samtools - amd64
Documentation
./doc/NEWS.gz
./doc/AUTHORS
./doc/changelog.Debian.gz
./doc/examples/ex1.bam
./doc/examples/toy.fa
./doc/examples/toy.sam
./doc/examples/ex1.sam.gz
./doc/examples/00README.txt
./doc/examples/ex1.fa
./doc/copyright
./doc/README.Debian
./doc/README.bcftools
./doc/reference
./doc/changelog.gz
Binaries
razip
compile units
razip.c
Gimple
./razip.c.004t.gimple
GKD
./razip.o.gkd
OBJ
obj: ./razip.o
razf.c
Gimple
./razf.c.004t.gimple
GKD
./razf.o.gkd
OBJ
obj: ./razf.o
knetfile.c
Gimple
./knetfile.c.004t.gimple
GKD
./knetfile.o.gkd
OBJ
obj: ./knetfile.o
includes
razip.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
./knetfile.h
./razf.h
../headers//usr/include/getopt.h
../headers//usr/include/unistd.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
razf.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/fcntl.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
./knetfile.h
./razf.h
../headers//usr/include/unistd.h
../headers//usr/include/stdlib.h
knetfile.c
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/time.h
../headers//usr/include/x86_64-linux-gnu/sys/select.h
../headers//usr/include/unistd.h
../headers//usr/include/x86_64-linux-gnu/bits/sockaddr.h
../headers//usr/include/x86_64-linux-gnu/bits/socket.h
../headers//usr/include/netdb.h
./knetfile.h
../headers//usr/include/x86_64-linux-gnu/bits/select2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/sys/socket.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/x86_64-linux-gnu/bits/socket_type.h
libraries
../libs/lib/x86_64-linux-gnu/libz.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/razip.1.gz
maq2sam-long
compile units
maq2sam.c
Gimple
./maq2sam.c.004t.gimple
GKD
./maq2sam.o.gkd
OBJ
obj: ./maq2sam.o
includes
maq2sam.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers//usr/include/stdlib.h
../headers//usr/include/assert.h
libraries
../libs/lib/x86_64-linux-gnu/libz.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
bcftools
compile units
unassigned
call1.c
Gimple
./call1.c.004t.gimple
GKD
./call1.o.gkd
OBJ
obj: ./call1.o
main.c
Gimple
./main.c.004t.gimple
GKD
./main.o.gkd
OBJ
obj: ./main.o
kstring.c
Gimple
./kstring.c.004t.gimple
GKD
./kstring.o.gkd
OBJ
obj: ./kstring.o
bgzf.c
Gimple
./bgzf.c.004t.gimple
GKD
./bgzf.o.gkd
OBJ
obj: ./bgzf.o
knetfile.c
Gimple
./knetfile.c.004t.gimple
GKD
./knetfile.o.gkd
OBJ
obj: ./knetfile.o
bedidx.c
Gimple
./bedidx.c.004t.gimple
GKD
./bedidx.o.gkd
OBJ
obj: ./bedidx.o
bcf.c
Gimple
./bcf.c.004t.gimple
GKD
./bcf.o.gkd
OBJ
obj: ./bcf.o
vcf.c
Gimple
./vcf.c.004t.gimple
GKD
./vcf.o.gkd
OBJ
obj: ./vcf.o
bcfutils.c
Gimple
./bcfutils.c.004t.gimple
GKD
./bcfutils.o.gkd
OBJ
obj: ./bcfutils.o
prob1.c
Gimple
./prob1.c.004t.gimple
GKD
./prob1.o.gkd
OBJ
obj: ./prob1.o
em.c
Gimple
./em.c.004t.gimple
GKD
./em.o.gkd
OBJ
obj: ./em.o
kfunc.c
Gimple
./kfunc.c.004t.gimple
GKD
./kfunc.o.gkd
OBJ
obj: ./kfunc.o
kmin.c
Gimple
./kmin.c.004t.gimple
GKD
./kmin.o.gkd
OBJ
obj: ./kmin.o
index.c
Gimple
./index.c.004t.gimple
GKD
./index.o.gkd
OBJ
obj: ./index.o
fet.c
Gimple
./fet.c.004t.gimple
GKD
./fet.o.gkd
OBJ
obj: ./fet.o
mut.c
Gimple
./mut.c.004t.gimple
GKD
./mut.o.gkd
OBJ
obj: ./mut.o
bcf2qcall.c
Gimple
./bcf2qcall.c.004t.gimple
GKD
./bcf2qcall.o.gkd
OBJ
obj: ./bcf2qcall.o
includes
unassigned
../headers/../kstring.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
call1.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/unistd.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers//usr/include/stdint.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers/../bgzf.h
./bcf.h
./prob1.h
../headers//usr/include/getopt.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
main.c
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/stdint.h
../headers/../knetfile.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers/../bgzf.h
./bcf.h
../headers//usr/include/ctype.h
kstring.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./kstring.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
bgzf.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdint.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
./bgzf.h
./knetfile.h
./khash.h
../headers//usr/include/stdlib.h
../headers//usr/include/pthread.h
../headers//usr/include/assert.h
../headers//usr/include/string.h
knetfile.c
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/time.h
../headers//usr/include/x86_64-linux-gnu/sys/select.h
../headers//usr/include/unistd.h
../headers//usr/include/x86_64-linux-gnu/bits/sockaddr.h
../headers//usr/include/x86_64-linux-gnu/bits/socket.h
../headers//usr/include/netdb.h
./knetfile.h
../headers//usr/include/x86_64-linux-gnu/bits/select2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/sys/socket.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/x86_64-linux-gnu/bits/socket_type.h
bedidx.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./khash.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
./ksort.h
./kseq.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/ctype.h
bcf.c
./bcf.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers/../kstring.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
../headers/../bgzf.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
vcf.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers/../kstring.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers/../bgzf.h
./bcf.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/ctype.h
bcfutils.c
./bcf.h
../headers/../khash.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers/../kstring.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdint.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers/../bgzf.h
../headers//usr/include/stdlib.h
../headers//usr/include/assert.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
prob1.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers/../kstring.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers//usr/include/stdint.h
../headers/../bgzf.h
./bcf.h
./prob1.h
../headers//usr/include/stdlib.h
../headers//usr/include/assert.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
em.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
../headers//usr/include/libio.h
./bcf.h
./kmin.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
kfunc.c
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
kmin.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
./kmin.h
../headers//usr/include/stdlib.h
index.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/stdint.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers/../kstring.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers/../bgzf.h
./bcf.h
../headers/../knetfile.h
../headers/../bam_endian.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/ctype.h
fet.c
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
mut.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
../headers//usr/include/libio.h
./bcf.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
bcf2qcall.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
../headers//usr/include/libio.h
./bcf.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libz.so.1
../libs/lib/x86_64-linux-gnu/libpthread.so.0
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/bcftools.1.gz
ace2sam
compile units
ace2sam.c
Gimple
./ace2sam.c.004t.gimple
GKD
./ace2sam.o.gkd
OBJ
obj: ./ace2sam.o
includes
ace2sam.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers/../kstring.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers//usr/include/getopt.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
libraries
../libs/lib/x86_64-linux-gnu/libz.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
md5fa
compile units
md5.c
Gimple
./md5.c.004t.gimple
GKD
./md5.o.gkd
OBJ
obj: ./md5.o
md5fa.c
Gimple
./md5fa.c.004t.gimple
GKD
./md5fa.o.gkd
OBJ
obj: ./md5fa.o
includes
md5.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdint.h
./md5.h
md5fa.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers//usr/include/stdint.h
./md5.h
../headers/../kseq.h
../headers//usr/include/stdlib.h
../headers//usr/include/ctype.h
libraries
../libs/lib/x86_64-linux-gnu/libz.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
wgsim
compile units
wgsim.c
Gimple
./wgsim.c.004t.gimple
GKD
./wgsim.o.gkd
OBJ
obj: ./wgsim.o
includes
wgsim.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/time.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers/../kseq.h
../headers//usr/include/getopt.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libz.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
calDepth
compile units
calDepth.c
Gimple
./calDepth.c.004t.gimple
GKD
./calDepth.o.gkd
OBJ
obj: ./calDepth.o
bam_aux.c
Gimple
./bam_aux.c.004t.gimple
GKD
./bam_aux.o.gkd
OBJ
obj: ./bam_aux.o
unassigned
bam.c
Gimple
./bam.c.004t.gimple
GKD
./bam.o.gkd
OBJ
obj: ./bam.o
bam_import.c
Gimple
./bam_import.c.004t.gimple
GKD
./bam_import.o.gkd
OBJ
obj: ./bam_import.o
sam.c
Gimple
./sam.c.004t.gimple
GKD
./sam.o.gkd
OBJ
obj: ./sam.o
bam_index.c
Gimple
./bam_index.c.004t.gimple
GKD
./bam_index.o.gkd
OBJ
obj: ./bam_index.o
bam_pileup.c
Gimple
./bam_pileup.c.004t.gimple
GKD
./bam_pileup.o.gkd
OBJ
obj: ./bam_pileup.o
faidx.c
Gimple
./faidx.c.004t.gimple
GKD
./faidx.o.gkd
OBJ
obj: ./faidx.o
knetfile.c
Gimple
./knetfile.c.004t.gimple
GKD
./knetfile.o.gkd
OBJ
obj: ./knetfile.o
sam_header.c
Gimple
./sam_header.c.004t.gimple
GKD
./sam_header.o.gkd
OBJ
obj: ./sam_header.o
bgzf.c
Gimple
./bgzf.c.004t.gimple
GKD
./bgzf.o.gkd
OBJ
obj: ./bgzf.o
kstring.c
Gimple
./kstring.c.004t.gimple
GKD
./kstring.o.gkd
OBJ
obj: ./kstring.o
razf.c
Gimple
./razf.c.004t.gimple
GKD
./razf.o.gkd
OBJ
obj: ./razf.o
includes
calDepth.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers/../bgzf.h
../headers/../bam.h
../headers/../sam.h
bam_aux.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./bam.h
./khash.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdint.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/ctype.h
../headers//usr/include/string.h
unassigned
./kstring.h
bam.c
./bam_endian.h
./bam.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./bgzf.h
../headers//usr/include/stdlib.h
./sam_header.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/string.h
bam_import.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
./khash.h
./bam.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./kstring.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
./sam_header.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
sam.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdint.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./bgzf.h
./bam.h
./sam.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/string.h
../headers//usr/include/unistd.h
./faidx.h
bam_index.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./bam_endian.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdint.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./bgzf.h
./bam.h
./khash.h
./ksort.h
./knetfile.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/assert.h
bam_pileup.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./bam.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
./bgzf.h
../headers//usr/include/stdlib.h
../headers//usr/include/assert.h
faidx.c
./khash.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./faidx.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
./knetfile.h
./razf.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
knetfile.c
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/time.h
../headers//usr/include/x86_64-linux-gnu/sys/select.h
../headers//usr/include/unistd.h
../headers//usr/include/x86_64-linux-gnu/bits/sockaddr.h
../headers//usr/include/x86_64-linux-gnu/bits/socket.h
../headers//usr/include/netdb.h
./knetfile.h
../headers//usr/include/x86_64-linux-gnu/bits/select2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/sys/socket.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/x86_64-linux-gnu/bits/socket_type.h
sam_header.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./khash.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/string.h
bgzf.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdint.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
./bgzf.h
./knetfile.h
./khash.h
../headers//usr/include/stdlib.h
../headers//usr/include/pthread.h
../headers//usr/include/assert.h
../headers//usr/include/string.h
kstring.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./kstring.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
razf.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/fcntl.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
./knetfile.h
./razf.h
../headers//usr/include/unistd.h
../headers//usr/include/stdlib.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libz.so.1
../libs/lib/x86_64-linux-gnu/libpthread.so.0
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
bamcheck
compile units
bamcheck.c
Gimple
./bamcheck.c.004t.gimple
GKD
./bamcheck.o.gkd
OBJ
obj: ./bamcheck.o
bam_aux.c
Gimple
./bam_aux.c.004t.gimple
GKD
./bam_aux.o.gkd
OBJ
obj: ./bam_aux.o
unassigned
bam.c
Gimple
./bam.c.004t.gimple
GKD
./bam.o.gkd
OBJ
obj: ./bam.o
bam_import.c
Gimple
./bam_import.c.004t.gimple
GKD
./bam_import.o.gkd
OBJ
obj: ./bam_import.o
sam.c
Gimple
./sam.c.004t.gimple
GKD
./sam.o.gkd
OBJ
obj: ./sam.o
bam_index.c
Gimple
./bam_index.c.004t.gimple
GKD
./bam_index.o.gkd
OBJ
obj: ./bam_index.o
bam_pileup.c
Gimple
./bam_pileup.c.004t.gimple
GKD
./bam_pileup.o.gkd
OBJ
obj: ./bam_pileup.o
razf.c
Gimple
./razf.c.004t.gimple
GKD
./razf.o.gkd
OBJ
obj: ./razf.o
faidx.c
Gimple
./faidx.c.004t.gimple
GKD
./faidx.o.gkd
OBJ
obj: ./faidx.o
knetfile.c
Gimple
./knetfile.c.004t.gimple
GKD
./knetfile.o.gkd
OBJ
obj: ./knetfile.o
sam_header.c
Gimple
./sam_header.c.004t.gimple
GKD
./sam_header.o.gkd
OBJ
obj: ./sam_header.o
bgzf.c
Gimple
./bgzf.c.004t.gimple
GKD
./bgzf.o.gkd
OBJ
obj: ./bgzf.o
kstring.c
Gimple
./kstring.c.004t.gimple
GKD
./kstring.o.gkd
OBJ
obj: ./kstring.o
includes
bamcheck.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers/../khash.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/getopt.h
../headers/../faidx.h
../headers//usr/include/stdint.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers/../bgzf.h
../headers/../bam.h
../headers/../sam.h
../headers/../razf.h
../headers//usr/include/assert.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/ctype.h
../headers//usr/include/string.h
../headers/../sam_header.h
bam_aux.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./bam.h
./khash.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdint.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/ctype.h
../headers//usr/include/string.h
unassigned
./kstring.h
bam.c
./bam_endian.h
./bam.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./bgzf.h
../headers//usr/include/stdlib.h
./sam_header.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/string.h
bam_import.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
./khash.h
./bam.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./kstring.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
./sam_header.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
sam.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdint.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./bgzf.h
./bam.h
./sam.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/string.h
../headers//usr/include/unistd.h
./faidx.h
bam_index.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./bam_endian.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdint.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./bgzf.h
./bam.h
./khash.h
./ksort.h
./knetfile.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/assert.h
bam_pileup.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./bam.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
./bgzf.h
../headers//usr/include/stdlib.h
../headers//usr/include/assert.h
razf.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/fcntl.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
./knetfile.h
./razf.h
../headers//usr/include/unistd.h
../headers//usr/include/stdlib.h
faidx.c
./khash.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./faidx.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
./knetfile.h
./razf.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
knetfile.c
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/time.h
../headers//usr/include/x86_64-linux-gnu/sys/select.h
../headers//usr/include/unistd.h
../headers//usr/include/x86_64-linux-gnu/bits/sockaddr.h
../headers//usr/include/x86_64-linux-gnu/bits/socket.h
../headers//usr/include/netdb.h
./knetfile.h
../headers//usr/include/x86_64-linux-gnu/bits/select2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/sys/socket.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/x86_64-linux-gnu/bits/socket_type.h
sam_header.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./khash.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/string.h
bgzf.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdint.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
./bgzf.h
./knetfile.h
./khash.h
../headers//usr/include/stdlib.h
../headers//usr/include/pthread.h
../headers//usr/include/assert.h
../headers//usr/include/string.h
kstring.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./kstring.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libpthread.so.0
../libs/lib/x86_64-linux-gnu/libz.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
md5sum-lite
compile units
md5.c
Gimple
./md5.c.004t.gimple
GKD
./md5.o.gkd
OBJ
obj: ./md5.o
includes
md5.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdint.h
./md5.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdlib.h
libraries
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
maq2sam-short
compile units
maq2sam.c
Gimple
./maq2sam.c.004t.gimple
GKD
./maq2sam.o.gkd
OBJ
obj: ./maq2sam.o
includes
maq2sam.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers//usr/include/stdlib.h
../headers//usr/include/assert.h
libraries
../libs/lib/x86_64-linux-gnu/libz.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
samtools
compile units
bam_tview.c
Gimple
./bam_tview.c.004t.gimple
GKD
./bam_tview.o.gkd
OBJ
obj: ./bam_tview.o
bam_plcmd.c
Gimple
./bam_plcmd.c.004t.gimple
GKD
./bam_plcmd.o.gkd
OBJ
obj: ./bam_plcmd.o
sam_view.c
Gimple
./sam_view.c.004t.gimple
GKD
./sam_view.o.gkd
OBJ
obj: ./sam_view.o
bam_rmdup.c
Gimple
./bam_rmdup.c.004t.gimple
GKD
./bam_rmdup.o.gkd
OBJ
obj: ./bam_rmdup.o
bam_rmdupse.c
Gimple
./bam_rmdupse.c.004t.gimple
GKD
./bam_rmdupse.o.gkd
OBJ
obj: ./bam_rmdupse.o
bam_mate.c
Gimple
./bam_mate.c.004t.gimple
GKD
./bam_mate.o.gkd
OBJ
obj: ./bam_mate.o
bam_stat.c
Gimple
./bam_stat.c.004t.gimple
GKD
./bam_stat.o.gkd
OBJ
obj: ./bam_stat.o
bam_color.c
Gimple
./bam_color.c.004t.gimple
GKD
./bam_color.o.gkd
OBJ
obj: ./bam_color.o
bamtk.c
Gimple
./bamtk.c.004t.gimple
GKD
./bamtk.o.gkd
OBJ
obj: ./bamtk.o
kaln.c
Gimple
./kaln.c.004t.gimple
GKD
./kaln.o.gkd
OBJ
obj: ./kaln.o
bam2bcf.c
Gimple
./bam2bcf.c.004t.gimple
GKD
./bam2bcf.o.gkd
OBJ
obj: ./bam2bcf.o
bam2bcf_indel.c
Gimple
./bam2bcf_indel.c.004t.gimple
GKD
./bam2bcf_indel.o.gkd
OBJ
obj: ./bam2bcf_indel.o
errmod.c
Gimple
./errmod.c.004t.gimple
GKD
./errmod.o.gkd
OBJ
obj: ./errmod.o
sample.c
Gimple
./sample.c.004t.gimple
GKD
./sample.o.gkd
OBJ
obj: ./sample.o
cut_target.c
Gimple
./cut_target.c.004t.gimple
GKD
./cut_target.o.gkd
OBJ
obj: ./cut_target.o
phase.c
Gimple
./phase.c.004t.gimple
GKD
./phase.o.gkd
OBJ
obj: ./phase.o
bam2depth.c
Gimple
./bam2depth.c.004t.gimple
GKD
./bam2depth.o.gkd
OBJ
obj: ./bam2depth.o
padding.c
Gimple
./padding.c.004t.gimple
GKD
./padding.o.gkd
OBJ
obj: ./padding.o
bedcov.c
Gimple
./bedcov.c.004t.gimple
GKD
./bedcov.o.gkd
OBJ
obj: ./bedcov.o
bamshuf.c
Gimple
./bamshuf.c.004t.gimple
GKD
./bamshuf.o.gkd
OBJ
obj: ./bamshuf.o
bam_tview_curses.c
Gimple
./bam_tview_curses.c.004t.gimple
GKD
./bam_tview_curses.o.gkd
OBJ
obj: ./bam_tview_curses.o
bam_tview_html.c
Gimple
./bam_tview_html.c.004t.gimple
GKD
./bam_tview_html.o.gkd
OBJ
obj: ./bam_tview_html.o
bgzf.c
Gimple
./bgzf.c.004t.gimple
GKD
./bgzf.o.gkd
OBJ
obj: ./bgzf.o
kstring.c
Gimple
./kstring.c.004t.gimple
GKD
./kstring.o.gkd
OBJ
obj: ./kstring.o
bam_aux.c
Gimple
./bam_aux.c.004t.gimple
GKD
./bam_aux.o.gkd
OBJ
obj: ./bam_aux.o
unassigned
bam.c
Gimple
./bam.c.004t.gimple
GKD
./bam.o.gkd
OBJ
obj: ./bam.o
bam_import.c
Gimple
./bam_import.c.004t.gimple
GKD
./bam_import.o.gkd
OBJ
obj: ./bam_import.o
sam.c
Gimple
./sam.c.004t.gimple
GKD
./sam.o.gkd
OBJ
obj: ./sam.o
bam_index.c
Gimple
./bam_index.c.004t.gimple
GKD
./bam_index.o.gkd
OBJ
obj: ./bam_index.o
bam_pileup.c
Gimple
./bam_pileup.c.004t.gimple
GKD
./bam_pileup.o.gkd
OBJ
obj: ./bam_pileup.o
bam_lpileup.c
Gimple
./bam_lpileup.c.004t.gimple
GKD
./bam_lpileup.o.gkd
OBJ
obj: ./bam_lpileup.o
bam_md.c
Gimple
./bam_md.c.004t.gimple
GKD
./bam_md.o.gkd
OBJ
obj: ./bam_md.o
faidx.c
Gimple
./faidx.c.004t.gimple
GKD
./faidx.o.gkd
OBJ
obj: ./faidx.o
bedidx.c
Gimple
./bedidx.c.004t.gimple
GKD
./bedidx.o.gkd
OBJ
obj: ./bedidx.o
knetfile.c
Gimple
./knetfile.c.004t.gimple
GKD
./knetfile.o.gkd
OBJ
obj: ./knetfile.o
bam_sort.c
Gimple
./bam_sort.c.004t.gimple
GKD
./bam_sort.o.gkd
OBJ
obj: ./bam_sort.o
sam_header.c
Gimple
./sam_header.c.004t.gimple
GKD
./sam_header.o.gkd
OBJ
obj: ./sam_header.o
bam_reheader.c
Gimple
./bam_reheader.c.004t.gimple
GKD
./bam_reheader.o.gkd
OBJ
obj: ./bam_reheader.o
kprobaln.c
Gimple
./kprobaln.c.004t.gimple
GKD
./kprobaln.o.gkd
OBJ
obj: ./kprobaln.o
bam_cat.c
Gimple
./bam_cat.c.004t.gimple
GKD
./bam_cat.o.gkd
OBJ
obj: ./bam_cat.o
razf.c
Gimple
./razf.c.004t.gimple
GKD
./razf.o.gkd
OBJ
obj: ./razf.o
bcf.c
Gimple
./bcf.c.004t.gimple
GKD
./bcf.o.gkd
OBJ
obj: ./bcf.o
bcfutils.c
Gimple
./bcfutils.c.004t.gimple
GKD
./bcfutils.o.gkd
OBJ
obj: ./bcfutils.o
fet.c
Gimple
./fet.c.004t.gimple
GKD
./fet.o.gkd
OBJ
obj: ./fet.o
includes
bam_tview.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./bam_tview.h
./khash.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdint.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./bgzf.h
./bam.h
./faidx.h
./errmod.h
./bam2bcf.h
../headers//usr/include/getopt.h
../headers//usr/include/stdlib.h
./sam_header.h
../headers//usr/include/assert.h
bam_plcmd.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./kstring.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/getopt.h
../headers//usr/include/stdint.h
./bgzf.h
./bam.h
./faidx.h
./errmod.h
../headers/bcftools/bcf.h
./bam2bcf.h
./sample.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/string.h
sam_view.c
./khash.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
./kstring.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./bgzf.h
./bam.h
./sam.h
../headers//usr/include/getopt.h
bam_rmdup.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./khash.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./bam.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./bgzf.h
./sam.h
../headers//usr/include/getopt.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
bam_rmdupse.c
./khash.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./bam.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdint.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./bgzf.h
./sam.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
bam_mate.c
./kstring.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./bgzf.h
./bam.h
../headers//usr/include/getopt.h
../headers//usr/include/stdlib.h
bam_stat.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdint.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./bgzf.h
./bam.h
../headers//usr/include/getopt.h
../headers//usr/include/stdlib.h
../headers//usr/include/assert.h
bam_color.c
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdint.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
./bam.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
bamtk.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
kaln.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./kaln.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
bam2bcf.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./kstring.h
../headers//usr/include/stdint.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./bgzf.h
./bam.h
./errmod.h
../headers/bcftools/bcf.h
./bam2bcf.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
bam2bcf_indel.c
./khash.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdint.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./bam.h
./errmod.h
./bam2bcf.h
./kprobaln.h
./ksort.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/assert.h
../headers//usr/include/ctype.h
errmod.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdint.h
./errmod.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
./ksort.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
sample.c
./khash.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./kstring.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
./sample.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/string.h
cut_target.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./bgzf.h
./bam.h
./errmod.h
./faidx.h
../headers//usr/include/getopt.h
phase.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./bam.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
./bgzf.h
./errmod.h
./khash.h
./ksort.h
../headers//usr/include/getopt.h
../headers//usr/include/ctype.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
bam2depth.c
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./bgzf.h
./bam.h
../headers//usr/include/getopt.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
padding.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./kstring.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./bgzf.h
./bam.h
./sam.h
./faidx.h
../headers//usr/include/getopt.h
../headers//usr/include/stdlib.h
../headers//usr/include/assert.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
bedcov.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./kstring.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./bgzf.h
./bam.h
../headers//usr/include/getopt.h
../headers//usr/include/ctype.h
bamshuf.c
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
./bgzf.h
./bam.h
./ksort.h
../headers//usr/include/getopt.h
../headers//usr/include/unistd.h
../headers//usr/include/assert.h
../headers//usr/include/string.h
bam_tview_curses.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdint.h
../headers//usr/include/curses.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
./bgzf.h
./bam.h
./faidx.h
./errmod.h
./bam2bcf.h
./khash.h
./bam_tview.h
../headers//usr/include/stdlib.h
../headers//usr/include/ctype.h
bam_tview_html.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdint.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./bgzf.h
./bam.h
./faidx.h
./errmod.h
./bam2bcf.h
./khash.h
./bam_tview.h
../headers//usr/include/unistd.h
bgzf.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdint.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
./bgzf.h
./knetfile.h
./khash.h
../headers//usr/include/stdlib.h
../headers//usr/include/pthread.h
../headers//usr/include/assert.h
../headers//usr/include/string.h
kstring.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./kstring.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
bam_aux.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./bam.h
./khash.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdint.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/ctype.h
../headers//usr/include/string.h
unassigned
./kstring.h
bam.c
./bam_endian.h
./bam.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./bgzf.h
../headers//usr/include/stdlib.h
./sam_header.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/string.h
bam_import.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
./khash.h
./bam.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./kstring.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
./sam_header.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
sam.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdint.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./bgzf.h
./bam.h
./sam.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/string.h
../headers//usr/include/unistd.h
./faidx.h
bam_index.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./bam_endian.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdint.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./bgzf.h
./bam.h
./khash.h
./ksort.h
./knetfile.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/assert.h
bam_pileup.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./bam.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
./bgzf.h
../headers//usr/include/stdlib.h
../headers//usr/include/assert.h
bam_lpileup.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./bam.h
./ksort.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/assert.h
bam_md.c
./kstring.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
./faidx.h
../headers//usr/include/stdint.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./bgzf.h
./bam.h
./sam.h
./kprobaln.h
../headers//usr/include/getopt.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/ctype.h
faidx.c
./khash.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./faidx.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
./knetfile.h
./razf.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
bedidx.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./khash.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
./ksort.h
./kseq.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/ctype.h
knetfile.c
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/time.h
../headers//usr/include/x86_64-linux-gnu/sys/select.h
../headers//usr/include/unistd.h
../headers//usr/include/x86_64-linux-gnu/bits/sockaddr.h
../headers//usr/include/x86_64-linux-gnu/bits/socket.h
../headers//usr/include/netdb.h
./knetfile.h
../headers//usr/include/x86_64-linux-gnu/bits/select2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/sys/socket.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/x86_64-linux-gnu/bits/socket_type.h
bam_sort.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./bgzf.h
./bam.h
./ksort.h
../headers//usr/include/ctype.h
../headers//usr/include/pthread.h
../headers//usr/include/getopt.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
sam_header.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./khash.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/string.h
bam_reheader.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
./bgzf.h
./bam.h
kprobaln.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./kprobaln.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
../headers//usr/include/stdlib.h
bam_cat.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
./knetfile.h
./bgzf.h
./bam.h
../headers//usr/include/getopt.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
razf.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/fcntl.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
./knetfile.h
./razf.h
../headers//usr/include/unistd.h
../headers//usr/include/stdlib.h
bcf.c
./bcf.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers/../kstring.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
../headers/../bgzf.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
bcfutils.c
./bcf.h
../headers/../khash.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers/../kstring.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdint.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers/../bgzf.h
../headers//usr/include/stdlib.h
../headers//usr/include/assert.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
fet.c
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
libraries
../libs/lib/x86_64-linux-gnu/libncurses.so.5
../libs/lib/x86_64-linux-gnu/libtinfo.so.5
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libz.so.1
../libs/lib/x86_64-linux-gnu/libpthread.so.0
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/samtools.1.gz