proda - amd64

unassigned

AlignedFragment.cc

Gimple

./AlignedFragment.cc.004t.gimple

GKD

./AlignedFragment.o.gkd

OBJ

obj: ./AlignedFragment.o

Assert.cc

Gimple

./Assert.cc.004t.gimple

GKD

./Assert.o.gkd

OBJ

obj: ./Assert.o

unassigned

Block.cc

Gimple

./Block.cc.004t.gimple

GKD

./Block.o.gkd

OBJ

obj: ./Block.o

unassigned

Consistency.cc

Gimple

./Consistency.cc.004t.gimple

GKD

./Consistency.o.gkd

OBJ

obj: ./Consistency.o

unassigned

GlobalAlign.cc

Gimple

./GlobalAlign.cc.004t.gimple

GKD

./GlobalAlign.o.gkd

OBJ

obj: ./GlobalAlign.o

unassigned

LocalAlign.cc

Gimple

./LocalAlign.cc.004t.gimple

GKD

./LocalAlign.o.gkd

OBJ

obj: ./LocalAlign.o

unassigned

Main.cc

Gimple

./Main.cc.004t.gimple

GKD

./Main.o.gkd

OBJ

obj: ./Main.o

unassigned

PairAligner.cc

Gimple

./PairAligner.cc.004t.gimple

GKD

./PairAligner.o.gkd

OBJ

obj: ./PairAligner.o

unassigned

Matrix.cc

Gimple

./Matrix.cc.004t.gimple

GKD

./Matrix.o.gkd

OBJ

obj: ./Matrix.o

unassigned

MultiSequence.cc

Gimple

./MultiSequence.cc.004t.gimple

GKD

./MultiSequence.o.gkd

OBJ

obj: ./MultiSequence.o

unassigned

ProbModel.cc

Gimple

./ProbModel.cc.004t.gimple

GKD

./ProbModel.o.gkd

OBJ

obj: ./ProbModel.o

Score.cc

Gimple

./Score.cc.004t.gimple

GKD

./Score.o.gkd

OBJ

obj: ./Score.o

unassigned

ScoreMatrix.cc

Gimple

./ScoreMatrix.cc.004t.gimple

GKD

./ScoreMatrix.o.gkd

OBJ

obj: ./ScoreMatrix.o

Sequence.cc

Gimple

./Sequence.cc.004t.gimple

GKD

./Sequence.o.gkd

OBJ

obj: ./Sequence.o

unassigned

SparseMatrix.cc

Gimple

./SparseMatrix.cc.004t.gimple

GKD

./SparseMatrix.o.gkd

OBJ

obj: ./SparseMatrix.o

unassigned

Tree.cc

Gimple

./Tree.cc.004t.gimple

GKD

./Tree.o.gkd

OBJ

obj: ./Tree.o

Utilities.cc

Gimple

./Utilities.cc.004t.gimple

GKD

./Utilities.o.gkd

OBJ

obj: ./Utilities.o

includes

unassigned

../headers//usr/include/c++/4.9/new ./AlignedFragment.h ./Utilities.h

AlignedFragment.cc

../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/cstring ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/string.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/wchar.h ../headers//usr/include/_G_config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/wctype.h

Assert.cc

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers//usr/include/stdio.h

unassigned

../headers//usr/include/c++/4.9/new ./AlignedFragment.h ./Matrix.h ./Utilities.h

Block.cc

../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdlib.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/wchar.h ../headers//usr/include/_G_config.h ./Score.h ./SparseMatrix.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/wctype.h ./Sequence.h ./ScoreMatrix.h ./Types.h ./MultiSequence.h ./Block.h

unassigned

./Matrix.h

Consistency.cc

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/wchar.h ../headers//usr/include/_G_config.h ./Score.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/wctype.h ./ScoreMatrix.h ./SparseMatrix.h

unassigned

./Matrix.h ./Utilities.h

GlobalAlign.cc

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/wchar.h ../headers//usr/include/_G_config.h ./Score.h ./SparseMatrix.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/wctype.h ./AlignedFragment.h ./Sequence.h ./ScoreMatrix.h ./MultiSequence.h ./GlobalAlign.h

unassigned

./Matrix.h

LocalAlign.cc

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/wchar.h ../headers//usr/include/_G_config.h ./Score.h ./SparseMatrix.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/wctype.h ./Sequence.h ./ScoreMatrix.h ./LocalAlign.h ./ProbModel.h

unassigned

./AlignedFragment.h ./Matrix.h ./PairAligner.h

Main.cc

../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/wchar.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/wctype.h ./Sequence.h ./Score.h ./SparseMatrix.h ./ScoreMatrix.h ./Types.h ./MultiSequence.h ./ProbModel.h ./Tree.h

unassigned

../headers//usr/include/c++/4.9/new ./Utilities.h

PairAligner.cc

../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdlib.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstring ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/string.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/wchar.h ../headers//usr/include/_G_config.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/wctype.h ./AlignedFragment.h ./Sequence.h ./Score.h ./SparseMatrix.h ./Matrix.h ./ScoreMatrix.h ./Types.h ./ProbModel.h ./PairAligner.h

unassigned

./Score.h ./Matrix.h

Matrix.cc

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/wchar.h ../headers//usr/include/_G_config.h ./SparseMatrix.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/wctype.h ./ScoreMatrix.h

unassigned

./Utilities.h ./AlignedFragment.h

MultiSequence.cc

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/wchar.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/wctype.h ./Sequence.h ./Score.h ./MultiSequence.h

unassigned

./Score.h ./ScoreMatrix.h ./Matrix.h ./Utilities.h

ProbModel.cc

../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/wchar.h ../headers//usr/include/_G_config.h ../headers//usr/include/c++/4.9/cstring ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/string.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ./SparseMatrix.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/wctype.h ./Sequence.h ./Types.h ./ProbModel.h

Score.cc

./Score.h

unassigned

./Score.h ./ScoreMatrix.h

ScoreMatrix.cc

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/wchar.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/wctype.h ./ProbModel.h

Sequence.cc

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/wchar.h ../headers//usr/include/_G_config.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/wctype.h ./Sequence.h

unassigned

./Matrix.h ./SparseMatrix.h

SparseMatrix.cc

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/wchar.h ../headers//usr/include/_G_config.h ./Score.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/wctype.h ./ScoreMatrix.h

unassigned

../headers//usr/include/c++/4.9/new ./Matrix.h

Tree.cc

../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/wchar.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ./Score.h ./SparseMatrix.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/wctype.h ./AlignedFragment.h ./Sequence.h ./ScoreMatrix.h ./Types.h ./MultiSequence.h ./Tree.h

Utilities.cc

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h