probalign - amd64

unassigned

Main.cc

Class

./Main.cc.002t.class

Gimple

./Main.cc.004t.gimple

GKD

./Main.o.gkd

OBJ

obj: ./Main.o

PostProbs.cc

Class

./PostProbs.cc.002t.class

Gimple

./PostProbs.cc.004t.gimple

GKD

./PostProbs.o.gkd

OBJ

obj: ./PostProbs.o

unassigned

ComputeAlignment.cc

Class

./ComputeAlignment.cc.002t.class

Gimple

./ComputeAlignment.cc.004t.gimple

GKD

./ComputeAlignment.o.gkd

OBJ

obj: ./ComputeAlignment.o

ReadMatrix.cc

Class

./ReadMatrix.cc.002t.class

Gimple

./ReadMatrix.cc.004t.gimple

GKD

./ReadMatrix.o.gkd

OBJ

obj: ./ReadMatrix.o

includes

unassigned

../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ./Sequence.h

Main.cc

./MultiSequence.h ./SparseMatrix.h ./EvolutionaryTree.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ./FileBuffer.h ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/istream ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ./SafeVector.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/cstring ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/fstream.tcc ../headers//usr/include/c++/4.9/bits/ostream_insert.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/string.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/assert.h ../headers//usr/include/x86_64-linux-gnu/bits/errno.h ../headers//usr/include/ctype.h

PostProbs.cc

../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ./SafeVector.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/string.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h

unassigned

./Sequence.h ./SparseMatrix.h ./MultiSequence.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h

ComputeAlignment.cc

../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ./SafeVector.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/wchar.h ../headers//usr/include/_G_config.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h ./FileBuffer.h ../headers//usr/include/assert.h

ReadMatrix.cc

../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ./Matrix.h ../headers//usr/include/stdio.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h