soapdenovo2 - amd64

unassigned

build_edge.cpp

Gimple

./build_edge.cpp.004t.gimple

GKD

./build_edge.o.gkd

OBJ

obj: ./build_edge.o

unassigned

build_graph.cpp

Gimple

./build_graph.cpp.004t.gimple

GKD

./build_graph.o.gkd

OBJ

obj: ./build_graph.o

build_preArc.cpp

Gimple

./build_preArc.cpp.004t.gimple

GKD

./build_preArc.o.gkd

OBJ

obj: ./build_preArc.o

unassigned

convert_soapdenovo.cpp

Gimple

./convert_soapdenovo.cpp.004t.gimple

GKD

./convert_soapdenovo.o.gkd

OBJ

obj: ./convert_soapdenovo.o

global.cpp

Gimple

./global.cpp.004t.gimple

GKD

./global.o.gkd

OBJ

obj: ./global.o

unassigned

io_func.cpp

Gimple

./io_func.cpp.004t.gimple

GKD

./io_func.o.gkd

OBJ

obj: ./io_func.o

multi_threads.cpp

Gimple

./multi_threads.cpp.004t.gimple

GKD

./multi_threads.o.gkd

OBJ

obj: ./multi_threads.o

pregraph_sparse.cpp

Gimple

./pregraph_sparse.cpp.004t.gimple

GKD

./pregraph_sparse.o.gkd

OBJ

obj: ./pregraph_sparse.o

arc.c

Gimple

./arc.c.004t.gimple

GKD

./arc.o.gkd

OBJ

obj: ./arc.o

attachPEinfo.c

Gimple

./attachPEinfo.c.004t.gimple

GKD

./attachPEinfo.o.gkd

OBJ

obj: ./attachPEinfo.o

bubble.c

Gimple

./bubble.c.004t.gimple

GKD

./bubble.o.gkd

OBJ

obj: ./bubble.o

check.c

Gimple

./check.c.004t.gimple

GKD

./check.o.gkd

OBJ

obj: ./check.o

compactEdge.c

Gimple

./compactEdge.c.004t.gimple

GKD

./compactEdge.o.gkd

OBJ

obj: ./compactEdge.o

concatenateEdge.c

Gimple

./concatenateEdge.c.004t.gimple

GKD

./concatenateEdge.o.gkd

OBJ

obj: ./concatenateEdge.o

connect.c

Gimple

./connect.c.004t.gimple

GKD

./connect.o.gkd

OBJ

obj: ./connect.o

contig.c

Gimple

./contig.c.004t.gimple

GKD

./contig.o.gkd

OBJ

obj: ./contig.o

cutTipPreGraph.c

Gimple

./cutTipPreGraph.c.004t.gimple

GKD

./cutTipPreGraph.o.gkd

OBJ

obj: ./cutTipPreGraph.o

cutTip_graph.c

Gimple

./cutTip_graph.c.004t.gimple

GKD

./cutTip_graph.o.gkd

OBJ

obj: ./cutTip_graph.o

cutTip_graph2.c

Gimple

./cutTip_graph2.c.004t.gimple

GKD

./cutTip_graph2.o.gkd

OBJ

obj: ./cutTip_graph2.o

darray.c

Gimple

./darray.c.004t.gimple

GKD

./darray.o.gkd

OBJ

obj: ./darray.o

dfib.c

Gimple

./dfib.c.004t.gimple

GKD

./dfib.o.gkd

OBJ

obj: ./dfib.o

dfibHeap.c

Gimple

./dfibHeap.c.004t.gimple

GKD

./dfibHeap.o.gkd

OBJ

obj: ./dfibHeap.o

fib.c

Gimple

./fib.c.004t.gimple

GKD

./fib.o.gkd

OBJ

obj: ./fib.o

fibHeap.c

Gimple

./fibHeap.c.004t.gimple

GKD

./fibHeap.o.gkd

OBJ

obj: ./fibHeap.o

hashFunction.c

Gimple

./hashFunction.c.004t.gimple

GKD

./hashFunction.o.gkd

OBJ

obj: ./hashFunction.o

iterate.c

Gimple

./iterate.c.004t.gimple

GKD

./iterate.o.gkd

OBJ

obj: ./iterate.o

kmer.c

Gimple

./kmer.c.004t.gimple

GKD

./kmer.o.gkd

OBJ

obj: ./kmer.o

kmerhash.c

Gimple

./kmerhash.c.004t.gimple

GKD

./kmerhash.o.gkd

OBJ

obj: ./kmerhash.o

lib.c

Gimple

./lib.c.004t.gimple

GKD

./lib.o.gkd

OBJ

obj: ./lib.o

linearEdge.c

Gimple

./linearEdge.c.004t.gimple

GKD

./linearEdge.o.gkd

OBJ

obj: ./linearEdge.o

loadGraph.c

Gimple

./loadGraph.c.004t.gimple

GKD

./loadGraph.o.gkd

OBJ

obj: ./loadGraph.o

loadPath.c

Gimple

./loadPath.c.004t.gimple

GKD

./loadPath.o.gkd

OBJ

obj: ./loadPath.o

loadPreGraph.c

Gimple

./loadPreGraph.c.004t.gimple

GKD

./loadPreGraph.o.gkd

OBJ

obj: ./loadPreGraph.o

localAsm.c

Gimple

./localAsm.c.004t.gimple

GKD

./localAsm.o.gkd

OBJ

obj: ./localAsm.o

main.c

Gimple

./main.c.004t.gimple

GKD

./main.o.gkd

OBJ

obj: ./main.o

map.c

Gimple

./map.c.004t.gimple

GKD

./map.o.gkd

OBJ

obj: ./map.o

mem_manager.c

Gimple

./mem_manager.c.004t.gimple

GKD

./mem_manager.o.gkd

OBJ

obj: ./mem_manager.o

newhash.c

Gimple

./newhash.c.004t.gimple

GKD

./newhash.o.gkd

OBJ

obj: ./newhash.o

node2edge.c

Gimple

./node2edge.c.004t.gimple

GKD

./node2edge.o.gkd

OBJ

obj: ./node2edge.o

orderContig.c

Gimple

./orderContig.c.004t.gimple

GKD

./orderContig.o.gkd

OBJ

obj: ./orderContig.o

output_contig.c

Gimple

./output_contig.c.004t.gimple

GKD

./output_contig.o.gkd

OBJ

obj: ./output_contig.o

output_pregraph.c

Gimple

./output_pregraph.c.004t.gimple

GKD

./output_pregraph.o.gkd

OBJ

obj: ./output_pregraph.o

output_scaffold.c

Gimple

./output_scaffold.c.004t.gimple

GKD

./output_scaffold.o.gkd

OBJ

obj: ./output_scaffold.o

pregraph.c

Gimple

./pregraph.c.004t.gimple

GKD

./pregraph.o.gkd

OBJ

obj: ./pregraph.o

prlHashCtg.c

Gimple

./prlHashCtg.c.004t.gimple

GKD

./prlHashCtg.o.gkd

OBJ

obj: ./prlHashCtg.o

prlHashReads.c

Gimple

./prlHashReads.c.004t.gimple

GKD

./prlHashReads.o.gkd

OBJ

obj: ./prlHashReads.o

prlRead2Ctg.c

Gimple

./prlRead2Ctg.c.004t.gimple

GKD

./prlRead2Ctg.o.gkd

OBJ

obj: ./prlRead2Ctg.o

prlRead2path.c

Gimple

./prlRead2path.c.004t.gimple

GKD

./prlRead2path.o.gkd

OBJ

obj: ./prlRead2path.o

prlReadFillGap.c

Gimple

./prlReadFillGap.c.004t.gimple

GKD

./prlReadFillGap.o.gkd

OBJ

obj: ./prlReadFillGap.o

read2edge.c

Gimple

./read2edge.c.004t.gimple

GKD

./read2edge.o.gkd

OBJ

obj: ./read2edge.o

read2scaf.c

Gimple

./read2scaf.c.004t.gimple

GKD

./read2scaf.o.gkd

OBJ

obj: ./read2scaf.o

readInterval.c

Gimple

./readInterval.c.004t.gimple

GKD

./readInterval.o.gkd

OBJ

obj: ./readInterval.o

readseq1by1.c

Gimple

./readseq1by1.c.004t.gimple

GKD

./readseq1by1.o.gkd

OBJ

obj: ./readseq1by1.o

scaffold.c

Gimple

./scaffold.c.004t.gimple

GKD

./scaffold.o.gkd

OBJ

obj: ./scaffold.o

searchPath.c

Gimple

./searchPath.c.004t.gimple

GKD

./searchPath.o.gkd

OBJ

obj: ./searchPath.o

seq.c

Gimple

./seq.c.004t.gimple

GKD

./seq.o.gkd

OBJ

obj: ./seq.o

splitReps.c

Gimple

./splitReps.c.004t.gimple

GKD

./splitReps.o.gkd

OBJ

obj: ./splitReps.o

stack.c

Gimple

./stack.c.004t.gimple

GKD

./stack.o.gkd

OBJ

obj: ./stack.o

includes

unassigned

../headers//usr/include/c++/4.9/bits/locale_facets.h

build_edge.cpp

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ./inc/seq_util.h ./inc/sparse_kmer.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/bits/list.tcc ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/fstream.tcc ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/ostream_insert.h ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ./inc/core.h ./inc/build_edge.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ./inc/seq_util.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h

build_graph.cpp

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/basic_ios.h ./inc/core.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/istream ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/stdlib.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/fstream.tcc ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/ostream_insert.h ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h ./inc/global.h ../headers//usr/include/string.h ../headers//usr/include/pthread.h ./inc/io_func.h

build_preArc.cpp

./inc/seq_util.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ./inc/sparse_kmer.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ./inc/core.h ./inc/io_func.h ./inc/build_preArc.h ./inc/multi_threads.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h ./inc/global.h ./inc/sam_view.h ../headers//usr/include/pthread.h ../headers//usr/include/unistd.h ../headers//usr/include/string.h

unassigned

./inc/seq_util.h

convert_soapdenovo.cpp

../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ./inc/core.h ../headers//usr/include/zlib.h ./inc/sparse_kmer.h ./inc/global.h

global.cpp

../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ../headers//usr/include/c++/4.9/new

unassigned

../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h

io_func.cpp

./inc/sam_view.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/istream ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/fstream.tcc ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ./inc/io_func.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/c++/4.9/new ./inc/global.h ../headers//usr/include/string.h ../headers//usr/include/unistd.h

multi_threads.cpp

../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ./inc/multi_threads.h ./inc/core.h ./inc/build_preArc.h ./inc/global.h ../headers//usr/include/pthread.h ../headers//usr/include/unistd.h ../headers//usr/include/c++/4.9/new

pregraph_sparse.cpp

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/stdlib.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ./inc/core.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ./inc/io_func.h ./inc/multi_threads.h ./inc/build_preArc.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h ./inc/global.h ../headers//usr/include/getopt.h ../headers//usr/include/pthread.h ./inc/build_graph.h ../headers//usr/include/unistd.h ./inc/build_edge.h ./inc/convert_soapdenovo.h ../headers//usr/include/x86_64-linux-gnu/bits/confname.h

arc.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc2.h ../headers/inc/check.h ../headers//usr/include/stdlib.h

attachPEinfo.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/stdlib.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers//usr/include/zlib.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h ../headers/inc/extfunc.h

bubble.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/dfibHeap.h ../headers//usr/include/stdlib.h ../headers/inc/check.h

check.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers//usr/include/string.h ../headers//usr/include/stdlib.h

compactEdge.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers//usr/include/stdlib.h ../headers/inc/extfunc.h

concatenateEdge.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/stdlib.h

connect.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc2.h ../headers/inc/check.h ../headers//usr/include/stdlib.h

contig.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers/inc/def2.h ../headers/inc/def.h ../headers//usr/include/getopt.h ../headers/inc/extvab.h ../headers/inc/extfunc.h

cutTipPreGraph.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers//usr/include/stdlib.h ../headers//usr/include/unistd.h ../headers//usr/include/pthread.h ../headers/inc/check.h

cutTip_graph.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h

cutTip_graph2.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h

darray.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/darray.h ../headers//usr/include/stdlib.h ../headers/inc/check.h

dfib.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/dfibpriv.h ../headers//usr/include/stdlib.h ../headers/inc/extfunc2.h

dfibHeap.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers//usr/include/stdio.h ../headers/inc/dfib.h

fib.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/fibpriv.h ../headers/inc/fib.h ../headers//usr/include/stdio.h ../headers/inc/extfunc2.h ../headers//usr/include/stdlib.h

fibHeap.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers//usr/include/stdio.h ../headers/inc/fib.h

hashFunction.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers/inc/types.h ../headers//usr/include/stdint.h ../headers/inc/def.h ../headers//usr/include/stdio.h

iterate.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers//usr/include/stdlib.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/def.h ../headers/inc/kmerhash.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h

kmer.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/types.h ../headers//usr/include/zlib.h ../headers/inc/def.h ../headers/inc/extvab.h

kmerhash.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/def.h ../headers/inc/kmerhash.h ../headers/inc/extvab.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h ../headers/inc/extfunc.h

lib.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers/inc/def2.h ../headers//usr/include/stdint.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers//usr/include/string.h ../headers/inc/check.h

linearEdge.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers//usr/include/stdlib.h ../headers/inc/check.h

loadGraph.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/string.h

loadPath.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/string.h

loadPreGraph.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers//usr/include/zlib.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/string.h

localAsm.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/stack.h ../headers/inc/darray.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/stdlib.h

main.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/stack.h ../headers/inc/darray.h ../headers//usr/include/stdint.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/kmerhash.h ../headers//usr/include/getopt.h ../headers/inc/global.h ../headers/inc/extfunc.h

map.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers//usr/include/getopt.h ../headers/inc/extvab.h ../headers/inc/extfunc.h

mem_manager.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers//usr/include/stdio.h ../headers/inc/def.h ../headers/inc/check.h ../headers//usr/include/stdlib.h

newhash.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h ../headers//usr/include/stdlib.h ../headers/inc/extfunc.h

node2edge.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/stack.h ../headers//usr/include/zlib.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers//usr/include/stdlib.h ../headers/inc/check.h

orderContig.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/stdlib.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers/inc/darray.h ../headers//usr/include/zlib.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/fibHeap.h ../headers/inc/check.h

output_contig.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/check.h ../headers/inc/extfunc.h ../headers//usr/include/stdlib.h

output_pregraph.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/types.h ../headers//usr/include/zlib.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h

output_scaffold.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/check.h

pregraph.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers//usr/include/getopt.h ../headers/inc/extvab.h ../headers/inc/extfunc.h

prlHashCtg.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers//usr/include/unistd.h ../headers/inc/extfunc.h ../headers//usr/include/pthread.h ../headers/inc/check.h

prlHashReads.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers/inc/def2.h ../headers/inc/types.h ../headers//usr/include/stdint.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers/inc/def.h ../headers//usr/include/x86_64-linux-gnu/bits/siginfo.h ../headers//usr/include/aio.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers//usr/include/unistd.h ../headers/inc/extfunc.h ../headers//usr/include/string.h ../headers//usr/include/pthread.h ../headers//usr/include/stdlib.h ../headers/inc/check.h ../headers//usr/include/x86_64-linux-gnu/bits/errno.h

prlRead2Ctg.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/stack.h ../headers//usr/include/stdint.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers//usr/include/unistd.h ../headers/inc/extfunc.h ../headers//usr/include/pthread.h ../headers//usr/include/stdlib.h ../headers/inc/check.h

prlRead2path.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers/inc/def2.h ../headers/inc/types.h ../headers//usr/include/stdint.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers/inc/def.h ../headers//usr/include/x86_64-linux-gnu/bits/siginfo.h ../headers//usr/include/aio.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers//usr/include/unistd.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/pthread.h ../headers//usr/include/stdlib.h ../headers/inc/extfunc2.h

prlReadFillGap.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers/inc/darray.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/check.h ../headers/inc/extfunc.h ../headers//usr/include/unistd.h ../headers//usr/include/pthread.h ../headers//usr/include/string.h

read2edge.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers/inc/def2.h ../headers/inc/types.h ../headers//usr/include/stdint.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers/inc/def.h ../headers/inc/kmerhash.h ../headers/inc/extvab.h ../headers//usr/include/unistd.h ../headers/inc/extfunc.h ../headers//usr/include/pthread.h ../headers//usr/include/stdlib.h ../headers/inc/check.h ../headers//usr/include/string.h

read2scaf.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/stdlib.h

readInterval.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc2.h

readseq1by1.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers/inc/sam_view.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers/inc/def2.h ../headers//usr/include/stdint.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/check.h ../headers//usr/include/string.h ../headers/inc/extfunc.h

scaffold.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers/inc/def2.h ../headers//usr/include/getopt.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h

searchPath.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/stack.h ../headers/inc/def.h ../headers/inc/extvab.h

seq.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def.h ../headers/inc/check.h

splitReps.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/stdlib.h

stack.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers/inc/stack.h ../headers//usr/include/stdio.h ../headers//usr/include/stdlib.h

unassigned

build_edge.cpp

Gimple

./build_edge.cpp.004t.gimple

GKD

./build_edge.o.gkd

OBJ

obj: ./build_edge.o

unassigned

build_graph.cpp

Gimple

./build_graph.cpp.004t.gimple

GKD

./build_graph.o.gkd

OBJ

obj: ./build_graph.o

build_preArc.cpp

Gimple

./build_preArc.cpp.004t.gimple

GKD

./build_preArc.o.gkd

OBJ

obj: ./build_preArc.o

unassigned

convert_soapdenovo.cpp

Gimple

./convert_soapdenovo.cpp.004t.gimple

GKD

./convert_soapdenovo.o.gkd

OBJ

obj: ./convert_soapdenovo.o

global.cpp

Gimple

./global.cpp.004t.gimple

GKD

./global.o.gkd

OBJ

obj: ./global.o

unassigned

io_func.cpp

Gimple

./io_func.cpp.004t.gimple

GKD

./io_func.o.gkd

OBJ

obj: ./io_func.o

multi_threads.cpp

Gimple

./multi_threads.cpp.004t.gimple

GKD

./multi_threads.o.gkd

OBJ

obj: ./multi_threads.o

pregraph_sparse.cpp

Gimple

./pregraph_sparse.cpp.004t.gimple

GKD

./pregraph_sparse.o.gkd

OBJ

obj: ./pregraph_sparse.o

arc.c

Gimple

./arc.c.004t.gimple

GKD

./arc.o.gkd

OBJ

obj: ./arc.o

attachPEinfo.c

Gimple

./attachPEinfo.c.004t.gimple

GKD

./attachPEinfo.o.gkd

OBJ

obj: ./attachPEinfo.o

bubble.c

Gimple

./bubble.c.004t.gimple

GKD

./bubble.o.gkd

OBJ

obj: ./bubble.o

check.c

Gimple

./check.c.004t.gimple

GKD

./check.o.gkd

OBJ

obj: ./check.o

compactEdge.c

Gimple

./compactEdge.c.004t.gimple

GKD

./compactEdge.o.gkd

OBJ

obj: ./compactEdge.o

concatenateEdge.c

Gimple

./concatenateEdge.c.004t.gimple

GKD

./concatenateEdge.o.gkd

OBJ

obj: ./concatenateEdge.o

connect.c

Gimple

./connect.c.004t.gimple

GKD

./connect.o.gkd

OBJ

obj: ./connect.o

contig.c

Gimple

./contig.c.004t.gimple

GKD

./contig.o.gkd

OBJ

obj: ./contig.o

cutTipPreGraph.c

Gimple

./cutTipPreGraph.c.004t.gimple

GKD

./cutTipPreGraph.o.gkd

OBJ

obj: ./cutTipPreGraph.o

cutTip_graph.c

Gimple

./cutTip_graph.c.004t.gimple

GKD

./cutTip_graph.o.gkd

OBJ

obj: ./cutTip_graph.o

cutTip_graph2.c

Gimple

./cutTip_graph2.c.004t.gimple

GKD

./cutTip_graph2.o.gkd

OBJ

obj: ./cutTip_graph2.o

darray.c

Gimple

./darray.c.004t.gimple

GKD

./darray.o.gkd

OBJ

obj: ./darray.o

dfib.c

Gimple

./dfib.c.004t.gimple

GKD

./dfib.o.gkd

OBJ

obj: ./dfib.o

dfibHeap.c

Gimple

./dfibHeap.c.004t.gimple

GKD

./dfibHeap.o.gkd

OBJ

obj: ./dfibHeap.o

fib.c

Gimple

./fib.c.004t.gimple

GKD

./fib.o.gkd

OBJ

obj: ./fib.o

fibHeap.c

Gimple

./fibHeap.c.004t.gimple

GKD

./fibHeap.o.gkd

OBJ

obj: ./fibHeap.o

hashFunction.c

Gimple

./hashFunction.c.004t.gimple

GKD

./hashFunction.o.gkd

OBJ

obj: ./hashFunction.o

iterate.c

Gimple

./iterate.c.004t.gimple

GKD

./iterate.o.gkd

OBJ

obj: ./iterate.o

kmer.c

Gimple

./kmer.c.004t.gimple

GKD

./kmer.o.gkd

OBJ

obj: ./kmer.o

kmerhash.c

Gimple

./kmerhash.c.004t.gimple

GKD

./kmerhash.o.gkd

OBJ

obj: ./kmerhash.o

lib.c

Gimple

./lib.c.004t.gimple

GKD

./lib.o.gkd

OBJ

obj: ./lib.o

linearEdge.c

Gimple

./linearEdge.c.004t.gimple

GKD

./linearEdge.o.gkd

OBJ

obj: ./linearEdge.o

loadGraph.c

Gimple

./loadGraph.c.004t.gimple

GKD

./loadGraph.o.gkd

OBJ

obj: ./loadGraph.o

loadPath.c

Gimple

./loadPath.c.004t.gimple

GKD

./loadPath.o.gkd

OBJ

obj: ./loadPath.o

loadPreGraph.c

Gimple

./loadPreGraph.c.004t.gimple

GKD

./loadPreGraph.o.gkd

OBJ

obj: ./loadPreGraph.o

localAsm.c

Gimple

./localAsm.c.004t.gimple

GKD

./localAsm.o.gkd

OBJ

obj: ./localAsm.o

main.c

Gimple

./main.c.004t.gimple

GKD

./main.o.gkd

OBJ

obj: ./main.o

map.c

Gimple

./map.c.004t.gimple

GKD

./map.o.gkd

OBJ

obj: ./map.o

mem_manager.c

Gimple

./mem_manager.c.004t.gimple

GKD

./mem_manager.o.gkd

OBJ

obj: ./mem_manager.o

newhash.c

Gimple

./newhash.c.004t.gimple

GKD

./newhash.o.gkd

OBJ

obj: ./newhash.o

node2edge.c

Gimple

./node2edge.c.004t.gimple

GKD

./node2edge.o.gkd

OBJ

obj: ./node2edge.o

orderContig.c

Gimple

./orderContig.c.004t.gimple

GKD

./orderContig.o.gkd

OBJ

obj: ./orderContig.o

output_contig.c

Gimple

./output_contig.c.004t.gimple

GKD

./output_contig.o.gkd

OBJ

obj: ./output_contig.o

output_pregraph.c

Gimple

./output_pregraph.c.004t.gimple

GKD

./output_pregraph.o.gkd

OBJ

obj: ./output_pregraph.o

output_scaffold.c

Gimple

./output_scaffold.c.004t.gimple

GKD

./output_scaffold.o.gkd

OBJ

obj: ./output_scaffold.o

pregraph.c

Gimple

./pregraph.c.004t.gimple

GKD

./pregraph.o.gkd

OBJ

obj: ./pregraph.o

prlHashCtg.c

Gimple

./prlHashCtg.c.004t.gimple

GKD

./prlHashCtg.o.gkd

OBJ

obj: ./prlHashCtg.o

prlHashReads.c

Gimple

./prlHashReads.c.004t.gimple

GKD

./prlHashReads.o.gkd

OBJ

obj: ./prlHashReads.o

prlRead2Ctg.c

Gimple

./prlRead2Ctg.c.004t.gimple

GKD

./prlRead2Ctg.o.gkd

OBJ

obj: ./prlRead2Ctg.o

prlRead2path.c

Gimple

./prlRead2path.c.004t.gimple

GKD

./prlRead2path.o.gkd

OBJ

obj: ./prlRead2path.o

prlReadFillGap.c

Gimple

./prlReadFillGap.c.004t.gimple

GKD

./prlReadFillGap.o.gkd

OBJ

obj: ./prlReadFillGap.o

read2edge.c

Gimple

./read2edge.c.004t.gimple

GKD

./read2edge.o.gkd

OBJ

obj: ./read2edge.o

read2scaf.c

Gimple

./read2scaf.c.004t.gimple

GKD

./read2scaf.o.gkd

OBJ

obj: ./read2scaf.o

readInterval.c

Gimple

./readInterval.c.004t.gimple

GKD

./readInterval.o.gkd

OBJ

obj: ./readInterval.o

readseq1by1.c

Gimple

./readseq1by1.c.004t.gimple

GKD

./readseq1by1.o.gkd

OBJ

obj: ./readseq1by1.o

scaffold.c

Gimple

./scaffold.c.004t.gimple

GKD

./scaffold.o.gkd

OBJ

obj: ./scaffold.o

searchPath.c

Gimple

./searchPath.c.004t.gimple

GKD

./searchPath.o.gkd

OBJ

obj: ./searchPath.o

seq.c

Gimple

./seq.c.004t.gimple

GKD

./seq.o.gkd

OBJ

obj: ./seq.o

splitReps.c

Gimple

./splitReps.c.004t.gimple

GKD

./splitReps.o.gkd

OBJ

obj: ./splitReps.o

stack.c

Gimple

./stack.c.004t.gimple

GKD

./stack.o.gkd

OBJ

obj: ./stack.o

includes

unassigned

../headers//usr/include/c++/4.9/bits/locale_facets.h

build_edge.cpp

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ./inc/seq_util.h ./inc/sparse_kmer.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/bits/list.tcc ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/fstream.tcc ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/ostream_insert.h ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ./inc/core.h ./inc/build_edge.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ./inc/seq_util.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h

build_graph.cpp

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/basic_ios.h ./inc/core.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/istream ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/stdlib.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/fstream.tcc ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/ostream_insert.h ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h ./inc/global.h ../headers//usr/include/string.h ../headers//usr/include/pthread.h ./inc/io_func.h

build_preArc.cpp

./inc/seq_util.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ./inc/sparse_kmer.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ./inc/core.h ./inc/io_func.h ./inc/build_preArc.h ./inc/multi_threads.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h ./inc/global.h ./inc/sam_view.h ../headers//usr/include/pthread.h ../headers//usr/include/unistd.h ../headers//usr/include/string.h

unassigned

./inc/seq_util.h

convert_soapdenovo.cpp

../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ./inc/core.h ../headers//usr/include/zlib.h ./inc/sparse_kmer.h ./inc/global.h

global.cpp

../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ../headers//usr/include/c++/4.9/new

unassigned

../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h

io_func.cpp

./inc/sam_view.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/istream ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/fstream.tcc ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ./inc/io_func.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/c++/4.9/new ./inc/global.h ../headers//usr/include/string.h ../headers//usr/include/unistd.h

multi_threads.cpp

../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ./inc/multi_threads.h ./inc/core.h ./inc/build_preArc.h ./inc/global.h ../headers//usr/include/pthread.h ../headers//usr/include/unistd.h ../headers//usr/include/c++/4.9/new

pregraph_sparse.cpp

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/stdlib.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ./inc/core.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ./inc/io_func.h ./inc/multi_threads.h ./inc/build_preArc.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h ./inc/global.h ../headers//usr/include/getopt.h ../headers//usr/include/pthread.h ./inc/build_graph.h ../headers//usr/include/unistd.h ./inc/build_edge.h ./inc/convert_soapdenovo.h ../headers//usr/include/x86_64-linux-gnu/bits/confname.h

arc.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc2.h ../headers/inc/check.h ../headers//usr/include/stdlib.h

attachPEinfo.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/stdlib.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers//usr/include/zlib.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h ../headers/inc/extfunc.h

bubble.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/dfibHeap.h ../headers//usr/include/stdlib.h ../headers/inc/check.h

check.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers//usr/include/string.h ../headers//usr/include/stdlib.h

compactEdge.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers//usr/include/stdlib.h ../headers/inc/extfunc.h

concatenateEdge.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/stdlib.h

connect.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc2.h ../headers/inc/check.h ../headers//usr/include/stdlib.h

contig.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers/inc/def2.h ../headers/inc/def.h ../headers//usr/include/getopt.h ../headers/inc/extvab.h ../headers/inc/extfunc.h

cutTipPreGraph.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers//usr/include/stdlib.h ../headers//usr/include/unistd.h ../headers//usr/include/pthread.h ../headers/inc/check.h

cutTip_graph.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h

cutTip_graph2.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h

darray.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/darray.h ../headers//usr/include/stdlib.h ../headers/inc/check.h

dfib.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/dfibpriv.h ../headers//usr/include/stdlib.h ../headers/inc/extfunc2.h

dfibHeap.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers//usr/include/stdio.h ../headers/inc/dfib.h

fib.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/fibpriv.h ../headers/inc/fib.h ../headers//usr/include/stdio.h ../headers/inc/extfunc2.h ../headers//usr/include/stdlib.h

fibHeap.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers//usr/include/stdio.h ../headers/inc/fib.h

hashFunction.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers/inc/types.h ../headers//usr/include/stdint.h ../headers/inc/def.h ../headers//usr/include/stdio.h

iterate.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers//usr/include/stdlib.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/def.h ../headers/inc/kmerhash.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h

kmer.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/types.h ../headers//usr/include/zlib.h ../headers/inc/def.h ../headers/inc/extvab.h

kmerhash.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/def.h ../headers/inc/kmerhash.h ../headers/inc/extvab.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h ../headers/inc/extfunc.h

lib.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers/inc/def2.h ../headers//usr/include/stdint.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers//usr/include/string.h ../headers/inc/check.h

linearEdge.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers//usr/include/stdlib.h ../headers/inc/check.h

loadGraph.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/string.h

loadPath.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/string.h

loadPreGraph.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers//usr/include/zlib.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/string.h

localAsm.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/stack.h ../headers/inc/darray.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/stdlib.h

main.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/stack.h ../headers/inc/darray.h ../headers//usr/include/stdint.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/kmerhash.h ../headers//usr/include/getopt.h ../headers/inc/global.h ../headers/inc/extfunc.h

map.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers//usr/include/getopt.h ../headers/inc/extvab.h ../headers/inc/extfunc.h

mem_manager.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers//usr/include/stdio.h ../headers/inc/def.h ../headers/inc/check.h ../headers//usr/include/stdlib.h

newhash.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h ../headers//usr/include/stdlib.h ../headers/inc/extfunc.h

node2edge.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/stack.h ../headers//usr/include/zlib.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers//usr/include/stdlib.h ../headers/inc/check.h

orderContig.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/stdlib.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers/inc/darray.h ../headers//usr/include/zlib.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/fibHeap.h ../headers/inc/check.h

output_contig.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/check.h ../headers/inc/extfunc.h ../headers//usr/include/stdlib.h

output_pregraph.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/types.h ../headers//usr/include/zlib.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h

output_scaffold.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/check.h

pregraph.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers//usr/include/getopt.h ../headers/inc/extvab.h ../headers/inc/extfunc.h

prlHashCtg.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers//usr/include/unistd.h ../headers/inc/extfunc.h ../headers//usr/include/pthread.h ../headers/inc/check.h

prlHashReads.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers/inc/def2.h ../headers/inc/types.h ../headers//usr/include/stdint.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers/inc/def.h ../headers//usr/include/x86_64-linux-gnu/bits/siginfo.h ../headers//usr/include/aio.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers//usr/include/unistd.h ../headers/inc/extfunc.h ../headers//usr/include/string.h ../headers//usr/include/pthread.h ../headers//usr/include/stdlib.h ../headers/inc/check.h ../headers//usr/include/x86_64-linux-gnu/bits/errno.h

prlRead2Ctg.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/stack.h ../headers//usr/include/stdint.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers//usr/include/unistd.h ../headers/inc/extfunc.h ../headers//usr/include/pthread.h ../headers//usr/include/stdlib.h ../headers/inc/check.h

prlRead2path.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers/inc/def2.h ../headers/inc/types.h ../headers//usr/include/stdint.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers/inc/def.h ../headers//usr/include/x86_64-linux-gnu/bits/siginfo.h ../headers//usr/include/aio.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers//usr/include/unistd.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/pthread.h ../headers//usr/include/stdlib.h ../headers/inc/extfunc2.h

prlReadFillGap.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers/inc/darray.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/check.h ../headers/inc/extfunc.h ../headers//usr/include/unistd.h ../headers//usr/include/pthread.h ../headers//usr/include/string.h

read2edge.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers/inc/def2.h ../headers/inc/types.h ../headers//usr/include/stdint.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers/inc/def.h ../headers/inc/kmerhash.h ../headers/inc/extvab.h ../headers//usr/include/unistd.h ../headers/inc/extfunc.h ../headers//usr/include/pthread.h ../headers//usr/include/stdlib.h ../headers/inc/check.h ../headers//usr/include/string.h

read2scaf.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/stdlib.h

readInterval.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc2.h

readseq1by1.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers/inc/sam_view.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers/inc/def2.h ../headers//usr/include/stdint.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/check.h ../headers//usr/include/string.h ../headers/inc/extfunc.h

scaffold.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers/inc/def2.h ../headers//usr/include/getopt.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h

searchPath.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/stack.h ../headers/inc/def.h ../headers/inc/extvab.h

seq.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def.h ../headers/inc/check.h

splitReps.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/stdlib.h

stack.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers/inc/stack.h ../headers//usr/include/stdio.h ../headers//usr/include/stdlib.h

unassigned

build_edge.cpp

Gimple

./build_edge.cpp.004t.gimple

GKD

./build_edge.o.gkd

OBJ

obj: ./build_edge.o

unassigned

build_graph.cpp

Gimple

./build_graph.cpp.004t.gimple

GKD

./build_graph.o.gkd

OBJ

obj: ./build_graph.o

build_preArc.cpp

Gimple

./build_preArc.cpp.004t.gimple

GKD

./build_preArc.o.gkd

OBJ

obj: ./build_preArc.o

unassigned

convert_soapdenovo.cpp

Gimple

./convert_soapdenovo.cpp.004t.gimple

GKD

./convert_soapdenovo.o.gkd

OBJ

obj: ./convert_soapdenovo.o

global.cpp

Gimple

./global.cpp.004t.gimple

GKD

./global.o.gkd

OBJ

obj: ./global.o

unassigned

io_func.cpp

Gimple

./io_func.cpp.004t.gimple

GKD

./io_func.o.gkd

OBJ

obj: ./io_func.o

multi_threads.cpp

Gimple

./multi_threads.cpp.004t.gimple

GKD

./multi_threads.o.gkd

OBJ

obj: ./multi_threads.o

pregraph_sparse.cpp

Gimple

./pregraph_sparse.cpp.004t.gimple

GKD

./pregraph_sparse.o.gkd

OBJ

obj: ./pregraph_sparse.o

arc.c

Gimple

./arc.c.004t.gimple

GKD

./arc.o.gkd

OBJ

obj: ./arc.o

attachPEinfo.c

Gimple

./attachPEinfo.c.004t.gimple

GKD

./attachPEinfo.o.gkd

OBJ

obj: ./attachPEinfo.o

bubble.c

Gimple

./bubble.c.004t.gimple

GKD

./bubble.o.gkd

OBJ

obj: ./bubble.o

check.c

Gimple

./check.c.004t.gimple

GKD

./check.o.gkd

OBJ

obj: ./check.o

compactEdge.c

Gimple

./compactEdge.c.004t.gimple

GKD

./compactEdge.o.gkd

OBJ

obj: ./compactEdge.o

concatenateEdge.c

Gimple

./concatenateEdge.c.004t.gimple

GKD

./concatenateEdge.o.gkd

OBJ

obj: ./concatenateEdge.o

connect.c

Gimple

./connect.c.004t.gimple

GKD

./connect.o.gkd

OBJ

obj: ./connect.o

contig.c

Gimple

./contig.c.004t.gimple

GKD

./contig.o.gkd

OBJ

obj: ./contig.o

cutTipPreGraph.c

Gimple

./cutTipPreGraph.c.004t.gimple

GKD

./cutTipPreGraph.o.gkd

OBJ

obj: ./cutTipPreGraph.o

cutTip_graph.c

Gimple

./cutTip_graph.c.004t.gimple

GKD

./cutTip_graph.o.gkd

OBJ

obj: ./cutTip_graph.o

cutTip_graph2.c

Gimple

./cutTip_graph2.c.004t.gimple

GKD

./cutTip_graph2.o.gkd

OBJ

obj: ./cutTip_graph2.o

darray.c

Gimple

./darray.c.004t.gimple

GKD

./darray.o.gkd

OBJ

obj: ./darray.o

dfib.c

Gimple

./dfib.c.004t.gimple

GKD

./dfib.o.gkd

OBJ

obj: ./dfib.o

dfibHeap.c

Gimple

./dfibHeap.c.004t.gimple

GKD

./dfibHeap.o.gkd

OBJ

obj: ./dfibHeap.o

fib.c

Gimple

./fib.c.004t.gimple

GKD

./fib.o.gkd

OBJ

obj: ./fib.o

fibHeap.c

Gimple

./fibHeap.c.004t.gimple

GKD

./fibHeap.o.gkd

OBJ

obj: ./fibHeap.o

hashFunction.c

Gimple

./hashFunction.c.004t.gimple

GKD

./hashFunction.o.gkd

OBJ

obj: ./hashFunction.o

iterate.c

Gimple

./iterate.c.004t.gimple

GKD

./iterate.o.gkd

OBJ

obj: ./iterate.o

kmer.c

Gimple

./kmer.c.004t.gimple

GKD

./kmer.o.gkd

OBJ

obj: ./kmer.o

kmerhash.c

Gimple

./kmerhash.c.004t.gimple

GKD

./kmerhash.o.gkd

OBJ

obj: ./kmerhash.o

lib.c

Gimple

./lib.c.004t.gimple

GKD

./lib.o.gkd

OBJ

obj: ./lib.o

linearEdge.c

Gimple

./linearEdge.c.004t.gimple

GKD

./linearEdge.o.gkd

OBJ

obj: ./linearEdge.o

loadGraph.c

Gimple

./loadGraph.c.004t.gimple

GKD

./loadGraph.o.gkd

OBJ

obj: ./loadGraph.o

loadPath.c

Gimple

./loadPath.c.004t.gimple

GKD

./loadPath.o.gkd

OBJ

obj: ./loadPath.o

loadPreGraph.c

Gimple

./loadPreGraph.c.004t.gimple

GKD

./loadPreGraph.o.gkd

OBJ

obj: ./loadPreGraph.o

localAsm.c

Gimple

./localAsm.c.004t.gimple

GKD

./localAsm.o.gkd

OBJ

obj: ./localAsm.o

main.c

Gimple

./main.c.004t.gimple

GKD

./main.o.gkd

OBJ

obj: ./main.o

map.c

Gimple

./map.c.004t.gimple

GKD

./map.o.gkd

OBJ

obj: ./map.o

mem_manager.c

Gimple

./mem_manager.c.004t.gimple

GKD

./mem_manager.o.gkd

OBJ

obj: ./mem_manager.o

newhash.c

Gimple

./newhash.c.004t.gimple

GKD

./newhash.o.gkd

OBJ

obj: ./newhash.o

node2edge.c

Gimple

./node2edge.c.004t.gimple

GKD

./node2edge.o.gkd

OBJ

obj: ./node2edge.o

orderContig.c

Gimple

./orderContig.c.004t.gimple

GKD

./orderContig.o.gkd

OBJ

obj: ./orderContig.o

output_contig.c

Gimple

./output_contig.c.004t.gimple

GKD

./output_contig.o.gkd

OBJ

obj: ./output_contig.o

output_pregraph.c

Gimple

./output_pregraph.c.004t.gimple

GKD

./output_pregraph.o.gkd

OBJ

obj: ./output_pregraph.o

output_scaffold.c

Gimple

./output_scaffold.c.004t.gimple

GKD

./output_scaffold.o.gkd

OBJ

obj: ./output_scaffold.o

pregraph.c

Gimple

./pregraph.c.004t.gimple

GKD

./pregraph.o.gkd

OBJ

obj: ./pregraph.o

prlHashCtg.c

Gimple

./prlHashCtg.c.004t.gimple

GKD

./prlHashCtg.o.gkd

OBJ

obj: ./prlHashCtg.o

prlHashReads.c

Gimple

./prlHashReads.c.004t.gimple

GKD

./prlHashReads.o.gkd

OBJ

obj: ./prlHashReads.o

prlRead2Ctg.c

Gimple

./prlRead2Ctg.c.004t.gimple

GKD

./prlRead2Ctg.o.gkd

OBJ

obj: ./prlRead2Ctg.o

prlRead2path.c

Gimple

./prlRead2path.c.004t.gimple

GKD

./prlRead2path.o.gkd

OBJ

obj: ./prlRead2path.o

prlReadFillGap.c

Gimple

./prlReadFillGap.c.004t.gimple

GKD

./prlReadFillGap.o.gkd

OBJ

obj: ./prlReadFillGap.o

read2edge.c

Gimple

./read2edge.c.004t.gimple

GKD

./read2edge.o.gkd

OBJ

obj: ./read2edge.o

read2scaf.c

Gimple

./read2scaf.c.004t.gimple

GKD

./read2scaf.o.gkd

OBJ

obj: ./read2scaf.o

readInterval.c

Gimple

./readInterval.c.004t.gimple

GKD

./readInterval.o.gkd

OBJ

obj: ./readInterval.o

readseq1by1.c

Gimple

./readseq1by1.c.004t.gimple

GKD

./readseq1by1.o.gkd

OBJ

obj: ./readseq1by1.o

scaffold.c

Gimple

./scaffold.c.004t.gimple

GKD

./scaffold.o.gkd

OBJ

obj: ./scaffold.o

searchPath.c

Gimple

./searchPath.c.004t.gimple

GKD

./searchPath.o.gkd

OBJ

obj: ./searchPath.o

seq.c

Gimple

./seq.c.004t.gimple

GKD

./seq.o.gkd

OBJ

obj: ./seq.o

splitReps.c

Gimple

./splitReps.c.004t.gimple

GKD

./splitReps.o.gkd

OBJ

obj: ./splitReps.o

stack.c

Gimple

./stack.c.004t.gimple

GKD

./stack.o.gkd

OBJ

obj: ./stack.o

includes

unassigned

../headers//usr/include/c++/4.9/bits/locale_facets.h

build_edge.cpp

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ./inc/seq_util.h ./inc/sparse_kmer.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/bits/list.tcc ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/fstream.tcc ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/ostream_insert.h ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ./inc/core.h ./inc/build_edge.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ./inc/seq_util.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h

build_graph.cpp

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/basic_ios.h ./inc/core.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/istream ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/stdlib.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/fstream.tcc ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/ostream_insert.h ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h ./inc/global.h ../headers//usr/include/string.h ../headers//usr/include/pthread.h ./inc/io_func.h

build_preArc.cpp

./inc/seq_util.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ./inc/sparse_kmer.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ./inc/core.h ./inc/io_func.h ./inc/build_preArc.h ./inc/multi_threads.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h ./inc/global.h ./inc/sam_view.h ../headers//usr/include/pthread.h ../headers//usr/include/unistd.h ../headers//usr/include/string.h

unassigned

./inc/seq_util.h

convert_soapdenovo.cpp

../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ./inc/core.h ../headers//usr/include/zlib.h ./inc/sparse_kmer.h ./inc/global.h

global.cpp

../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ../headers//usr/include/c++/4.9/new

unassigned

../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h

io_func.cpp

./inc/sam_view.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/istream ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/fstream.tcc ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ./inc/io_func.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/c++/4.9/new ./inc/global.h ../headers//usr/include/string.h ../headers//usr/include/unistd.h

multi_threads.cpp

../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ./inc/multi_threads.h ./inc/core.h ./inc/build_preArc.h ./inc/global.h ../headers//usr/include/pthread.h ../headers//usr/include/unistd.h ../headers//usr/include/c++/4.9/new

pregraph_sparse.cpp

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/stdlib.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ./inc/core.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdint.h ./inc/stdinc.h ./inc/io_func.h ./inc/multi_threads.h ./inc/build_preArc.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h ./inc/global.h ../headers//usr/include/getopt.h ../headers//usr/include/pthread.h ./inc/build_graph.h ../headers//usr/include/unistd.h ./inc/build_edge.h ./inc/convert_soapdenovo.h ../headers//usr/include/x86_64-linux-gnu/bits/confname.h

arc.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc2.h ../headers/inc/check.h ../headers//usr/include/stdlib.h

attachPEinfo.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/stdlib.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers//usr/include/zlib.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h ../headers/inc/extfunc.h

bubble.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/dfibHeap.h ../headers//usr/include/stdlib.h ../headers/inc/check.h

check.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers//usr/include/string.h ../headers//usr/include/stdlib.h

compactEdge.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers//usr/include/stdlib.h ../headers/inc/extfunc.h

concatenateEdge.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/stdlib.h

connect.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc2.h ../headers/inc/check.h ../headers//usr/include/stdlib.h

contig.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers/inc/def2.h ../headers/inc/def.h ../headers//usr/include/getopt.h ../headers/inc/extvab.h ../headers/inc/extfunc.h

cutTipPreGraph.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers//usr/include/stdlib.h ../headers//usr/include/unistd.h ../headers//usr/include/pthread.h ../headers/inc/check.h

cutTip_graph.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h

cutTip_graph2.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h

darray.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/darray.h ../headers//usr/include/stdlib.h ../headers/inc/check.h

dfib.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/dfibpriv.h ../headers//usr/include/stdlib.h ../headers/inc/extfunc2.h

dfibHeap.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers//usr/include/stdio.h ../headers/inc/dfib.h

fib.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/fibpriv.h ../headers/inc/fib.h ../headers//usr/include/stdio.h ../headers/inc/extfunc2.h ../headers//usr/include/stdlib.h

fibHeap.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers//usr/include/stdio.h ../headers/inc/fib.h

hashFunction.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers/inc/types.h ../headers//usr/include/stdint.h ../headers/inc/def.h ../headers//usr/include/stdio.h

iterate.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers//usr/include/stdlib.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/def.h ../headers/inc/kmerhash.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h

kmer.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/types.h ../headers//usr/include/zlib.h ../headers/inc/def.h ../headers/inc/extvab.h

kmerhash.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/def.h ../headers/inc/kmerhash.h ../headers/inc/extvab.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h ../headers/inc/extfunc.h

lib.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers/inc/def2.h ../headers//usr/include/stdint.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers//usr/include/string.h ../headers/inc/check.h

linearEdge.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers//usr/include/stdlib.h ../headers/inc/check.h

loadGraph.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/string.h

loadPath.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/string.h

loadPreGraph.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers//usr/include/zlib.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/string.h

localAsm.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/stack.h ../headers/inc/darray.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/stdlib.h

main.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/stack.h ../headers/inc/darray.h ../headers//usr/include/stdint.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/kmerhash.h ../headers//usr/include/getopt.h ../headers/inc/global.h ../headers/inc/extfunc.h

map.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers//usr/include/getopt.h ../headers/inc/extvab.h ../headers/inc/extfunc.h

mem_manager.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers//usr/include/stdio.h ../headers/inc/def.h ../headers/inc/check.h ../headers//usr/include/stdlib.h

newhash.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h ../headers//usr/include/stdlib.h ../headers/inc/extfunc.h

node2edge.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/stack.h ../headers//usr/include/zlib.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers//usr/include/stdlib.h ../headers/inc/check.h

orderContig.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/stdlib.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers/inc/darray.h ../headers//usr/include/zlib.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/fibHeap.h ../headers/inc/check.h

output_contig.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/check.h ../headers/inc/extfunc.h ../headers//usr/include/stdlib.h

output_pregraph.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/types.h ../headers//usr/include/zlib.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h

output_scaffold.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/check.h

pregraph.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers//usr/include/getopt.h ../headers/inc/extvab.h ../headers/inc/extfunc.h

prlHashCtg.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers//usr/include/unistd.h ../headers/inc/extfunc.h ../headers//usr/include/pthread.h ../headers/inc/check.h

prlHashReads.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers/inc/def2.h ../headers/inc/types.h ../headers//usr/include/stdint.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers/inc/def.h ../headers//usr/include/x86_64-linux-gnu/bits/siginfo.h ../headers//usr/include/aio.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers//usr/include/unistd.h ../headers/inc/extfunc.h ../headers//usr/include/string.h ../headers//usr/include/pthread.h ../headers//usr/include/stdlib.h ../headers/inc/check.h ../headers//usr/include/x86_64-linux-gnu/bits/errno.h

prlRead2Ctg.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers/inc/def2.h ../headers/inc/types.h ../headers/inc/stack.h ../headers//usr/include/stdint.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers/inc/def.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers//usr/include/unistd.h ../headers/inc/extfunc.h ../headers//usr/include/pthread.h ../headers//usr/include/stdlib.h ../headers/inc/check.h

prlRead2path.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers/inc/def2.h ../headers/inc/types.h ../headers//usr/include/stdint.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers/inc/def.h ../headers//usr/include/x86_64-linux-gnu/bits/siginfo.h ../headers//usr/include/aio.h ../headers/inc/newhash.h ../headers/inc/extvab.h ../headers//usr/include/unistd.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/pthread.h ../headers//usr/include/stdlib.h ../headers/inc/extfunc2.h

prlReadFillGap.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers/inc/darray.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/check.h ../headers/inc/extfunc.h ../headers//usr/include/unistd.h ../headers//usr/include/pthread.h ../headers//usr/include/string.h

read2edge.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers/inc/def2.h ../headers/inc/types.h ../headers//usr/include/stdint.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers/inc/def.h ../headers/inc/kmerhash.h ../headers/inc/extvab.h ../headers//usr/include/unistd.h ../headers/inc/extfunc.h ../headers//usr/include/pthread.h ../headers//usr/include/stdlib.h ../headers/inc/check.h ../headers//usr/include/string.h

read2scaf.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/stack.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/stdlib.h

readInterval.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc2.h

readseq1by1.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers/inc/sam_view.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers/inc/def2.h ../headers//usr/include/stdint.h ../headers//usr/include/samtools/bgzf.h ../headers//usr/include/samtools/bam.h ../headers//usr/include/samtools/sam.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/check.h ../headers//usr/include/string.h ../headers/inc/extfunc.h

scaffold.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers/inc/def2.h ../headers//usr/include/getopt.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h

searchPath.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/stack.h ../headers/inc/def.h ../headers/inc/extvab.h

seq.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def.h ../headers/inc/check.h

splitReps.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/inc/def2.h ../headers/inc/def.h ../headers/inc/extvab.h ../headers/inc/extfunc.h ../headers/inc/check.h ../headers//usr/include/stdlib.h

stack.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers/inc/stack.h ../headers//usr/include/stdio.h ../headers//usr/include/stdlib.h