
./filio.o.gkd
OBJ
obj: ./filio.o
includes
splitreads.c
../headers//usr/include/stdlib.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers/../src/elib.h
../headers/../src/sequence.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
elib.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./elib.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
sequence.c
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./filio.h
./elib.h
./sequence.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
filio.c
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers//usr/include/string.h
./elib.h
libraries
../libs/lib/powerpc64le-linux-gnu/libz.so.1
../libs/lib/powerpc64le-linux-gnu/libc.so.6
manual
smalt
compile units
smalt.c
Gimple
./smalt.c.004t.gimple
GKD
./smalt.o.gkd
OBJ
obj: ./smalt.o
menu.c
Gimple
./menu.c.004t.gimple
GKD
./menu.o.gkd
OBJ
obj: ./menu.o
threads.c
Gimple
./threads.c.004t.gimple
GKD
./threads.o.gkd
OBJ
obj: ./threads.o
infmt.c
Gimple
./infmt.c.004t.gimple
GKD
./infmt.o.gkd
OBJ
obj: ./infmt.o
results.c
Gimple
./results.c.004t.gimple
GKD
./results.o.gkd
OBJ
obj: ./results.o
resultpairs.c
Gimple
./resultpairs.c.004t.gimple
GKD
./resultpairs.o.gkd
OBJ
obj: ./resultpairs.o
report.c
Gimple
./report.c.004t.gimple
GKD
./report.o.gkd
OBJ
obj: ./report.o
rmap.c
Gimple
./rmap.c.004t.gimple
GKD
./rmap.o.gkd
OBJ
obj: ./rmap.o
insert.c
Gimple
./insert.c.004t.gimple
GKD
./insert.o.gkd
OBJ
obj: ./insert.o
score.c
Gimple
./score.c.004t.gimple
GKD
./score.o.gkd
OBJ
obj: ./score.o
diffstr.c
Gimple
./diffstr.c.004t.gimple
GKD
./diffstr.o.gkd
OBJ
obj: ./diffstr.o
alibuffer.c
Gimple
./alibuffer.c.004t.gimple
GKD
./alibuffer.o.gkd
OBJ
obj: ./alibuffer.o
alignment.c
Gimple
./alignment.c.004t.gimple
GKD
./alignment.o.gkd
OBJ
obj: ./alignment.o
sort.c
Gimple
./sort.c.004t.gimple
GKD
./sort.o.gkd
OBJ
obj: ./sort.o
array.c
Gimple
./array.c.004t.gimple
GKD
./array.o.gkd
OBJ
obj: ./array.o
interval.c
Gimple
./interval.c.004t.gimple
GKD
./interval.o.gkd
OBJ
obj: ./interval.o
hashidx.c
Gimple
./hashidx.c.004t.gimple
GKD
./hashidx.o.gkd
OBJ
obj: ./hashidx.o
hashhit.c
Gimple
./hashhit.c.004t.gimple
GKD
./hashhit.o.gkd
OBJ
obj: ./hashhit.o
segment.c
Gimple
./segment.c.004t.gimple
GKD
./segment.o.gkd
OBJ
obj: ./segment.o
elib.c
Gimple
./elib.c.004t.gimple
GKD
./elib.o.gkd
OBJ
obj: ./elib.o
filio.c
Gimple
./filio.c.004t.gimple
GKD
./filio.o.gkd
OBJ
obj: ./filio.o
sequence.c
Gimple
./sequence.c.004t.gimple
GKD
./sequence.o.gkd
OBJ
obj: ./sequence.o
includes
smalt.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
./elib.h
./threads.h
./sequence.h
./infmt.h
./interval.h
./hashidx.h
./score.h
./insert.h
./report.h
./results.h
./resultpairs.h
./rmap.h
./menu.h
../headers//usr/include/assert.h
../headers//usr/include/stdlib.h
menu.c
../headers//usr/include/stdlib.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
./elib.h
../headers//usr/include/stdint.h
./menu.h
../headers//usr/include/ctype.h
../headers//usr/include/string.h
threads.c
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/powerpc64le-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/powerpc64le-linux-gnu/bits/semaphore.h
../headers//usr/include/stdint.h
../headers//usr/include/libio.h
./elib.h
./threads.h
../headers//usr/include/stdio.h
../headers//usr/include/pthread.h
../headers//usr/include/semaphore.h
../headers//usr/include/stdlib.h
infmt.c
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers//usr/include/libio.h
./elib.h
../headers//usr/include/stdint.h
./sequence.h
./infmt.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
results.c
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers//usr/include/stdlib.h
./elib.h
./array.h
../headers//usr/include/stdint.h
./diffstr.h
./sequence.h
./report.h
./score.h
./alignment.h
./results.h
../headers//usr/include/powerpc64le-linux-gnu/bits/mathcalls.h
./sort.h
resultpairs.c
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers//usr/include/stdlib.h
./elib.h
./array.h
../headers//usr/include/stdint.h
./insert.h
./sequence.h
./report.h
./results.h
./resultpairs.h
../headers//usr/include/stdio.h
report.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./elib.h
./array.h
./sequence.h
./diffstr.h
./report.h
../headers//usr/include/stdlib.h
../headers//usr/include/ctype.h
rmap.c
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
../headers//usr/include/libio.h
./elib.h
./array.h
./sequence.h
./interval.h
./hashidx.h
./hashhit.h
./segment.h
./score.h
./alibuffer.h
./alignment.h
./results.h
./resultpairs.h
./rmap.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
insert.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./elib.h
./vdef.h
../headers//usr/include/stdint.h
./insert.h
../headers//usr/include/powerpc64le-linux-gnu/bits/mathcalls.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
score.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./elib.h
./sequence.h
./score.h
../headers//usr/include/stdlib.h
../headers//usr/include/powerpc64le-linux-gnu/bits/mathcalls.h
diffstr.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./elib.h
./diffstr.h
../headers//usr/include/ctype.h
alibuffer.c
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./alibuffer.h
./alibuffer_struct.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
./elib.h
alignment.c
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./elib.h
./sequence.h
./score.h
./diffstr.h
./alibuffer.h
./alibuffer_struct.h
./alignment.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/powerpc64le-linux-gnu/bits/mathcalls.h
sort.c
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers//usr/include/stdio.h
./elib.h
../headers//usr/include/stdlib.h
array.c
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
./array.h
./elib.h
interval.c
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers//usr/include/stdlib.h
../headers//usr/include/libio.h
./elib.h
./vdef.h
../headers//usr/include/stdint.h
./sequence.h
./interval.h
../headers//usr/include/stdio.h
hashidx.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
./elib.h
./filio.h
./sequence.h
./interval.h
./hashidx.h
../headers//usr/include/stdlib.h
hashhit.c
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers//usr/include/stdlib.h
../headers//usr/include/stdint.h
./elib.h
./sequence.h
./hashidx.h
./hashhit.h
./sort.h
../headers//usr/include/powerpc64le-linux-gnu/bits/mathcalls.h
segment.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./elib.h
./array.h
../headers//usr/include/stdint.h
./sequence.h
./hashhit.h
./segment.h
../headers//usr/include/stdlib.h
./sort.h
elib.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./elib.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
filio.c
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers//usr/include/string.h
./elib.h
sequence.c
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./filio.h
./elib.h
./sequence.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
libraries
../libs/lib/powerpc64le-linux-gnu/libm.so.6
../libs/lib/powerpc64le-linux-gnu/libpthread.so.0
../libs/lib/powerpc64le-linux-gnu/libz.so.1
../libs/lib/powerpc64le-linux-gnu/libc.so.6
manual
basqcol
compile units
basqcol.c
Gimple
./basqcol.c.004t.gimple
GKD
./basqcol.o.gkd
OBJ
obj: ./basqcol.o
basqual.c
Gimple
./basqual.c.004t.gimple
GKD
./basqual.o.gkd
OBJ
obj: ./basqual.o
elib.c
Gimple
./elib.c.004t.gimple
GKD
./elib.o.gkd
OBJ
obj: ./elib.o
filio.c
Gimple
./filio.c.004t.gimple
GKD
./filio.o.gkd
OBJ
obj: ./filio.o
sequence.c
Gimple
./sequence.c.004t.gimple
GKD
./sequence.o.gkd
OBJ
obj: ./sequence.o
includes
basqcol.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers/../src/elib.h
../headers/../src/sequence.h
./basqual.h
basqual.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers/../src/elib.h
../headers/../src/filio.h
../headers/../src/sequence.h
./basqual.h
../headers//usr/include/stdlib.h
elib.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./elib.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
filio.c
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers//usr/include/string.h
./elib.h
sequence.c
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./filio.h
./elib.h
./sequence.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
libraries
../libs/lib/powerpc64le-linux-gnu/libz.so.1
../libs/lib/powerpc64le-linux-gnu/libc.so.6
manual
fetchseq
compile units
fetchseq.c
Gimple
./fetchseq.c.004t.gimple
GKD
./fetchseq.o.gkd
OBJ
obj: ./fetchseq.o
elib.c
Gimple
./elib.c.004t.gimple
GKD
./elib.o.gkd
OBJ
obj: ./elib.o
sequence.c
Gimple
./sequence.c.004t.gimple
GKD
./sequence.o.gkd
OBJ
obj: ./sequence.o
filio.c
Gimple
./filio.c.004t.gimple
GKD
./filio.o.gkd
OBJ
obj: ./filio.o
includes
fetchseq.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers/../src/elib.h
../headers//usr/include/stdint.h
../headers/../src/sequence.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/ctype.h
elib.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./elib.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
sequence.c
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./filio.h
./elib.h
./sequence.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
filio.c
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers//usr/include/string.h
./elib.h
libraries
../libs/lib/powerpc64le-linux-gnu/libz.so.1
../libs/lib/powerpc64le-linux-gnu/libc.so.6
manual
simread
compile units
simread.c
Gimple
./simread.c.004t.gimple
GKD
./simread.o.gkd
OBJ
obj: ./simread.o
rsample.c
Gimple
./rsample.c.004t.gimple
GKD
./rsample.o.gkd
OBJ
obj: ./rsample.o
elib.c
Gimple
./elib.c.004t.gimple
GKD
./elib.o.gkd
OBJ
obj: ./elib.o
sequence.c
Gimple
./sequence.c.004t.gimple
GKD
./sequence.o.gkd
OBJ
obj: ./sequence.o
filio.c
Gimple
./filio.c.004t.gimple
GKD
./filio.o.gkd
OBJ
obj: ./filio.o
includes
simread.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
../headers/../src/elib.h
../headers/../src/sequence.h
../headers//usr/include/string.h
./rsample.h
../headers//usr/include/powerpc64le-linux-gnu/bits/mathcalls.h
rsample.c
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers/../src/elib.h
../headers//usr/include/stdlib.h
../headers//usr/include/powerpc64le-linux-gnu/bits/mathcalls.h
elib.c
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./elib.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
sequence.c
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/powerpc64le-linux-gnu/sys/types.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./filio.h
./elib.h
./sequence.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
filio.c
../headers//usr/include/powerpc64le-linux-gnu/bits/string3.h
../headers//usr/include/powerpc64le-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h
../headers//usr/include/powerpc64le-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers//usr/include/string.h
./elib.h
libraries
../libs/lib/powerpc64le-linux-gnu/libm.so.6
../libs/lib/powerpc64le-linux-gnu/libz.so.1
../libs/lib/powerpc64le-linux-gnu/libc.so.6
manual