seqan-apps - i386

Documentation

Binaries

test_index_fm

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test_index_fm.cpp

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test_index_fm.cpp

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demo_iterator

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iterator.cpp

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iterator.cpp

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demo_basic_metaprogramming_control

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metaprogramming_control.cpp

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metaprogramming_control.cpp

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demo_segmentalignment

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segmentalignment.cpp

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segmentalignment.cpp

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demo_tutorial_sequence_io_solution2

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solution2.cpp

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solution2.cpp

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demo_modifier_modified_string

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modified_string.cpp

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modified_string.cpp

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demo_sequence_string2

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string2.cpp

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string2.cpp

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demo_tutorial_sequence_io_solution4

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solution4.cpp

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solution4.cpp

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demo_tutorial_sequences_segments_assignment_solution

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segments_assignment_solution.cpp

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segments_assignment_solution.cpp

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demo_tutorial_rnaseq_genequant_solution4

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genequant_solution4.cpp

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genequant_solution4.cpp

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demo_tutorial_index_index_assignment5

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index_assignment5.cpp

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index_assignment5.cpp

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demo_tutorial_index_iterator_solution2

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iterator_solution2.cpp

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iterator_solution2.cpp

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demo_tutorial_sequence_io_example6

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example6.cpp

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example6.cpp

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demo_find_finder_online

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finder_online.cpp

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finder_online.cpp

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demo_arg_align

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arg_align.cpp

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arg_align.cpp

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demo_tutorial_modifiers_modifier_modcomplementdna

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modifier_modcomplementdna.cpp

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modifier_modcomplementdna.cpp

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stellar

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stellar.cpp

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stellar.cpp

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demo_store_store_example

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store_example.cpp

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store_example.cpp

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variant_comp

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variant_comp.cpp

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variant_comp.cpp

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demo_seeds_seeds_add_seed

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seeds_add_seed.cpp

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seeds_add_seed.cpp

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demo_tutorial_sequence_io_solution6

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solution6.cpp

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solution6.cpp

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test_index_drawing

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test_index_drawing.cpp

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test_index_drawing.cpp

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demo_sam2svg

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sam2svg.cpp

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sam2svg.cpp

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demo_tutorial_sequence_io_solution3

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solution3.cpp

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solution3.cpp

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demo_tutorial_alignments_alignment_global_assignment1

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alignment_global_assignment1.cpp

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alignment_global_assignment1.cpp

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test_index_fm_rank_dictionary

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test_index_fm_rank_dictionary.cpp

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test_index_fm_rank_dictionary.cpp

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demo_index_index_begin_range_goDown_representative_repLength

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index_begin_range_goDown_representative_repLength.cpp

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index_begin_range_goDown_representative_repLength.cpp

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test_graph_msa

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test_graph_msa.cpp

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test_graph_msa.cpp

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demo_tutorial_sequence_io_solution1

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solution1.cpp

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solution1.cpp

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test_index_crosscompare_char

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test_index_crosscompare_char.cpp

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test_index_crosscompare_char.cpp

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demo_tutorial_index_index_assignment4

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index_assignment4.cpp

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index_assignment4.cpp

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test_seq_io

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test_seq_io.cpp

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test_seq_io.cpp

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rep_sep

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rep_sep.cpp

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rep_sep.cpp

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demo_benchmark_stream_write

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benchmark_stream_write.cpp

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benchmark_stream_write.cpp

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test_parallel

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test_parallel.cpp

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test_parallel.cpp

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CMakeDetermineCompilerABI_C.bin

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CMakeCCompilerABI.c

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CMakeCCompilerABI.c

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test_basic_container

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test_basic_container.cpp

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test_basic_container.cpp

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demo_tutorial_iterators_iterators_assignment_2_solution

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iterators_assignment_2_solution.cpp

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iterators_assignment_2_solution.cpp

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demo_tutorial_graph_solution_1

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solution_1.cpp

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solution_1.cpp

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test_misc

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test_misc.cpp

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test_misc.cpp

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demo_file_readwrite

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file_readwrite.cpp

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file_readwrite.cpp

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test_index_crosscompare_char_dfi

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test_index_crosscompare_char_dfi.cpp

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test_index_crosscompare_char_dfi.cpp

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demo_tutorial_graph_graph_dijkstra

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graph_dijkstra.cpp

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graph_dijkstra.cpp

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test_find_swift

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test_find_swift.cpp

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test_find_swift.cpp

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demo_tutorial_alignments_alignment_global_standard

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alignment_global_standard.cpp

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alignment_global_standard.cpp

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demo_tutorial_read_mapping_minimapper

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minimapper.cpp

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minimapper.cpp

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demo_tutorial_sequence_io_solution5

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solution5.cpp

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solution5.cpp

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demo_tutorial_alignments_alignment_representation_alignment_graph

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alignment_representation_alignment_graph.cpp

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alignment_representation_alignment_graph.cpp

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demo_graph_algo_scc

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graph_algo_scc.cpp

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graph_algo_scc.cpp

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demo_filter_sam

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filter_sam.cpp

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filter_sam.cpp

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demo_annotation_converter

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annotation_converter.cpp

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annotation_converter.cpp

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test_basic_smart_pointer

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test_basic_smart_pointer.cpp

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test_basic_smart_pointer.cpp

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demo_index_index_iterator_short

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index_iterator_short.cpp

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index_iterator_short.cpp

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demo_tutorial_alignments_alignment_pairwise_global2

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alignment_pairwise_global2.cpp

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alignment_pairwise_global2.cpp

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demo_tutorial_find_find_assignment3_solution

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find_assignment3_solution.cpp

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find_assignment3_solution.cpp

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demo_graph_algo_bfs

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graph_algo_bfs.cpp

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graph_algo_bfs.cpp

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test_basic_metaprogramming

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test_basic_metaprogramming.cpp

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test_basic_metaprogramming.cpp

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demo_graph_algo_his

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graph_algo_his.cpp

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graph_algo_his.cpp

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demo_tutorial_find_find_index_multiple

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find_index_multiple.cpp

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find_index_multiple.cpp

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demo_index_index_iterator

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index_iterator.cpp

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index_iterator.cpp

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demo_tutorial_string_sets_assignment_2_solution

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assignment_2_solution.cpp

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assignment_2_solution.cpp

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demo_tutorial_seed_and_extend_example6

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example6.cpp

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example6.cpp

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pair_align

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pair_align.cpp

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pair_align.cpp

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alf

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alf.cpp

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alf.cpp

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test_random

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test_random.cpp

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test_random.cpp

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demo_index_node_predicate

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index_node_predicate.cpp

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index_node_predicate.cpp

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demo_interval_tree

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interval_tree.cpp

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interval_tree.cpp

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demo_tutorial_modifiers_assignment1_solution

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assignment1_solution.cpp

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assignment1_solution.cpp

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demo_index_sufarray

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index_sufarray.cpp

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index_sufarray.cpp

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sgip

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sgip.cpp

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sgip.cpp

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demo_enumerate_strings

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enumerate_strings.cpp

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enumerate_strings.cpp

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demo_zscore

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zscore.cpp

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zscore.cpp

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demo_example_seq_io

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example_seq_io.cpp

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example_seq_io.cpp

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demo_tutorial_store_store_access_aligned_reads

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store_access_aligned_reads.cpp

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store_access_aligned_reads.cpp

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demo_tutorial_alignments_alignment_gaps

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alignment_gaps.cpp

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alignment_gaps.cpp

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demo_tutorial_alignments_alignment2_align

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alignment2_align.cpp

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alignment2_align.cpp

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search

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search.cpp

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search.cpp

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demo_tutorial_data_journaling_example_online_search_assignment3_hint

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example_online_search_assignment3_hint.cpp

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example_online_search_assignment3_hint.cpp

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demo_tutorial_basics_allocator

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allocator.cpp

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allocator.cpp

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demo_align_gaps_example

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gaps_example.cpp

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gaps_example.cpp

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demo_graph_hmm

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graph_hmm.cpp

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graph_hmm.cpp

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test_basic_math

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test_basic_math.cpp

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demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step3

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pairwise_sequence_alignment_assignment5_step3.cpp

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pairwise_sequence_alignment_assignment5_step3.cpp

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demo_tutorial_rnaseq_genequant_assignment1

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genequant_assignment1.cpp

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genequant_assignment1.cpp

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test_basic_proxy

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test_basic_proxy.cpp

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test_basic_proxy.cpp

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razers3_simulate_reads

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simulate_reads.cpp

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simulate_reads.cpp

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demo_sequence_infix

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infix.cpp

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infix.cpp

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demo_tutorial_sequence_io_example8

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example8.cpp

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demo_tutorial_alignments_alignment_align_assignment1

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alignment_align_assignment1.cpp

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alignment_align_assignment1.cpp

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CMakeDetermineCompilerABI_CXX.bin

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demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step1

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pairwise_sequence_alignment_assignment5_step1.cpp

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demo_tutorial_seed_and_extend_solution3

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solution3.cpp

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test_align

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demo_allocator

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allocator.cpp

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allocator.cpp

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test_graph_algorithms

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demo_graph_algo_tree_kruskal

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graph_algo_tree_kruskal.cpp

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graph_algo_tree_kruskal.cpp

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test_arg_parse

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test_arg_parse.cpp

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test_arg_parse.cpp

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demo_random_random

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random.cpp

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random.cpp

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demo_tutorial_find_find_approx

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find_approx.cpp

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find_approx.cpp

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demo_tutorial_modifiers_modifier_nested

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modifier_nested.cpp

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modifier_nested.cpp

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demo_tutorial_sequences_segments_assignment_hint

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segments_assignment_hint.cpp

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segments_assignment_hint.cpp

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demo_index_find_stringset

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index_find_stringset.cpp

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index_find_stringset.cpp

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demo_tutorial_annotation_store_assignment_3_solution

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assignment_3_solution.cpp

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demo_graph_algo_topsort

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graph_algo_topsort.cpp

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demo_index_index_finder

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index_finder.cpp

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index_finder.cpp

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demo_tutorial_string_sets_assignment_3_workshop_solution

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assignment_3_workshop_solution.cpp

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assignment_3_workshop_solution.cpp

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demo_modifier_modview

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modifier_modview.cpp

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modifier_modview.cpp

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demo_tutorial_alignments_alignment_banded

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alignment_banded.cpp

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alignment_banded.cpp

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demo_tutorial_store_store_diplay_aligned_reads

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store_diplay_aligned_reads.cpp

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store_diplay_aligned_reads.cpp

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demo_tutorial_basic_sequence_io_solution4

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solution4.cpp

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demo_sequence_segment

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segment.cpp

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segment.cpp

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demo_find_exact

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find_exact.cpp

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find_exact.cpp

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test_index_sa_bwtwalk

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test_index_sa_bwtwalk.cpp

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test_basic_parallelism

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micro_razers

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param_tabs.cpp

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param_tabs.cpp

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demo_misc_interval_tree_example

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demo_tutorial_basic_sequence_io_solution3

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demo_tutorial_modifiers_assignment1

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demo_tutorial_basics_show_alphabets

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demo_graph_algo_path_dijkstra

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graph_algo_path_dijkstra.cpp

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demo_tutorial_sequences_segments_assignment_2_solution

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feature_tests.bin

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demo_howto_cmdparser_example

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test_sequence

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demo_tutorial_alignments_alignment_pairwise_local_assignment1

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demo_index_index_textAt_indexText_saAt_indexRequire

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demo_tutorial_rnaseq_genequant_assignment4

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test_index_creation

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demo_index_maxrepeats

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test_file

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demo_graph_graph_algo_dijkstra

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demo_repeats_demo

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join

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test_index_crosscompare_dna

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test_map

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demo_seeds_seeds_extension

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seeds_extension.cpp

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demo_tutorial_find_find_index

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find_index.cpp

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demo_sequence_string

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splazers

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demo_tutorial_index_indices_assignment_1

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demo_tutorial_index_index_qgram

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demo_tutorial_seed_and_extend_solution2

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test_bam_io

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demo_tutorial_sequence_io_example1

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demo_howto_filter_similar_sequences

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seqan_tcoffee

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demo_tutorial_annotation_store_assignment_2_solution

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demo_index_lcp

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masai_output_se

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sorter.cpp

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test_basic_concept

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razers2

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razers.cpp

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demo_tutorial_alignments_alignment_global_assignment2

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demo_index_index_getOccurrences_getFrequency_range_getFibre

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razers

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demo_modifier_modreverse

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demo_index_qgram_counts

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demo_index_find

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demo_seq_io_fai_index_example

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demo_tutorial_find_find_assignment1

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demo_tutorial_alignments_alignment_pairwise_global

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test_index_shapes

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razers3_quality2prob

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test_score

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demo_tutorial_rnaseq_genequant_assignment5

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demo_tutorial_alignments_alignment_msa

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demo_tutorial_seed_and_extend_solution7

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demo_find_wild

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insegt

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demo_index_index_qgram

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demo_tutorial_find_find_assignment3

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demo_tutorial_seed_and_extend_example8

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demo_rooted_iterator

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demo_tutorial_sequence_count_generic_characters

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test_funcs_param_chooser

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demo_basic_metaprogramming_switch

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demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step4

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demo_tutorial_alignments_alignment_local_waterman_eggert

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demo_index_shape_hash

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masai_mapper

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demo_align_global_alignment_banded

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demo_howto_efficiently_import_sequences

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demo_howto_scores_load_score

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demo_tutorial_annotation_store_assignment_1_solution

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demo_file_speed

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demo_tutorial_random_random_examples

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test_graph_align

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demo_tutorial_rnaseq_genequant_solution5

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demo_graph_algo_path_floydwarshall

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demo_seeds_seeds_chaining

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demo_graph_algo_path_transitive

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sak

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test_index_stree_iterators

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demo_tutorial_index_index_assignment6

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demo_graph_algo_tree_prim

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demo_modifier_nested

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demo_index_shape_hash_init

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demo_tutorial_find_find_assignment1_solution

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demo_tutorial_iterators_iterators_assignment_1_solution

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demo_sequence_prefix

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demo_tutorial_gff_io_example2

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test_find

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demo_gff_io_gff_stream_read

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test_index_crosscompare_dna_dfi

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demo_tutorial_alignments_alignment_local_standard

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demo_index_index_length_countSequences

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seqcons

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test_basic_iterator

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