rate4site - i386

Documentation

Binaries

rate4site

compile units

includes

unassigned

rate4siteOptions.cpp

unassigned

rate4site.cpp

unassigned

sequenceContainer.cpp

unassigned

sequence.cpp

unassigned

mulAlphabet.cpp

unassigned

someUtil.cpp

unassigned

logFile.cpp

pijAccelerator.cpp

replacementModel.cpp

distribution.cpp

unassigned

errorMsg.cpp

unassigned

nucleotide.cpp

unassigned

amino.cpp

unassigned

evaluateCharacterFreq.cpp

unassigned

uniDistribution.cpp

unassigned

generalGammaDistribution.cpp

unassigned

readDatMatrix.cpp

unassigned

datMatrixHolder.cpp

unassigned

chebyshevAccelerator.cpp

unassigned

gtrModel.cpp

unassigned

fromQtoPt.cpp

unassigned

distanceTable.cpp

unassigned

nj.cpp

unassigned

njConstrain.cpp

unassigned

numRec.cpp

unassigned

stochasticProcess.cpp

unassigned

likeDist.cpp

unassigned

countTableComponent.cpp

unassigned

fastStartTree.cpp

unassigned

bestAlpha.cpp

unassigned

gammaDistribution.cpp

unassigned

siteSpecificRate.cpp

unassigned

likelihoodComputation.cpp

unassigned

recognizeFormat.cpp

unassigned

bblEM.cpp

unassigned

hky.cpp

unassigned

bestGtrModelParams.cpp

unassigned

tamura92.cpp

unassigned

bestHKYparam.cpp

unassigned

bestTamura92param.cpp

talRandom.cpp

unassigned

fromCountTableComponentToDistance.cpp

unassigned

computeCounts.cpp

unassigned

computeDownAlg.cpp

unassigned

computeUpAlg.cpp

unassigned

gammaUtilities.cpp

unassigned

seqContainerTreeMap.cpp

unassigned

treeUtil.cpp

unassigned

multipleStochasticProcess.cpp

unassigned

tree.cpp

unassigned

bblEMProportionalEB.cpp

unassigned

fromCountTableComponentToDistancePropEB.cpp

unassigned

likeDistPropEB.cpp

unassigned

bblLSProportionalEB.cpp

unassigned

phylipFormat.cpp

unassigned

maseFormat.cpp

unassigned

clustalFormat.cpp

unassigned

fastaFormat.cpp

unassigned

phylipSequentialFormat.cpp

unassigned

molphyFormat.cpp

getRandomWeights.cpp

unassigned

nexusFormat.cpp

alphabet.cpp

unassigned

readTree.cpp

unassigned

computePijComponent.cpp

unassigned

unObservableData.cpp

unassigned

likelihoodComputationGL.cpp

libraries


manual

rate4site_doublerep

compile units

includes

unassigned

rate4siteOptions.cpp

unassigned

rate4site.cpp

unassigned

sequenceContainer.cpp

unassigned

sequence.cpp

unassigned

mulAlphabet.cpp

unassigned

someUtil.cpp

unassigned

logFile.cpp

pijAccelerator.cpp

replacementModel.cpp

distribution.cpp

unassigned

errorMsg.cpp

unassigned

nucleotide.cpp

unassigned

amino.cpp

unassigned

evaluateCharacterFreq.cpp

unassigned

uniDistribution.cpp

unassigned

generalGammaDistribution.cpp

unassigned

readDatMatrix.cpp

unassigned

datMatrixHolder.cpp

unassigned

chebyshevAccelerator.cpp

unassigned

gtrModel.cpp

unassigned

fromQtoPt.cpp

unassigned

distanceTable.cpp

unassigned

nj.cpp

unassigned

njConstrain.cpp

unassigned

numRec.cpp

unassigned

stochasticProcess.cpp

unassigned

likeDist.cpp

unassigned

countTableComponent.cpp

unassigned

fastStartTree.cpp

unassigned

bestAlpha.cpp

unassigned

gammaDistribution.cpp

unassigned

siteSpecificRate.cpp

unassigned

likelihoodComputation.cpp

unassigned

recognizeFormat.cpp

unassigned

bblEM.cpp

unassigned

hky.cpp

unassigned

bestGtrModelParams.cpp

unassigned

tamura92.cpp

unassigned

bestHKYparam.cpp

unassigned

bestTamura92param.cpp

talRandom.cpp

unassigned

fromCountTableComponentToDistance.cpp

unassigned

computeCounts.cpp

unassigned

computeDownAlg.cpp

unassigned

computeUpAlg.cpp

unassigned

gammaUtilities.cpp

unassigned

seqContainerTreeMap.cpp

unassigned

treeUtil.cpp

unassigned

multipleStochasticProcess.cpp

unassigned

tree.cpp

unassigned

bblEMProportionalEB.cpp

unassigned

fromCountTableComponentToDistancePropEB.cpp

unassigned

likeDistPropEB.cpp

unassigned

bblLSProportionalEB.cpp

unassigned

phylipFormat.cpp

unassigned

maseFormat.cpp

unassigned

clustalFormat.cpp

unassigned

fastaFormat.cpp

unassigned

phylipSequentialFormat.cpp

unassigned

molphyFormat.cpp

getRandomWeights.cpp

unassigned

nexusFormat.cpp

alphabet.cpp

unassigned

readTree.cpp

unassigned

computePijComponent.cpp

unassigned

unObservableData.cpp

unassigned

likelihoodComputationGL.cpp

libraries


manual