uc-echo - amd64
Documentation
./doc/changelog.Debian.gz
./doc/copyright
./doc/README.Debian
./doc/changelog.gz
Binaries
NeighborMerge
compile units
unassigned
NeighborMerge.cpp
Class
./NeighborMerge.cpp.002t.class
Gimple
./NeighborMerge.cpp.004t.gimple
GKD
./NeighborMerge.o.gkd
OBJ
obj: ./NeighborMerge.o
unassigned
DNASeq.cpp
Class
./DNASeq.cpp.002t.class
Gimple
./DNASeq.cpp.004t.gimple
GKD
./DNASeq.o.gkd
OBJ
obj: ./DNASeq.o
NeighborSet.cpp
Class
./NeighborSet.cpp.002t.class
Gimple
./NeighborSet.cpp.004t.gimple
GKD
./NeighborSet.o.gkd
OBJ
obj: ./NeighborSet.o
KmerHashMap.cpp
Class
./KmerHashMap.cpp.002t.class
Gimple
./KmerHashMap.cpp.004t.gimple
GKD
./KmerHashMap.o.gkd
OBJ
obj: ./KmerHashMap.o
includes
unassigned
../headers//usr/include/c++/4.9/bits/locale_facets.h
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
./MMAP.hpp
../headers//usr/include/c++/4.9/typeinfo
./NeighborSet.hpp
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
./MMAPReads.hpp
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/c++/4.9/ostream
../headers//usr/include/c++/4.9/bits/basic_ios.h
../headers//usr/include/c++/4.9/streambuf
../headers//usr/include/c++/4.9/sstream
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
./util.hpp
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/c++/4.9/bits/stl_tree.h
../headers//usr/include/c++/4.9/bits/stl_map.h
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/bits/stl_pair.h
NeighborMerge.cpp
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/wchar.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/bits/ostream.tcc
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/postypes.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/functional_hash.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/bits/basic_ios.tcc
../headers//usr/include/c++/4.9/bits/move.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/bits/ostream_insert.h
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/concurrence.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/string.h
./DNASeq.hpp
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl-linux.h
../headers//usr/include/x86_64-linux-gnu/bits/confname.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/x86_64-linux-gnu/sys/mman.h
../headers//usr/include/unistd.h
../headers//usr/include/assert.h
unassigned
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/tr1/functional_hash.h
DNASeq.cpp
../headers//usr/include/c++/4.9/bits/stl_pair.h
./DNASeq.hpp
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/move.h
../headers//usr/include/string.h
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/stdio.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/locale.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/c++/4.9/ext/concurrence.h
NeighborSet.cpp
./NeighborSet.hpp
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_tree.h
../headers//usr/include/c++/4.9/bits/stl_pair.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
../headers//usr/include/c++/4.9/tr1/functional_hash.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_map.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/concurrence.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
./DNASeq.hpp
../headers//usr/include/assert.h
KmerHashMap.cpp
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/c++/4.9/tr1/tuple
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/functional_hash.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_tree.h
../headers//usr/include/c++/4.9/bits/stl_pair.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/bits/stl_map.h
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/ext/concurrence.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/string.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
./DNASeq.hpp
./KmerHashMap.hpp
libraries
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
Voting
compile units
unassigned
Voting.cpp
Class
./Voting.cpp.002t.class
Gimple
./Voting.cpp.004t.gimple
GKD
./Voting.o.gkd
OBJ
obj: ./Voting.o
unassigned
DNASeq.cpp
Class
./DNASeq.cpp.002t.class
Gimple
./DNASeq.cpp.004t.gimple
GKD
./DNASeq.o.gkd
OBJ
obj: ./DNASeq.o
NeighborSet.cpp
Class
./NeighborSet.cpp.002t.class
Gimple
./NeighborSet.cpp.004t.gimple
GKD
./NeighborSet.o.gkd
OBJ
obj: ./NeighborSet.o
KmerHashMap.cpp
Class
./KmerHashMap.cpp.002t.class
Gimple
./KmerHashMap.cpp.004t.gimple
GKD
./KmerHashMap.o.gkd
OBJ
obj: ./KmerHashMap.o
includes
unassigned
../headers//usr/include/c++/4.9/bits/locale_facets.h
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
./MMAP.hpp
../headers//usr/include/c++/4.9/typeinfo
./NeighborSet.hpp
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
./MMAPReads.hpp
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/c++/4.9/ostream
../headers//usr/include/c++/4.9/bits/basic_ios.h
Voting.cpp
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
./util.hpp
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/c++/4.9/bits/stl_tree.h
../headers//usr/include/c++/4.9/bits/stl_map.h
../headers//usr/include/c++/4.9/tr1/tuple
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/bits/stl_pair.h
../headers//usr/include/c++/4.9/istream
../headers//usr/include/c++/4.9/fstream
../headers//usr/include/c++/4.9/cmath
../headers//usr/include/c++/4.9/streambuf
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/sstream
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./DNASeq.hpp
../headers//usr/include/c++/4.9/bits/stl_algo.h
../headers//usr/include/c++/4.9/bits/stl_set.h
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/wchar.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/bits/ostream.tcc
../headers//usr/include/c++/4.9/bits/istream.tcc
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/functional_hash.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/postypes.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/limits
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/bits/basic_ios.tcc
../headers//usr/include/c++/4.9/bits/move.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h
../headers//usr/include/c++/4.9/bits/fstream.tcc
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/bits/ostream_insert.h
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/concurrence.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl-linux.h
../headers//usr/include/x86_64-linux-gnu/bits/confname.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/x86_64-linux-gnu/sys/mman.h
../headers//usr/include/unistd.h
../headers//usr/include/assert.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
unassigned
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/tr1/functional_hash.h
DNASeq.cpp
../headers//usr/include/c++/4.9/bits/stl_pair.h
./DNASeq.hpp
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/move.h
../headers//usr/include/string.h
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/stdio.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/locale.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/c++/4.9/ext/concurrence.h
NeighborSet.cpp
./NeighborSet.hpp
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_tree.h
../headers//usr/include/c++/4.9/bits/stl_pair.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
../headers//usr/include/c++/4.9/tr1/functional_hash.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_map.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/concurrence.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
./DNASeq.hpp
../headers//usr/include/assert.h
KmerHashMap.cpp
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/c++/4.9/tr1/tuple
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/functional_hash.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_tree.h
../headers//usr/include/c++/4.9/bits/stl_pair.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/bits/stl_map.h
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/ext/concurrence.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/string.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
./DNASeq.hpp
./KmerHashMap.hpp
libraries
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
NeighborJoinParam
compile units
unassigned
NeighborJoinParam.cpp
Class
./NeighborJoinParam.cpp.002t.class
Gimple
./NeighborJoinParam.cpp.004t.gimple
GKD
./NeighborJoinParam.o.gkd
OBJ
obj: ./NeighborJoinParam.o
unassigned
DNASeq.cpp
Class
./DNASeq.cpp.002t.class
Gimple
./DNASeq.cpp.004t.gimple
GKD
./DNASeq.o.gkd
OBJ
obj: ./DNASeq.o
NeighborSet.cpp
Class
./NeighborSet.cpp.002t.class
Gimple
./NeighborSet.cpp.004t.gimple
GKD
./NeighborSet.o.gkd
OBJ
obj: ./NeighborSet.o
KmerHashMap.cpp
Class
./KmerHashMap.cpp.002t.class
Gimple
./KmerHashMap.cpp.004t.gimple
GKD
./KmerHashMap.o.gkd
OBJ
obj: ./KmerHashMap.o
includes
unassigned
../headers//usr/include/c++/4.9/bits/locale_facets.h
./MMAP.hpp
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
./NeighborSet.hpp
./MMAPReads.hpp
../headers//usr/include/c++/4.9/ostream
../headers//usr/include/c++/4.9/bits/basic_ios.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
./KmerHashMap.hpp
../headers//usr/include/c++/4.9/streambuf
../headers//usr/include/c++/4.9/sstream
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/bits/stl_tree.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
./util.hpp
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/c++/4.9/bits/stl_map.h
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/tr1/functional_hash.h
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/bits/stl_algo.h
NeighborJoinParam.cpp
../headers//usr/include/c++/4.9/bits/stl_pair.h
./DNASeq.hpp
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/wchar.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/bits/ostream.tcc
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/tr1/tuple
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/postypes.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/basic_ios.tcc
../headers//usr/include/c++/4.9/bits/move.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/bits/ostream_insert.h
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/concurrence.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl-linux.h
../headers//usr/include/x86_64-linux-gnu/bits/confname.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/x86_64-linux-gnu/sys/mman.h
../headers//usr/include/unistd.h
../headers//usr/include/assert.h
unassigned
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/tr1/functional_hash.h
DNASeq.cpp
../headers//usr/include/c++/4.9/bits/stl_pair.h
./DNASeq.hpp
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/move.h
../headers//usr/include/string.h
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/stdio.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/locale.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/c++/4.9/ext/concurrence.h
NeighborSet.cpp
./NeighborSet.hpp
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_tree.h
../headers//usr/include/c++/4.9/bits/stl_pair.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
../headers//usr/include/c++/4.9/tr1/functional_hash.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_map.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/concurrence.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
./DNASeq.hpp
../headers//usr/include/assert.h
KmerHashMap.cpp
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/c++/4.9/tr1/tuple
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/functional_hash.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_tree.h
../headers//usr/include/c++/4.9/bits/stl_pair.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/bits/stl_map.h
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/ext/concurrence.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/string.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
./DNASeq.hpp
./KmerHashMap.hpp
libraries
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
hashing
compile units
unassigned
hashing.cpp
Class
./hashing.cpp.002t.class
Gimple
./hashing.cpp.004t.gimple
GKD
./hashing.o.gkd
OBJ
obj: ./hashing.o
unassigned
DNASeq.cpp
Class
./DNASeq.cpp.002t.class
Gimple
./DNASeq.cpp.004t.gimple
GKD
./DNASeq.o.gkd
OBJ
obj: ./DNASeq.o
NeighborSet.cpp
Class
./NeighborSet.cpp.002t.class
Gimple
./NeighborSet.cpp.004t.gimple
GKD
./NeighborSet.o.gkd
OBJ
obj: ./NeighborSet.o
KmerHashMap.cpp
Class
./KmerHashMap.cpp.002t.class
Gimple
./KmerHashMap.cpp.004t.gimple
GKD
./KmerHashMap.o.gkd
OBJ
obj: ./KmerHashMap.o
includes
unassigned
../headers//usr/include/c++/4.9/bits/locale_facets.h
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
./MMAP.hpp
../headers//usr/include/c++/4.9/typeinfo
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
./MMAPReads.hpp
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/c++/4.9/ostream
../headers//usr/include/c++/4.9/bits/basic_ios.h
../headers//usr/include/c++/4.9/sstream
../headers//usr/include/c++/4.9/streambuf
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
./util.hpp
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/c++/4.9/bits/stl_tree.h
./KmerHashMap.hpp
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
./DNASeq.hpp
../headers//usr/include/c++/4.9/bits/stl_pair.h
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/tr1/tuple
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/bits/stl_map.h
hashing.cpp
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/wchar.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/bits/ostream.tcc
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/functional_hash.h
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/postypes.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/basic_ios.tcc
../headers//usr/include/c++/4.9/bits/move.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/bits/ostream_insert.h
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/concurrence.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl-linux.h
../headers//usr/include/x86_64-linux-gnu/bits/confname.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/x86_64-linux-gnu/sys/mman.h
../headers//usr/include/unistd.h
../headers//usr/include/assert.h
unassigned
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/tr1/functional_hash.h
DNASeq.cpp
../headers//usr/include/c++/4.9/bits/stl_pair.h
./DNASeq.hpp
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/move.h
../headers//usr/include/string.h
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/stdio.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/locale.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/c++/4.9/ext/concurrence.h
NeighborSet.cpp
./NeighborSet.hpp
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_tree.h
../headers//usr/include/c++/4.9/bits/stl_pair.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
../headers//usr/include/c++/4.9/tr1/functional_hash.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_map.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/concurrence.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
./DNASeq.hpp
../headers//usr/include/assert.h
KmerHashMap.cpp
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/c++/4.9/tr1/tuple
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/functional_hash.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_tree.h
../headers//usr/include/c++/4.9/bits/stl_pair.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/bits/stl_map.h
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/ext/concurrence.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/string.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
./DNASeq.hpp
./KmerHashMap.hpp
libraries
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
HashMerge
compile units
unassigned
HashMerge.cpp
Class
./HashMerge.cpp.002t.class
Gimple
./HashMerge.cpp.004t.gimple
GKD
./HashMerge.o.gkd
OBJ
obj: ./HashMerge.o
unassigned
DNASeq.cpp
Class
./DNASeq.cpp.002t.class
Gimple
./DNASeq.cpp.004t.gimple
GKD
./DNASeq.o.gkd
OBJ
obj: ./DNASeq.o
NeighborSet.cpp
Class
./NeighborSet.cpp.002t.class
Gimple
./NeighborSet.cpp.004t.gimple
GKD
./NeighborSet.o.gkd
OBJ
obj: ./NeighborSet.o
KmerHashMap.cpp
Class
./KmerHashMap.cpp.002t.class
Gimple
./KmerHashMap.cpp.004t.gimple
GKD
./KmerHashMap.o.gkd
OBJ
obj: ./KmerHashMap.o
includes
unassigned
../headers//usr/include/c++/4.9/bits/locale_facets.h
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
./MMAP.hpp
../headers//usr/include/c++/4.9/typeinfo
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/ostream
../headers//usr/include/c++/4.9/bits/basic_ios.h
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/stl_iterator.h
./util.hpp
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
HashMerge.cpp
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
./DNASeq.hpp
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/wchar.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/bits/ostream.tcc
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/postypes.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/functional_hash.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/tr1/tuple
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/bits/stl_pair.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/bits/move.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/bits/ostream_insert.h
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/concurrence.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl-linux.h
../headers//usr/include/x86_64-linux-gnu/bits/confname.h
./MMAPReads.hpp
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/x86_64-linux-gnu/sys/mman.h
../headers//usr/include/unistd.h
../headers//usr/include/assert.h
unassigned
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/tr1/functional_hash.h
DNASeq.cpp
../headers//usr/include/c++/4.9/bits/stl_pair.h
./DNASeq.hpp
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/move.h
../headers//usr/include/string.h
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/stdio.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/locale.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/c++/4.9/ext/concurrence.h
NeighborSet.cpp
./NeighborSet.hpp
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_tree.h
../headers//usr/include/c++/4.9/bits/stl_pair.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
../headers//usr/include/c++/4.9/tr1/functional_hash.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_map.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/concurrence.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
./DNASeq.hpp
../headers//usr/include/assert.h
KmerHashMap.cpp
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/c++/4.9/tr1/tuple
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/functional_hash.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_tree.h
../headers//usr/include/c++/4.9/bits/stl_pair.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/bits/stl_map.h
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/ext/concurrence.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/string.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
./DNASeq.hpp
./KmerHashMap.hpp
libraries
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
NeighborJoin
compile units
unassigned
NeighborJoin.cpp
Class
./NeighborJoin.cpp.002t.class
Gimple
./NeighborJoin.cpp.004t.gimple
GKD
./NeighborJoin.o.gkd
OBJ
obj: ./NeighborJoin.o
unassigned
DNASeq.cpp
Class
./DNASeq.cpp.002t.class
Gimple
./DNASeq.cpp.004t.gimple
GKD
./DNASeq.o.gkd
OBJ
obj: ./DNASeq.o
NeighborSet.cpp
Class
./NeighborSet.cpp.002t.class
Gimple
./NeighborSet.cpp.004t.gimple
GKD
./NeighborSet.o.gkd
OBJ
obj: ./NeighborSet.o
KmerHashMap.cpp
Class
./KmerHashMap.cpp.002t.class
Gimple
./KmerHashMap.cpp.004t.gimple
GKD
./KmerHashMap.o.gkd
OBJ
obj: ./KmerHashMap.o
includes
unassigned
../headers//usr/include/c++/4.9/bits/locale_facets.h
./MMAP.hpp
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
./NeighborSet.hpp
./MMAPReads.hpp
../headers//usr/include/c++/4.9/ostream
../headers//usr/include/c++/4.9/bits/basic_ios.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
./KmerHashMap.hpp
../headers//usr/include/c++/4.9/streambuf
../headers//usr/include/c++/4.9/sstream
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/bits/stl_tree.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
./util.hpp
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/c++/4.9/bits/stl_map.h
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/tr1/functional_hash.h
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/bits/stl_algo.h
NeighborJoin.cpp
../headers//usr/include/c++/4.9/bits/stl_pair.h
./DNASeq.hpp
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/wchar.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/bits/ostream.tcc
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/tr1/tuple
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/postypes.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/basic_ios.tcc
../headers//usr/include/c++/4.9/bits/move.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/bits/ostream_insert.h
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/concurrence.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl-linux.h
../headers//usr/include/x86_64-linux-gnu/bits/confname.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/x86_64-linux-gnu/sys/mman.h
../headers//usr/include/unistd.h
../headers//usr/include/assert.h
unassigned
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/tr1/functional_hash.h
DNASeq.cpp
../headers//usr/include/c++/4.9/bits/stl_pair.h
./DNASeq.hpp
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/move.h
../headers//usr/include/string.h
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/stdio.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/locale.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/c++/4.9/ext/concurrence.h
NeighborSet.cpp
./NeighborSet.hpp
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_tree.h
../headers//usr/include/c++/4.9/bits/stl_pair.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
../headers//usr/include/c++/4.9/tr1/functional_hash.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_map.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/concurrence.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
./DNASeq.hpp
../headers//usr/include/assert.h
KmerHashMap.cpp
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/c++/4.9/tr1/tuple
../headers//usr/include/c++/4.9/tr1/type_traits
../headers//usr/include/c++/4.9/tr1/functional_hash.h
../headers//usr/include/c++/4.9/tr1/hashtable_policy.h
../headers//usr/include/c++/4.9/tr1/shared_ptr.h
../headers//usr/include/c++/4.9/tr1/unordered_map.h
../headers//usr/include/c++/4.9/tr1/hashtable.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_tree.h
../headers//usr/include/c++/4.9/bits/stl_pair.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/bits/stl_map.h
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/ext/concurrence.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/string.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
./DNASeq.hpp
./KmerHashMap.hpp
libraries
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual