snap - amd64
Documentation
./doc/run-unit-test
./doc/changelog.Debian.gz
./doc/examples/DNA/thale.dna.gz
./doc/examples/DNA/worm.dna.gz
./doc/copyright
./doc/README.Debian
./doc/README.test
./doc/00README.gz
Binaries
hmm-info
compile units
hmm-info.c
Gimple
./hmm-info.c.004t.gimple
GKD
./hmm-info.o.gkd
OBJ
obj: ./hmm-info.o
zoeAlignment.c
Gimple
./zoeAlignment.c.004t.gimple
GKD
./zoeAlignment.o.gkd
OBJ
obj: ./zoeAlignment.o
zoeCDS.c
Gimple
./zoeCDS.c.004t.gimple
GKD
./zoeCDS.o.gkd
OBJ
obj: ./zoeCDS.o
zoeCounter.c
Gimple
./zoeCounter.c.004t.gimple
GKD
./zoeCounter.o.gkd
OBJ
obj: ./zoeCounter.o
zoeDNA.c
Gimple
./zoeDNA.c.004t.gimple
GKD
./zoeDNA.o.gkd
OBJ
obj: ./zoeDNA.o
zoeDistribution.c
Gimple
./zoeDistribution.c.004t.gimple
GKD
./zoeDistribution.o.gkd
OBJ
obj: ./zoeDistribution.o
zoeDuration.c
Gimple
./zoeDuration.c.004t.gimple
GKD
./zoeDuration.o.gkd
OBJ
obj: ./zoeDuration.o
zoeFastaFile.c
Gimple
./zoeFastaFile.c.004t.gimple
GKD
./zoeFastaFile.o.gkd
OBJ
obj: ./zoeFastaFile.o
zoeFeature.c
Gimple
./zoeFeature.c.004t.gimple
GKD
./zoeFeature.o.gkd
OBJ
obj: ./zoeFeature.o
zoeFeatureFactory.c
Gimple
./zoeFeatureFactory.c.004t.gimple
GKD
./zoeFeatureFactory.o.gkd
OBJ
obj: ./zoeFeatureFactory.o
zoeFeatureTable.c
Gimple
./zoeFeatureTable.c.004t.gimple
GKD
./zoeFeatureTable.o.gkd
OBJ
obj: ./zoeFeatureTable.o
zoeHMM.c
Gimple
./zoeHMM.c.004t.gimple
GKD
./zoeHMM.o.gkd
OBJ
obj: ./zoeHMM.o
zoeIsochore.c
Gimple
./zoeIsochore.c.004t.gimple
GKD
./zoeIsochore.o.gkd
OBJ
obj: ./zoeIsochore.o
zoeMath.c
Gimple
./zoeMath.c.004t.gimple
GKD
./zoeMath.o.gkd
OBJ
obj: ./zoeMath.o
zoeModel.c
Gimple
./zoeModel.c.004t.gimple
GKD
./zoeModel.o.gkd
OBJ
obj: ./zoeModel.o
zoePhasePref.c
Gimple
./zoePhasePref.c.004t.gimple
GKD
./zoePhasePref.o.gkd
OBJ
obj: ./zoePhasePref.o
zoeProtein.c
Gimple
./zoeProtein.c.004t.gimple
GKD
./zoeProtein.o.gkd
OBJ
obj: ./zoeProtein.o
zoeScanner.c
Gimple
./zoeScanner.c.004t.gimple
GKD
./zoeScanner.o.gkd
OBJ
obj: ./zoeScanner.o
zoeState.c
Gimple
./zoeState.c.004t.gimple
GKD
./zoeState.o.gkd
OBJ
obj: ./zoeState.o
zoeTools.c
Gimple
./zoeTools.c.004t.gimple
GKD
./zoeTools.o.gkd
OBJ
obj: ./zoeTools.o
zoeTransition.c
Gimple
./zoeTransition.c.004t.gimple
GKD
./zoeTransition.o.gkd
OBJ
obj: ./zoeTransition.o
zoeTrellis.c
Gimple
./zoeTrellis.c.004t.gimple
GKD
./zoeTrellis.o.gkd
OBJ
obj: ./zoeTrellis.o
includes
hmm-info.c
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers/Zoe/zoeTools.h
../headers/Zoe/zoeFeature.h
../headers/Zoe/zoeModel.h
../headers/Zoe/zoeDistribution.h
../headers/Zoe/zoeDuration.h
../headers/Zoe/zoeState.h
../headers/Zoe/zoePhasePref.h
../headers/Zoe/zoeTransition.h
../headers/Zoe/zoeHMM.h
../headers/Zoe/zoeMath.h
zoeAlignment.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdlib.h
./zoeTools.h
./zoeProtein.h
./zoeDNA.h
./zoeAlignment.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
zoeCDS.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeProtein.h
./zoeFeature.h
./zoeDNA.h
./zoeCDS.h
zoeCounter.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoeDNA.h
./zoeModel.h
./zoeCounter.h
../headers//usr/include/stdio.h
./zoeMath.h
zoeDNA.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFastaFile.h
./zoeProtein.h
../headers//usr/include/ctype.h
./zoeFeature.h
./zoeDNA.h
../headers//usr/include/string.h
zoeDistribution.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeDistribution.h
./zoeMath.h
zoeDuration.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeDistribution.h
./zoeFeature.h
./zoeDuration.h
zoeFastaFile.c
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFastaFile.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
zoeFeature.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
../headers//usr/include/string.h
zoeFeatureFactory.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoeDNA.h
./zoeModel.h
./zoeScanner.h
./zoeFeatureFactory.h
../headers//usr/include/stdio.h
zoeFeatureTable.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdlib.h
./zoeTools.h
./zoeProtein.h
./zoeFeature.h
./zoeDNA.h
./zoeCDS.h
./zoeFeatureTable.h
../headers//usr/include/string.h
zoeHMM.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeDistribution.h
./zoeFeature.h
./zoeDuration.h
./zoeState.h
./zoeModel.h
./zoePhasePref.h
./zoeTransition.h
./zoeHMM.h
./zoeMath.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
zoeIsochore.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeDistribution.h
./zoeFeature.h
./zoeDuration.h
./zoeState.h
./zoeModel.h
./zoePhasePref.h
./zoeTransition.h
./zoeHMM.h
./zoeIsochore.h
../headers//usr/include/stdlib.h
zoeMath.c
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
./zoeTools.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/string.h
zoeModel.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeModel.h
./zoeMath.h
../headers//usr/include/string.h
zoePhasePref.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoePhasePref.h
./zoeMath.h
zoeProtein.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFastaFile.h
./zoeProtein.h
../headers//usr/include/string.h
zoeScanner.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoeDNA.h
./zoeModel.h
./zoeScanner.h
./zoeMath.h
../headers//usr/include/stdlib.h
zoeState.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeFeature.h
./zoeState.h
./zoeTools.h
zoeTools.c
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/stdlib.h
zoeTransition.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoeTransition.h
./zoeMath.h
zoeTrellis.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeProtein.h
../headers//usr/include/ctype.h
./zoeFeature.h
./zoeDNA.h
./zoeCDS.h
./zoeModel.h
./zoeScanner.h
./zoeFeatureTable.h
./zoeFeatureFactory.h
./zoeDistribution.h
./zoeDuration.h
./zoeState.h
./zoePhasePref.h
./zoeTransition.h
./zoeHMM.h
./zoeTrellis.h
./zoeMath.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/hmm-info.1.gz
forge
compile units
forge.c
Gimple
./forge.c.004t.gimple
GKD
./forge.o.gkd
OBJ
obj: ./forge.o
zoeAlignment.c
Gimple
./zoeAlignment.c.004t.gimple
GKD
./zoeAlignment.o.gkd
OBJ
obj: ./zoeAlignment.o
zoeCDS.c
Gimple
./zoeCDS.c.004t.gimple
GKD
./zoeCDS.o.gkd
OBJ
obj: ./zoeCDS.o
zoeCounter.c
Gimple
./zoeCounter.c.004t.gimple
GKD
./zoeCounter.o.gkd
OBJ
obj: ./zoeCounter.o
zoeDNA.c
Gimple
./zoeDNA.c.004t.gimple
GKD
./zoeDNA.o.gkd
OBJ
obj: ./zoeDNA.o
zoeDistribution.c
Gimple
./zoeDistribution.c.004t.gimple
GKD
./zoeDistribution.o.gkd
OBJ
obj: ./zoeDistribution.o
zoeDuration.c
Gimple
./zoeDuration.c.004t.gimple
GKD
./zoeDuration.o.gkd
OBJ
obj: ./zoeDuration.o
zoeFastaFile.c
Gimple
./zoeFastaFile.c.004t.gimple
GKD
./zoeFastaFile.o.gkd
OBJ
obj: ./zoeFastaFile.o
zoeFeature.c
Gimple
./zoeFeature.c.004t.gimple
GKD
./zoeFeature.o.gkd
OBJ
obj: ./zoeFeature.o
zoeFeatureFactory.c
Gimple
./zoeFeatureFactory.c.004t.gimple
GKD
./zoeFeatureFactory.o.gkd
OBJ
obj: ./zoeFeatureFactory.o
zoeFeatureTable.c
Gimple
./zoeFeatureTable.c.004t.gimple
GKD
./zoeFeatureTable.o.gkd
OBJ
obj: ./zoeFeatureTable.o
zoeHMM.c
Gimple
./zoeHMM.c.004t.gimple
GKD
./zoeHMM.o.gkd
OBJ
obj: ./zoeHMM.o
zoeIsochore.c
Gimple
./zoeIsochore.c.004t.gimple
GKD
./zoeIsochore.o.gkd
OBJ
obj: ./zoeIsochore.o
zoeMath.c
Gimple
./zoeMath.c.004t.gimple
GKD
./zoeMath.o.gkd
OBJ
obj: ./zoeMath.o
zoeModel.c
Gimple
./zoeModel.c.004t.gimple
GKD
./zoeModel.o.gkd
OBJ
obj: ./zoeModel.o
zoePhasePref.c
Gimple
./zoePhasePref.c.004t.gimple
GKD
./zoePhasePref.o.gkd
OBJ
obj: ./zoePhasePref.o
zoeProtein.c
Gimple
./zoeProtein.c.004t.gimple
GKD
./zoeProtein.o.gkd
OBJ
obj: ./zoeProtein.o
zoeScanner.c
Gimple
./zoeScanner.c.004t.gimple
GKD
./zoeScanner.o.gkd
OBJ
obj: ./zoeScanner.o
zoeState.c
Gimple
./zoeState.c.004t.gimple
GKD
./zoeState.o.gkd
OBJ
obj: ./zoeState.o
zoeTools.c
Gimple
./zoeTools.c.004t.gimple
GKD
./zoeTools.o.gkd
OBJ
obj: ./zoeTools.o
zoeTransition.c
Gimple
./zoeTransition.c.004t.gimple
GKD
./zoeTransition.o.gkd
OBJ
obj: ./zoeTransition.o
zoeTrellis.c
Gimple
./zoeTrellis.c.004t.gimple
GKD
./zoeTrellis.o.gkd
OBJ
obj: ./zoeTrellis.o
includes
forge.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers/Zoe/zoeTools.h
../headers/Zoe/zoeFastaFile.h
../headers/Zoe/zoeProtein.h
../headers/Zoe/zoeFeature.h
../headers/Zoe/zoeDNA.h
../headers/Zoe/zoeCDS.h
../headers/Zoe/zoeModel.h
../headers/Zoe/zoeCounter.h
../headers/Zoe/zoeFeatureTable.h
../headers/Zoe/zoeMath.h
zoeAlignment.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdlib.h
./zoeTools.h
./zoeProtein.h
./zoeDNA.h
./zoeAlignment.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
zoeCDS.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeProtein.h
./zoeFeature.h
./zoeDNA.h
./zoeCDS.h
zoeCounter.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoeDNA.h
./zoeModel.h
./zoeCounter.h
../headers//usr/include/stdio.h
./zoeMath.h
zoeDNA.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFastaFile.h
./zoeProtein.h
../headers//usr/include/ctype.h
./zoeFeature.h
./zoeDNA.h
../headers//usr/include/string.h
zoeDistribution.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeDistribution.h
./zoeMath.h
zoeDuration.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeDistribution.h
./zoeFeature.h
./zoeDuration.h
zoeFastaFile.c
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFastaFile.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
zoeFeature.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
../headers//usr/include/string.h
zoeFeatureFactory.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoeDNA.h
./zoeModel.h
./zoeScanner.h
./zoeFeatureFactory.h
../headers//usr/include/stdio.h
zoeFeatureTable.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdlib.h
./zoeTools.h
./zoeProtein.h
./zoeFeature.h
./zoeDNA.h
./zoeCDS.h
./zoeFeatureTable.h
../headers//usr/include/string.h
zoeHMM.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeDistribution.h
./zoeFeature.h
./zoeDuration.h
./zoeState.h
./zoeModel.h
./zoePhasePref.h
./zoeTransition.h
./zoeHMM.h
./zoeMath.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
zoeIsochore.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeDistribution.h
./zoeFeature.h
./zoeDuration.h
./zoeState.h
./zoeModel.h
./zoePhasePref.h
./zoeTransition.h
./zoeHMM.h
./zoeIsochore.h
../headers//usr/include/stdlib.h
zoeMath.c
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
./zoeTools.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/string.h
zoeModel.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeModel.h
./zoeMath.h
../headers//usr/include/string.h
zoePhasePref.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoePhasePref.h
./zoeMath.h
zoeProtein.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFastaFile.h
./zoeProtein.h
../headers//usr/include/string.h
zoeScanner.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoeDNA.h
./zoeModel.h
./zoeScanner.h
./zoeMath.h
../headers//usr/include/stdlib.h
zoeState.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeFeature.h
./zoeState.h
./zoeTools.h
zoeTools.c
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/stdlib.h
zoeTransition.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoeTransition.h
./zoeMath.h
zoeTrellis.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeProtein.h
../headers//usr/include/ctype.h
./zoeFeature.h
./zoeDNA.h
./zoeCDS.h
./zoeModel.h
./zoeScanner.h
./zoeFeatureTable.h
./zoeFeatureFactory.h
./zoeDistribution.h
./zoeDuration.h
./zoeState.h
./zoePhasePref.h
./zoeTransition.h
./zoeHMM.h
./zoeTrellis.h
./zoeMath.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/forge.1.gz
fathom
compile units
fathom.c
Gimple
./fathom.c.004t.gimple
GKD
./fathom.o.gkd
OBJ
obj: ./fathom.o
zoeAlignment.c
Gimple
./zoeAlignment.c.004t.gimple
GKD
./zoeAlignment.o.gkd
OBJ
obj: ./zoeAlignment.o
zoeCDS.c
Gimple
./zoeCDS.c.004t.gimple
GKD
./zoeCDS.o.gkd
OBJ
obj: ./zoeCDS.o
zoeCounter.c
Gimple
./zoeCounter.c.004t.gimple
GKD
./zoeCounter.o.gkd
OBJ
obj: ./zoeCounter.o
zoeDNA.c
Gimple
./zoeDNA.c.004t.gimple
GKD
./zoeDNA.o.gkd
OBJ
obj: ./zoeDNA.o
zoeDistribution.c
Gimple
./zoeDistribution.c.004t.gimple
GKD
./zoeDistribution.o.gkd
OBJ
obj: ./zoeDistribution.o
zoeDuration.c
Gimple
./zoeDuration.c.004t.gimple
GKD
./zoeDuration.o.gkd
OBJ
obj: ./zoeDuration.o
zoeFastaFile.c
Gimple
./zoeFastaFile.c.004t.gimple
GKD
./zoeFastaFile.o.gkd
OBJ
obj: ./zoeFastaFile.o
zoeFeature.c
Gimple
./zoeFeature.c.004t.gimple
GKD
./zoeFeature.o.gkd
OBJ
obj: ./zoeFeature.o
zoeFeatureFactory.c
Gimple
./zoeFeatureFactory.c.004t.gimple
GKD
./zoeFeatureFactory.o.gkd
OBJ
obj: ./zoeFeatureFactory.o
zoeFeatureTable.c
Gimple
./zoeFeatureTable.c.004t.gimple
GKD
./zoeFeatureTable.o.gkd
OBJ
obj: ./zoeFeatureTable.o
zoeHMM.c
Gimple
./zoeHMM.c.004t.gimple
GKD
./zoeHMM.o.gkd
OBJ
obj: ./zoeHMM.o
zoeIsochore.c
Gimple
./zoeIsochore.c.004t.gimple
GKD
./zoeIsochore.o.gkd
OBJ
obj: ./zoeIsochore.o
zoeMath.c
Gimple
./zoeMath.c.004t.gimple
GKD
./zoeMath.o.gkd
OBJ
obj: ./zoeMath.o
zoeModel.c
Gimple
./zoeModel.c.004t.gimple
GKD
./zoeModel.o.gkd
OBJ
obj: ./zoeModel.o
zoePhasePref.c
Gimple
./zoePhasePref.c.004t.gimple
GKD
./zoePhasePref.o.gkd
OBJ
obj: ./zoePhasePref.o
zoeProtein.c
Gimple
./zoeProtein.c.004t.gimple
GKD
./zoeProtein.o.gkd
OBJ
obj: ./zoeProtein.o
zoeScanner.c
Gimple
./zoeScanner.c.004t.gimple
GKD
./zoeScanner.o.gkd
OBJ
obj: ./zoeScanner.o
zoeState.c
Gimple
./zoeState.c.004t.gimple
GKD
./zoeState.o.gkd
OBJ
obj: ./zoeState.o
zoeTools.c
Gimple
./zoeTools.c.004t.gimple
GKD
./zoeTools.o.gkd
OBJ
obj: ./zoeTools.o
zoeTransition.c
Gimple
./zoeTransition.c.004t.gimple
GKD
./zoeTransition.o.gkd
OBJ
obj: ./zoeTransition.o
zoeTrellis.c
Gimple
./zoeTrellis.c.004t.gimple
GKD
./zoeTrellis.o.gkd
OBJ
obj: ./zoeTrellis.o
includes
fathom.c
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers/Zoe/zoeTools.h
../headers/Zoe/zoeFastaFile.h
../headers/Zoe/zoeProtein.h
../headers/Zoe/zoeFeature.h
../headers/Zoe/zoeDNA.h
../headers/Zoe/zoeCDS.h
../headers/Zoe/zoeModel.h
../headers/Zoe/zoeDistribution.h
../headers/Zoe/zoeDuration.h
../headers/Zoe/zoeScanner.h
../headers/Zoe/zoeFeatureTable.h
../headers/Zoe/zoeFeatureFactory.h
../headers/Zoe/zoeState.h
../headers/Zoe/zoePhasePref.h
../headers/Zoe/zoeTransition.h
../headers/Zoe/zoeHMM.h
../headers/Zoe/zoeTrellis.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
zoeAlignment.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdlib.h
./zoeTools.h
./zoeProtein.h
./zoeDNA.h
./zoeAlignment.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
zoeCDS.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeProtein.h
./zoeFeature.h
./zoeDNA.h
./zoeCDS.h
zoeCounter.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoeDNA.h
./zoeModel.h
./zoeCounter.h
../headers//usr/include/stdio.h
./zoeMath.h
zoeDNA.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFastaFile.h
./zoeProtein.h
../headers//usr/include/ctype.h
./zoeFeature.h
./zoeDNA.h
../headers//usr/include/string.h
zoeDistribution.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeDistribution.h
./zoeMath.h
zoeDuration.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeDistribution.h
./zoeFeature.h
./zoeDuration.h
zoeFastaFile.c
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFastaFile.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
zoeFeature.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
../headers//usr/include/string.h
zoeFeatureFactory.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoeDNA.h
./zoeModel.h
./zoeScanner.h
./zoeFeatureFactory.h
../headers//usr/include/stdio.h
zoeFeatureTable.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdlib.h
./zoeTools.h
./zoeProtein.h
./zoeFeature.h
./zoeDNA.h
./zoeCDS.h
./zoeFeatureTable.h
../headers//usr/include/string.h
zoeHMM.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeDistribution.h
./zoeFeature.h
./zoeDuration.h
./zoeState.h
./zoeModel.h
./zoePhasePref.h
./zoeTransition.h
./zoeHMM.h
./zoeMath.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
zoeIsochore.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeDistribution.h
./zoeFeature.h
./zoeDuration.h
./zoeState.h
./zoeModel.h
./zoePhasePref.h
./zoeTransition.h
./zoeHMM.h
./zoeIsochore.h
../headers//usr/include/stdlib.h
zoeMath.c
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
./zoeTools.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/string.h
zoeModel.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeModel.h
./zoeMath.h
../headers//usr/include/string.h
zoePhasePref.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoePhasePref.h
./zoeMath.h
zoeProtein.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFastaFile.h
./zoeProtein.h
../headers//usr/include/string.h
zoeScanner.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoeDNA.h
./zoeModel.h
./zoeScanner.h
./zoeMath.h
../headers//usr/include/stdlib.h
zoeState.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeFeature.h
./zoeState.h
./zoeTools.h
zoeTools.c
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/stdlib.h
zoeTransition.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoeTransition.h
./zoeMath.h
zoeTrellis.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeProtein.h
../headers//usr/include/ctype.h
./zoeFeature.h
./zoeDNA.h
./zoeCDS.h
./zoeModel.h
./zoeScanner.h
./zoeFeatureTable.h
./zoeFeatureFactory.h
./zoeDistribution.h
./zoeDuration.h
./zoeState.h
./zoePhasePref.h
./zoeTransition.h
./zoeHMM.h
./zoeTrellis.h
./zoeMath.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/fathom.1.gz
snap
compile units
snap.c
Gimple
./snap.c.004t.gimple
GKD
./snap.o.gkd
OBJ
obj: ./snap.o
zoeAlignment.c
Gimple
./zoeAlignment.c.004t.gimple
GKD
./zoeAlignment.o.gkd
OBJ
obj: ./zoeAlignment.o
zoeCDS.c
Gimple
./zoeCDS.c.004t.gimple
GKD
./zoeCDS.o.gkd
OBJ
obj: ./zoeCDS.o
zoeCounter.c
Gimple
./zoeCounter.c.004t.gimple
GKD
./zoeCounter.o.gkd
OBJ
obj: ./zoeCounter.o
zoeDNA.c
Gimple
./zoeDNA.c.004t.gimple
GKD
./zoeDNA.o.gkd
OBJ
obj: ./zoeDNA.o
zoeDistribution.c
Gimple
./zoeDistribution.c.004t.gimple
GKD
./zoeDistribution.o.gkd
OBJ
obj: ./zoeDistribution.o
zoeDuration.c
Gimple
./zoeDuration.c.004t.gimple
GKD
./zoeDuration.o.gkd
OBJ
obj: ./zoeDuration.o
zoeFastaFile.c
Gimple
./zoeFastaFile.c.004t.gimple
GKD
./zoeFastaFile.o.gkd
OBJ
obj: ./zoeFastaFile.o
zoeFeature.c
Gimple
./zoeFeature.c.004t.gimple
GKD
./zoeFeature.o.gkd
OBJ
obj: ./zoeFeature.o
zoeFeatureFactory.c
Gimple
./zoeFeatureFactory.c.004t.gimple
GKD
./zoeFeatureFactory.o.gkd
OBJ
obj: ./zoeFeatureFactory.o
zoeFeatureTable.c
Gimple
./zoeFeatureTable.c.004t.gimple
GKD
./zoeFeatureTable.o.gkd
OBJ
obj: ./zoeFeatureTable.o
zoeHMM.c
Gimple
./zoeHMM.c.004t.gimple
GKD
./zoeHMM.o.gkd
OBJ
obj: ./zoeHMM.o
zoeIsochore.c
Gimple
./zoeIsochore.c.004t.gimple
GKD
./zoeIsochore.o.gkd
OBJ
obj: ./zoeIsochore.o
zoeMath.c
Gimple
./zoeMath.c.004t.gimple
GKD
./zoeMath.o.gkd
OBJ
obj: ./zoeMath.o
zoeModel.c
Gimple
./zoeModel.c.004t.gimple
GKD
./zoeModel.o.gkd
OBJ
obj: ./zoeModel.o
zoePhasePref.c
Gimple
./zoePhasePref.c.004t.gimple
GKD
./zoePhasePref.o.gkd
OBJ
obj: ./zoePhasePref.o
zoeProtein.c
Gimple
./zoeProtein.c.004t.gimple
GKD
./zoeProtein.o.gkd
OBJ
obj: ./zoeProtein.o
zoeScanner.c
Gimple
./zoeScanner.c.004t.gimple
GKD
./zoeScanner.o.gkd
OBJ
obj: ./zoeScanner.o
zoeState.c
Gimple
./zoeState.c.004t.gimple
GKD
./zoeState.o.gkd
OBJ
obj: ./zoeState.o
zoeTools.c
Gimple
./zoeTools.c.004t.gimple
GKD
./zoeTools.o.gkd
OBJ
obj: ./zoeTools.o
zoeTransition.c
Gimple
./zoeTransition.c.004t.gimple
GKD
./zoeTransition.o.gkd
OBJ
obj: ./zoeTransition.o
zoeTrellis.c
Gimple
./zoeTrellis.c.004t.gimple
GKD
./zoeTrellis.o.gkd
OBJ
obj: ./zoeTrellis.o
includes
snap.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers/Zoe/zoeTools.h
../headers/Zoe/zoeFastaFile.h
../headers/Zoe/zoeProtein.h
../headers//usr/include/ctype.h
../headers/Zoe/zoeFeature.h
../headers/Zoe/zoeDNA.h
../headers/Zoe/zoeCDS.h
../headers/Zoe/zoeModel.h
../headers/Zoe/zoeDistribution.h
../headers/Zoe/zoeDuration.h
../headers/Zoe/zoeScanner.h
../headers/Zoe/zoeFeatureTable.h
../headers/Zoe/zoeFeatureFactory.h
../headers/Zoe/zoeState.h
../headers/Zoe/zoePhasePref.h
../headers/Zoe/zoeTransition.h
../headers/Zoe/zoeHMM.h
../headers/Zoe/zoeIsochore.h
../headers/Zoe/zoeTrellis.h
../headers//usr/include/string.h
zoeAlignment.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdlib.h
./zoeTools.h
./zoeProtein.h
./zoeDNA.h
./zoeAlignment.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
zoeCDS.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeProtein.h
./zoeFeature.h
./zoeDNA.h
./zoeCDS.h
zoeCounter.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoeDNA.h
./zoeModel.h
./zoeCounter.h
../headers//usr/include/stdio.h
./zoeMath.h
zoeDNA.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFastaFile.h
./zoeProtein.h
../headers//usr/include/ctype.h
./zoeFeature.h
./zoeDNA.h
../headers//usr/include/string.h
zoeDistribution.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeDistribution.h
./zoeMath.h
zoeDuration.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeDistribution.h
./zoeFeature.h
./zoeDuration.h
zoeFastaFile.c
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFastaFile.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
zoeFeature.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
../headers//usr/include/string.h
zoeFeatureFactory.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoeDNA.h
./zoeModel.h
./zoeScanner.h
./zoeFeatureFactory.h
../headers//usr/include/stdio.h
zoeFeatureTable.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdlib.h
./zoeTools.h
./zoeProtein.h
./zoeFeature.h
./zoeDNA.h
./zoeCDS.h
./zoeFeatureTable.h
../headers//usr/include/string.h
zoeHMM.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeDistribution.h
./zoeFeature.h
./zoeDuration.h
./zoeState.h
./zoeModel.h
./zoePhasePref.h
./zoeTransition.h
./zoeHMM.h
./zoeMath.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
zoeIsochore.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeDistribution.h
./zoeFeature.h
./zoeDuration.h
./zoeState.h
./zoeModel.h
./zoePhasePref.h
./zoeTransition.h
./zoeHMM.h
./zoeIsochore.h
../headers//usr/include/stdlib.h
zoeMath.c
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
./zoeTools.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/string.h
zoeModel.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeModel.h
./zoeMath.h
../headers//usr/include/string.h
zoePhasePref.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoePhasePref.h
./zoeMath.h
zoeProtein.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFastaFile.h
./zoeProtein.h
../headers//usr/include/string.h
zoeScanner.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoeDNA.h
./zoeModel.h
./zoeScanner.h
./zoeMath.h
../headers//usr/include/stdlib.h
zoeState.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeFeature.h
./zoeState.h
./zoeTools.h
zoeTools.c
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/stdlib.h
zoeTransition.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoeTransition.h
./zoeMath.h
zoeTrellis.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeProtein.h
../headers//usr/include/ctype.h
./zoeFeature.h
./zoeDNA.h
./zoeCDS.h
./zoeModel.h
./zoeScanner.h
./zoeFeatureTable.h
./zoeFeatureFactory.h
./zoeDistribution.h
./zoeDuration.h
./zoeState.h
./zoePhasePref.h
./zoeTransition.h
./zoeHMM.h
./zoeTrellis.h
./zoeMath.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/snap.1.gz
zoe-loop
compile units
zoe-loop.c
Gimple
./zoe-loop.c.004t.gimple
GKD
./zoe-loop.o.gkd
OBJ
obj: ./zoe-loop.o
zoeAlignment.c
Gimple
./zoeAlignment.c.004t.gimple
GKD
./zoeAlignment.o.gkd
OBJ
obj: ./zoeAlignment.o
zoeCDS.c
Gimple
./zoeCDS.c.004t.gimple
GKD
./zoeCDS.o.gkd
OBJ
obj: ./zoeCDS.o
zoeCounter.c
Gimple
./zoeCounter.c.004t.gimple
GKD
./zoeCounter.o.gkd
OBJ
obj: ./zoeCounter.o
zoeDNA.c
Gimple
./zoeDNA.c.004t.gimple
GKD
./zoeDNA.o.gkd
OBJ
obj: ./zoeDNA.o
zoeDistribution.c
Gimple
./zoeDistribution.c.004t.gimple
GKD
./zoeDistribution.o.gkd
OBJ
obj: ./zoeDistribution.o
zoeDuration.c
Gimple
./zoeDuration.c.004t.gimple
GKD
./zoeDuration.o.gkd
OBJ
obj: ./zoeDuration.o
zoeFastaFile.c
Gimple
./zoeFastaFile.c.004t.gimple
GKD
./zoeFastaFile.o.gkd
OBJ
obj: ./zoeFastaFile.o
zoeFeature.c
Gimple
./zoeFeature.c.004t.gimple
GKD
./zoeFeature.o.gkd
OBJ
obj: ./zoeFeature.o
zoeFeatureFactory.c
Gimple
./zoeFeatureFactory.c.004t.gimple
GKD
./zoeFeatureFactory.o.gkd
OBJ
obj: ./zoeFeatureFactory.o
zoeFeatureTable.c
Gimple
./zoeFeatureTable.c.004t.gimple
GKD
./zoeFeatureTable.o.gkd
OBJ
obj: ./zoeFeatureTable.o
zoeHMM.c
Gimple
./zoeHMM.c.004t.gimple
GKD
./zoeHMM.o.gkd
OBJ
obj: ./zoeHMM.o
zoeIsochore.c
Gimple
./zoeIsochore.c.004t.gimple
GKD
./zoeIsochore.o.gkd
OBJ
obj: ./zoeIsochore.o
zoeMath.c
Gimple
./zoeMath.c.004t.gimple
GKD
./zoeMath.o.gkd
OBJ
obj: ./zoeMath.o
zoeModel.c
Gimple
./zoeModel.c.004t.gimple
GKD
./zoeModel.o.gkd
OBJ
obj: ./zoeModel.o
zoePhasePref.c
Gimple
./zoePhasePref.c.004t.gimple
GKD
./zoePhasePref.o.gkd
OBJ
obj: ./zoePhasePref.o
zoeProtein.c
Gimple
./zoeProtein.c.004t.gimple
GKD
./zoeProtein.o.gkd
OBJ
obj: ./zoeProtein.o
zoeScanner.c
Gimple
./zoeScanner.c.004t.gimple
GKD
./zoeScanner.o.gkd
OBJ
obj: ./zoeScanner.o
zoeState.c
Gimple
./zoeState.c.004t.gimple
GKD
./zoeState.o.gkd
OBJ
obj: ./zoeState.o
zoeTools.c
Gimple
./zoeTools.c.004t.gimple
GKD
./zoeTools.o.gkd
OBJ
obj: ./zoeTools.o
zoeTransition.c
Gimple
./zoeTransition.c.004t.gimple
GKD
./zoeTransition.o.gkd
OBJ
obj: ./zoeTransition.o
zoeTrellis.c
Gimple
./zoeTrellis.c.004t.gimple
GKD
./zoeTrellis.o.gkd
OBJ
obj: ./zoeTrellis.o
includes
zoe-loop.c
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFastaFile.h
./zoeProtein.h
./zoeFeature.h
./zoeDNA.h
./zoeAlignment.h
./zoeCDS.h
./zoeModel.h
./zoeCounter.h
./zoeDistribution.h
./zoeDuration.h
./zoeScanner.h
./zoeFeatureTable.h
./zoeState.h
./zoeTransition.h
zoeAlignment.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdlib.h
./zoeTools.h
./zoeProtein.h
./zoeDNA.h
./zoeAlignment.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
zoeCDS.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeProtein.h
./zoeFeature.h
./zoeDNA.h
./zoeCDS.h
zoeCounter.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoeDNA.h
./zoeModel.h
./zoeCounter.h
../headers//usr/include/stdio.h
./zoeMath.h
zoeDNA.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFastaFile.h
./zoeProtein.h
../headers//usr/include/ctype.h
./zoeFeature.h
./zoeDNA.h
../headers//usr/include/string.h
zoeDistribution.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeDistribution.h
./zoeMath.h
zoeDuration.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeDistribution.h
./zoeFeature.h
./zoeDuration.h
zoeFastaFile.c
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFastaFile.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
zoeFeature.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
../headers//usr/include/string.h
zoeFeatureFactory.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoeDNA.h
./zoeModel.h
./zoeScanner.h
./zoeFeatureFactory.h
../headers//usr/include/stdio.h
zoeFeatureTable.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdlib.h
./zoeTools.h
./zoeProtein.h
./zoeFeature.h
./zoeDNA.h
./zoeCDS.h
./zoeFeatureTable.h
../headers//usr/include/string.h
zoeHMM.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeDistribution.h
./zoeFeature.h
./zoeDuration.h
./zoeState.h
./zoeModel.h
./zoePhasePref.h
./zoeTransition.h
./zoeHMM.h
./zoeMath.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
zoeIsochore.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeDistribution.h
./zoeFeature.h
./zoeDuration.h
./zoeState.h
./zoeModel.h
./zoePhasePref.h
./zoeTransition.h
./zoeHMM.h
./zoeIsochore.h
../headers//usr/include/stdlib.h
zoeMath.c
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
./zoeTools.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/string.h
zoeModel.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeModel.h
./zoeMath.h
../headers//usr/include/string.h
zoePhasePref.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoePhasePref.h
./zoeMath.h
zoeProtein.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFastaFile.h
./zoeProtein.h
../headers//usr/include/string.h
zoeScanner.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoeDNA.h
./zoeModel.h
./zoeScanner.h
./zoeMath.h
../headers//usr/include/stdlib.h
zoeState.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeFeature.h
./zoeState.h
./zoeTools.h
zoeTools.c
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/stdlib.h
zoeTransition.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeFeature.h
./zoeTransition.h
./zoeMath.h
zoeTrellis.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./zoeTools.h
./zoeProtein.h
../headers//usr/include/ctype.h
./zoeFeature.h
./zoeDNA.h
./zoeCDS.h
./zoeModel.h
./zoeScanner.h
./zoeFeatureTable.h
./zoeFeatureFactory.h
./zoeDistribution.h
./zoeDuration.h
./zoeState.h
./zoePhasePref.h
./zoeTransition.h
./zoeHMM.h
./zoeTrellis.h
./zoeMath.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/zoe-loop.1.gz
exonpairs
compile units
exonpairs.c
Gimple
./exonpairs.c.004t.gimple
GKD
./exonpairs.o.gkd
OBJ
obj: ./exonpairs.o
zoeAlignment.c
Gimple
./zoeAlignment.c.004t.gimple
GKD
./zoeAlignment.o.gkd
OBJ
obj: ./zoeAlignment.o
zoeCDS.c
Gimple
./zoeCDS.c.004t.gimple
GKD
./zoeCDS.o.gkd
OBJ
obj: ./zoeCDS.o
zoeCounter.c
Gimple
./zoeCounter.c.004t.gimple
GKD
./zoeCounter.o.gkd
OBJ
obj: ./zoeCounter.o
zoeDNA.c
Gimple
./zoeDNA.c.004t.gimple
GKD
./zoeDNA.o.gkd
OBJ
obj: ./zoeDNA.o
zoeDistribution.c
Gimple
./zoeDistribution.c.004t.gimple
GKD
./zoeDistribution.o.gkd
OBJ
obj: ./zoeDistribution.o
zoeDuration.c
Gimple
./zoeDuration.c.004t.gimple
GKD
./zoeDuration.o.gkd
OBJ
obj: ./zoeDuration.o
zoeFastaFile.c
Gimple
./zoeFastaFile.c.004t.gimple
GKD
./zoeFastaFile.o.gkd
OBJ
obj: ./zoeFastaFile.o
zoeFeature.c
Gimple
./zoeFeature.c.004t.gimple
GKD
./zoeFeature.o.gkd
OBJ
obj: ./zoeFeature.o
zoeFeatureFactory.c
Gimple
./zoeFeatureFactory.c.004t.gimple
GKD
./zoeFeatureFactory.o.gkd
OBJ
obj: ./zoeFeatureFactory.o
zoeFeatureTable.c
Gimple
./zoeFeatureTable.c.004t.gimple
GKD
./zoeFeatureTable.o.gkd
OBJ
obj: ./zoeFeatureTable.o
zoeHMM.c
Gimple
./zoeHMM.c.004t.gimple
GKD
./zoeHMM.o.gkd
OBJ
obj: ./zoeHMM.o
zoeIsochore.c
Gimple
./zoeIsochore.c.004t.gimple
GKD
./zoeIsochore.o.gkd
OBJ
obj: ./zoeIsochore.o
zoeMath.c
Gimple
./zoeMath.c.004t.gimple
GKD
./zoeMath.o.gkd
OBJ
obj: ./zoeMath.o
zoeModel.c
Gimple
./zoeModel.c.004t.gimple
GKD
./zoeModel.o.gkd
OBJ
obj: ./zoeModel.o
zoePhasePref.c
Gimple
./zoePhasePref.c.004t.gimple
GKD
./zoePhasePref.o.gkd
OBJ
obj: ./zoePhasePref.o
zoeProtein.c
Gimple
./zoeProtein.c.004t.gimple
GKD
./zoeProtein.o.gkd
OBJ
obj: ./zoeProtein.o
zoeScanner.c
Gimple
./zoeScanner.c.004t.gimple
GKD
./zoeScanner.o.gkd
OBJ
obj: ./zoeScanner.o
zoeState.c
Gimple
./zoeState.c.004t.gimple
GKD
./zoeState.o.gkd
OBJ
obj: ./zoeState.o
zoeTools.c
Gimple
./zoeTools.c.004t.gimple
GKD
./zoeTools.o.gkd
OBJ
obj: ./zoeTools.o
zoeTransition.c
Gimple
./zoeTransition.c.004t.gimple
GKD
./zoeTransition.o.gkd
OBJ
obj: ./zoeTransition.o
zoeTrellis.c
Gimple
./zoeTrellis.c.004t.gimple
GKD
./zoeTrellis.o.gkd
OBJ
obj: ./zoeTrellis.o
includes
exonpairs.c
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zoeAlignment.c
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zoeCDS.c
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zoeFeature.c
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zoeFeatureFactory.c
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zoeModel.c
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zoeProtein.c
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zoeScanner.c
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zoeState.c
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zoeTools.c
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zoeTransition.c
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./zoeTools.h
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zoeTrellis.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
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libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/exonpairs.1.gz