tigr-glimmer - amd64
Documentation
./doc/changelog.Debian.gz
./doc/copyright
./doc/README.Debian
./doc/notes.pdf.gz
./doc/glimmer2_docs/build-icm.readme
./doc/glimmer2_docs/long-orfs.readme.gz
./doc/glimmer2_docs/extract.readme
./doc/glimmer2_docs/README.gz
./doc/glimmer2_docs/glimmer2.readme.gz
Binaries
glimmer3
compile units
unassigned
glimmer3.cc
Gimple
./glimmer3.cc.004t.gimple
GKD
./glimmer3.o.gkd
OBJ
obj: ./glimmer3.o
delcher.cc
Gimple
./delcher.cc.004t.gimple
GKD
./delcher.o.gkd
OBJ
obj: ./delcher.o
fasta.cc
Gimple
./fasta.cc.004t.gimple
GKD
./fasta.o.gkd
OBJ
obj: ./fasta.o
unassigned
gene.cc
Gimple
./gene.cc.004t.gimple
GKD
./gene.o.gkd
OBJ
obj: ./gene.o
unassigned
icm.cc
Gimple
./icm.cc.004t.gimple
GKD
./icm.o.gkd
OBJ
obj: ./icm.o
includes
unassigned
../headers//usr/include/c++/4.9/bits/locale_facets.h
../headers//work/tigr-glimmer-3.02/src/Common/exceptions.hh
./glimmer3.hh
glimmer3.cc
../headers//work/tigr-glimmer-3.02/src/Common/gene.hh
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/stl_bvector.h
../headers//work/tigr-glimmer-3.02/src/Common/delcher.hh
../headers//usr/include/c++/4.9/ostream
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/bits/basic_ios.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/c++/4.9/bits/stl_algo.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/bits/move.h
../headers//usr/include/c++/4.9/bits/stl_heap.h
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/new
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/bits/ostream.tcc
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/postypes.h
../headers//usr/include/c++/4.9/exception
../headers//usr/include/c++/4.9/bits/basic_ios.tcc
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/bits/ostream_insert.h
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/getopt.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//work/tigr-glimmer-3.02/src/ICM/icm.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//work/tigr-glimmer-3.02/src/Common/fasta.hh
../headers//work/tigr-glimmer-3.02/src/Common/xlate_tables.hh
../headers//usr/include/assert.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/ctype.h
delcher.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/iostream
./exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/c++/4.9/new
fasta.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/string.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/iostream
./exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
./fasta.hh
../headers//usr/include/c++/4.9/new
unassigned
./exceptions.hh
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
gene.cc
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
./gene.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/iostream
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/exception
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
./xlate_tables.hh
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/assert.h
unassigned
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
icm.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/ctype.h
../headers//usr/include/string.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/iostream
../headers//work/tigr-glimmer-3.02/src/Common/exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//work/tigr-glimmer-3.02/src/Common/delcher.hh
./icm.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//work/tigr-glimmer-3.02/src/Common/xlate_tables.hh
../headers//work/tigr-glimmer-3.02/src/Common/gene.hh
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/assert.h
libraries
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
anomaly
compile units
unassigned
anomaly.cc
Gimple
./anomaly.cc.004t.gimple
GKD
./anomaly.o.gkd
OBJ
obj: ./anomaly.o
delcher.cc
Gimple
./delcher.cc.004t.gimple
GKD
./delcher.o.gkd
OBJ
obj: ./delcher.o
fasta.cc
Gimple
./fasta.cc.004t.gimple
GKD
./fasta.o.gkd
OBJ
obj: ./fasta.o
unassigned
gene.cc
Gimple
./gene.cc.004t.gimple
GKD
./gene.o.gkd
OBJ
obj: ./gene.o
includes
unassigned
../headers//usr/include/c++/4.9/bits/locale_facets.h
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
anomaly.cc
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//work/tigr-glimmer-3.02/src/Common/exceptions.hh
../headers//usr/include/c++/4.9/ostream
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/bits/basic_ios.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/iostream
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/bits/ostream.tcc
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/postypes.h
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/bits/basic_ios.tcc
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/bits/ostream_insert.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//work/tigr-glimmer-3.02/src/Common/delcher.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/getopt.h
../headers//work/tigr-glimmer-3.02/src/Common/fasta.hh
../headers//work/tigr-glimmer-3.02/src/Common/xlate_tables.hh
../headers//work/tigr-glimmer-3.02/src/Common/gene.hh
../headers//usr/include/assert.h
delcher.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/iostream
./exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/c++/4.9/new
fasta.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/string.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/iostream
./exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
./fasta.hh
../headers//usr/include/c++/4.9/new
unassigned
./exceptions.hh
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
gene.cc
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
./gene.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/iostream
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/exception
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
./xlate_tables.hh
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/assert.h
libraries
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
build-fixed
compile units
unassigned
build-fixed.cc
Gimple
./build-fixed.cc.004t.gimple
GKD
./build-fixed.o.gkd
OBJ
obj: ./build-fixed.o
delcher.cc
Gimple
./delcher.cc.004t.gimple
GKD
./delcher.o.gkd
OBJ
obj: ./delcher.o
unassigned
gene.cc
Gimple
./gene.cc.004t.gimple
GKD
./gene.o.gkd
OBJ
obj: ./gene.o
unassigned
icm.cc
Gimple
./icm.cc.004t.gimple
GKD
./icm.o.gkd
OBJ
obj: ./icm.o
includes
unassigned
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
build-fixed.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/iostream
../headers//work/tigr-glimmer-3.02/src/Common/exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//work/tigr-glimmer-3.02/src/Common/delcher.hh
./icm.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/getopt.h
../headers//work/tigr-glimmer-3.02/src/Common/xlate_tables.hh
../headers//work/tigr-glimmer-3.02/src/Common/gene.hh
delcher.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/iostream
./exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/c++/4.9/new
unassigned
./exceptions.hh
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
gene.cc
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
./gene.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/iostream
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/exception
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
./xlate_tables.hh
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/assert.h
unassigned
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
icm.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/ctype.h
../headers//usr/include/string.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/iostream
../headers//work/tigr-glimmer-3.02/src/Common/exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//work/tigr-glimmer-3.02/src/Common/delcher.hh
./icm.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//work/tigr-glimmer-3.02/src/Common/xlate_tables.hh
../headers//work/tigr-glimmer-3.02/src/Common/gene.hh
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/assert.h
libraries
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
start-codon-distrib
compile units
start-codon-distrib.cc
Gimple
./start-codon-distrib.cc.004t.gimple
GKD
./start-codon-distrib.o.gkd
OBJ
obj: ./start-codon-distrib.o
delcher.cc
Gimple
./delcher.cc.004t.gimple
GKD
./delcher.o.gkd
OBJ
obj: ./delcher.o
fasta.cc
Gimple
./fasta.cc.004t.gimple
GKD
./fasta.o.gkd
OBJ
obj: ./fasta.o
unassigned
gene.cc
Gimple
./gene.cc.004t.gimple
GKD
./gene.o.gkd
OBJ
obj: ./gene.o
includes
start-codon-distrib.cc
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/c++/4.9/bits/stl_algo.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/bits/stl_heap.h
../headers//usr/include/c++/4.9/bits/move.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/iostream
../headers//work/tigr-glimmer-3.02/src/Common/exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/getopt.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//work/tigr-glimmer-3.02/src/Common/delcher.hh
./start-codon-distrib.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//work/tigr-glimmer-3.02/src/Common/fasta.hh
../headers//work/tigr-glimmer-3.02/src/Common/xlate_tables.hh
../headers//work/tigr-glimmer-3.02/src/Common/gene.hh
delcher.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/iostream
./exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/c++/4.9/new
fasta.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/string.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/iostream
./exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
./fasta.hh
../headers//usr/include/c++/4.9/new
unassigned
./exceptions.hh
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
gene.cc
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
./gene.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/iostream
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/exception
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
./xlate_tables.hh
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/assert.h
libraries
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
build-icm
compile units
unassigned
build-icm.cc
Gimple
./build-icm.cc.004t.gimple
GKD
./build-icm.o.gkd
OBJ
obj: ./build-icm.o
delcher.cc
Gimple
./delcher.cc.004t.gimple
GKD
./delcher.o.gkd
OBJ
obj: ./delcher.o
unassigned
gene.cc
Gimple
./gene.cc.004t.gimple
GKD
./gene.o.gkd
OBJ
obj: ./gene.o
unassigned
icm.cc
Gimple
./icm.cc.004t.gimple
GKD
./icm.o.gkd
OBJ
obj: ./icm.o
includes
unassigned
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
build-icm.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/iostream
../headers//work/tigr-glimmer-3.02/src/Common/exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/getopt.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//work/tigr-glimmer-3.02/src/Common/delcher.hh
./icm.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//work/tigr-glimmer-3.02/src/Common/xlate_tables.hh
../headers//work/tigr-glimmer-3.02/src/Common/gene.hh
./build-icm.hh
delcher.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/iostream
./exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/c++/4.9/new
unassigned
./exceptions.hh
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
gene.cc
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
./gene.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/iostream
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/exception
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
./xlate_tables.hh
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/assert.h
unassigned
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
icm.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/ctype.h
../headers//usr/include/string.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/iostream
../headers//work/tigr-glimmer-3.02/src/Common/exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//work/tigr-glimmer-3.02/src/Common/delcher.hh
./icm.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//work/tigr-glimmer-3.02/src/Common/xlate_tables.hh
../headers//work/tigr-glimmer-3.02/src/Common/gene.hh
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/assert.h
libraries
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
long-orfs
compile units
unassigned
long-orfs.cc
Gimple
./long-orfs.cc.004t.gimple
GKD
./long-orfs.o.gkd
OBJ
obj: ./long-orfs.o
delcher.cc
Gimple
./delcher.cc.004t.gimple
GKD
./delcher.o.gkd
OBJ
obj: ./delcher.o
fasta.cc
Gimple
./fasta.cc.004t.gimple
GKD
./fasta.o.gkd
OBJ
obj: ./fasta.o
unassigned
gene.cc
Gimple
./gene.cc.004t.gimple
GKD
./gene.o.gkd
OBJ
obj: ./gene.o
includes
unassigned
../headers//usr/include/c++/4.9/bits/locale_facets.h
../headers//work/tigr-glimmer-3.02/src/Common/exceptions.hh
./long-orfs.hh
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
long-orfs.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/stl_heap.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/ostream
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/bits/basic_ios.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//work/tigr-glimmer-3.02/src/Common/gene.hh
../headers//usr/include/c++/4.9/bits/stl_queue.h
../headers//usr/include/c++/4.9/bits/stl_algo.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/bits/move.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/iostream
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/getopt.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/bits/ostream.tcc
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/postypes.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/exception
../headers//usr/include/c++/4.9/bits/basic_ios.tcc
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/bits/ostream_insert.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//work/tigr-glimmer-3.02/src/Common/delcher.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//work/tigr-glimmer-3.02/src/Common/fasta.hh
../headers//work/tigr-glimmer-3.02/src/Common/xlate_tables.hh
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/assert.h
delcher.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/iostream
./exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/c++/4.9/new
fasta.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/string.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/iostream
./exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
./fasta.hh
../headers//usr/include/c++/4.9/new
unassigned
./exceptions.hh
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
gene.cc
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
./gene.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/iostream
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/exception
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
./xlate_tables.hh
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/assert.h
libraries
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
test
compile units
unassigned
test.cc
Gimple
./test.cc.004t.gimple
GKD
./test.o.gkd
OBJ
obj: ./test.o
delcher.cc
Gimple
./delcher.cc.004t.gimple
GKD
./delcher.o.gkd
OBJ
obj: ./delcher.o
includes
unassigned
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
test.cc
../headers//usr/include/c++/4.9/ostream
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/c++/4.9/iostream
../headers//work/tigr-glimmer-3.02/src/Common/exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/bits/locale_facets.h
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/postypes.h
../headers//usr/include/c++/4.9/bits/basic_ios.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//work/tigr-glimmer-3.02/src/Common/delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
delcher.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/iostream
./exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/c++/4.9/new
libraries
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/test.py ../man/test.conf
entropy-score
compile units
unassigned
entropy-score.cc
Gimple
./entropy-score.cc.004t.gimple
GKD
./entropy-score.o.gkd
OBJ
obj: ./entropy-score.o
delcher.cc
Gimple
./delcher.cc.004t.gimple
GKD
./delcher.o.gkd
OBJ
obj: ./delcher.o
fasta.cc
Gimple
./fasta.cc.004t.gimple
GKD
./fasta.o.gkd
OBJ
obj: ./fasta.o
unassigned
gene.cc
Gimple
./gene.cc.004t.gimple
GKD
./gene.o.gkd
OBJ
obj: ./gene.o
includes
unassigned
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
entropy-score.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/c++/4.9/iostream
../headers//work/tigr-glimmer-3.02/src/Common/exceptions.hh
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/getopt.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//work/tigr-glimmer-3.02/src/Common/delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//work/tigr-glimmer-3.02/src/Common/fasta.hh
../headers//work/tigr-glimmer-3.02/src/Common/xlate_tables.hh
../headers//work/tigr-glimmer-3.02/src/Common/gene.hh
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
delcher.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/iostream
./exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/c++/4.9/new
fasta.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/string.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/iostream
./exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
./fasta.hh
../headers//usr/include/c++/4.9/new
unassigned
./exceptions.hh
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
gene.cc
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
./gene.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/iostream
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/exception
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
./xlate_tables.hh
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/assert.h
libraries
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
extract
compile units
extract.cc
Gimple
./extract.cc.004t.gimple
GKD
./extract.o.gkd
OBJ
obj: ./extract.o
delcher.cc
Gimple
./delcher.cc.004t.gimple
GKD
./delcher.o.gkd
OBJ
obj: ./delcher.o
fasta.cc
Gimple
./fasta.cc.004t.gimple
GKD
./fasta.o.gkd
OBJ
obj: ./fasta.o
unassigned
gene.cc
Gimple
./gene.cc.004t.gimple
GKD
./gene.o.gkd
OBJ
obj: ./gene.o
includes
extract.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/iostream
../headers//work/tigr-glimmer-3.02/src/Common/exceptions.hh
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/getopt.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//work/tigr-glimmer-3.02/src/Common/delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//work/tigr-glimmer-3.02/src/Common/fasta.hh
../headers//work/tigr-glimmer-3.02/src/Common/xlate_tables.hh
../headers//work/tigr-glimmer-3.02/src/Common/gene.hh
delcher.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/iostream
./exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/c++/4.9/new
fasta.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/string.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/iostream
./exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
./fasta.hh
../headers//usr/include/c++/4.9/new
unassigned
./exceptions.hh
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
gene.cc
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
./gene.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/iostream
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/exception
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
./xlate_tables.hh
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/assert.h
libraries
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
entropy-profile
compile units
unassigned
entropy-profile.cc
Gimple
./entropy-profile.cc.004t.gimple
GKD
./entropy-profile.o.gkd
OBJ
obj: ./entropy-profile.o
delcher.cc
Gimple
./delcher.cc.004t.gimple
GKD
./delcher.o.gkd
OBJ
obj: ./delcher.o
fasta.cc
Gimple
./fasta.cc.004t.gimple
GKD
./fasta.o.gkd
OBJ
obj: ./fasta.o
unassigned
gene.cc
Gimple
./gene.cc.004t.gimple
GKD
./gene.o.gkd
OBJ
obj: ./gene.o
includes
unassigned
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
entropy-profile.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/iostream
../headers//work/tigr-glimmer-3.02/src/Common/exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/getopt.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//work/tigr-glimmer-3.02/src/Common/delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//work/tigr-glimmer-3.02/src/Common/fasta.hh
../headers//work/tigr-glimmer-3.02/src/Common/xlate_tables.hh
../headers//work/tigr-glimmer-3.02/src/Common/gene.hh
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
delcher.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/iostream
./exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/c++/4.9/new
fasta.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/string.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/iostream
./exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
./fasta.hh
../headers//usr/include/c++/4.9/new
unassigned
./exceptions.hh
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
gene.cc
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
./gene.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/iostream
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/exception
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
./xlate_tables.hh
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/assert.h
libraries
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
uncovered
compile units
unassigned
uncovered.cc
Gimple
./uncovered.cc.004t.gimple
GKD
./uncovered.o.gkd
OBJ
obj: ./uncovered.o
delcher.cc
Gimple
./delcher.cc.004t.gimple
GKD
./delcher.o.gkd
OBJ
obj: ./delcher.o
fasta.cc
Gimple
./fasta.cc.004t.gimple
GKD
./fasta.o.gkd
OBJ
obj: ./fasta.o
includes
unassigned
./uncovered.hh
uncovered.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/bits/stl_algo.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/bits/stl_heap.h
../headers//usr/include/c++/4.9/bits/move.h
../headers//usr/include/c++/4.9/iostream
../headers//work/tigr-glimmer-3.02/src/Common/exceptions.hh
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/getopt.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//work/tigr-glimmer-3.02/src/Common/delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//work/tigr-glimmer-3.02/src/Common/fasta.hh
../headers//work/tigr-glimmer-3.02/src/Common/xlate_tables.hh
../headers//work/tigr-glimmer-3.02/src/Common/gene.hh
delcher.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/iostream
./exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/c++/4.9/new
fasta.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/string.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/iostream
./exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
./fasta.hh
../headers//usr/include/c++/4.9/new
libraries
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
window-acgt
compile units
unassigned
window-acgt.cc
Gimple
./window-acgt.cc.004t.gimple
GKD
./window-acgt.o.gkd
OBJ
obj: ./window-acgt.o
delcher.cc
Gimple
./delcher.cc.004t.gimple
GKD
./delcher.o.gkd
OBJ
obj: ./delcher.o
includes
unassigned
../headers//work/tigr-glimmer-3.02/src/Common/exceptions.hh
window-acgt.cc
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/iostream
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/getopt.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/exception
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//work/tigr-glimmer-3.02/src/Common/delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//work/tigr-glimmer-3.02/src/Common/xlate_tables.hh
../headers//work/tigr-glimmer-3.02/src/Common/gene.hh
delcher.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/iostream
./exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/c++/4.9/new
libraries
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
multi-extract
compile units
unassigned
multi-extract.cc
Gimple
./multi-extract.cc.004t.gimple
GKD
./multi-extract.o.gkd
OBJ
obj: ./multi-extract.o
delcher.cc
Gimple
./delcher.cc.004t.gimple
GKD
./delcher.o.gkd
OBJ
obj: ./delcher.o
fasta.cc
Gimple
./fasta.cc.004t.gimple
GKD
./fasta.o.gkd
OBJ
obj: ./fasta.o
unassigned
gene.cc
Gimple
./gene.cc.004t.gimple
GKD
./gene.o.gkd
OBJ
obj: ./gene.o
includes
unassigned
./multi-extract.hh
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/bits/stl_algo.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/bits/move.h
../headers//usr/include/c++/4.9/bits/stl_heap.h
multi-extract.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/c++/4.9/iostream
../headers//work/tigr-glimmer-3.02/src/Common/exceptions.hh
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/getopt.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//work/tigr-glimmer-3.02/src/Common/delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//work/tigr-glimmer-3.02/src/Common/fasta.hh
../headers//work/tigr-glimmer-3.02/src/Common/xlate_tables.hh
../headers//work/tigr-glimmer-3.02/src/Common/gene.hh
delcher.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/iostream
./exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/c++/4.9/new
fasta.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/string.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/iostream
./exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
./fasta.hh
../headers//usr/include/c++/4.9/new
unassigned
./exceptions.hh
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
gene.cc
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
./gene.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/iostream
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/exception
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
./xlate_tables.hh
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/assert.h
libraries
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
score-fixed
compile units
score-fixed.cc
Gimple
./score-fixed.cc.004t.gimple
GKD
./score-fixed.o.gkd
OBJ
obj: ./score-fixed.o
delcher.cc
Gimple
./delcher.cc.004t.gimple
GKD
./delcher.o.gkd
OBJ
obj: ./delcher.o
unassigned
gene.cc
Gimple
./gene.cc.004t.gimple
GKD
./gene.o.gkd
OBJ
obj: ./gene.o
unassigned
icm.cc
Gimple
./icm.cc.004t.gimple
GKD
./icm.o.gkd
OBJ
obj: ./icm.o
includes
score-fixed.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
./icm.hh
../headers//usr/include/c++/4.9/iostream
../headers//work/tigr-glimmer-3.02/src/Common/exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//work/tigr-glimmer-3.02/src/Common/delcher.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/getopt.h
../headers//work/tigr-glimmer-3.02/src/Common/xlate_tables.hh
../headers//work/tigr-glimmer-3.02/src/Common/gene.hh
delcher.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/iostream
./exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/c++/4.9/new
unassigned
./exceptions.hh
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
gene.cc
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
./gene.hh
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/iostream
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/exception
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./delcher.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
./xlate_tables.hh
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/assert.h
unassigned
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
icm.cc
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/ctype.h
../headers//usr/include/string.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/iostream
../headers//work/tigr-glimmer-3.02/src/Common/exceptions.hh
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/_G_config.h
../headers//usr/include/stdlib.h
../headers//usr/include/time.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/cstring
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//work/tigr-glimmer-3.02/src/Common/delcher.hh
./icm.hh
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//work/tigr-glimmer-3.02/src/Common/xlate_tables.hh
../headers//work/tigr-glimmer-3.02/src/Common/gene.hh
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/assert.h
libraries
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual