maq - amd64

main.c

Gimple

./main.c.004t.gimple

GKD

./main.o.gkd

OBJ

obj: ./main.o

const.c

Gimple

./const.c.004t.gimple

GKD

./const.o.gkd

OBJ

obj: ./const.o

seq.c

Gimple

./seq.c.004t.gimple

GKD

./seq.o.gkd

OBJ

obj: ./seq.o

bfa.c

Gimple

./bfa.c.004t.gimple

GKD

./bfa.o.gkd

OBJ

obj: ./bfa.o

read.cc

Gimple

./read.cc.004t.gimple

GKD

./read.o.gkd

OBJ

obj: ./read.o

fasta2bfa.c

Gimple

./fasta2bfa.c.004t.gimple

GKD

./fasta2bfa.o.gkd

OBJ

obj: ./fasta2bfa.o

fastq2bfq.c

Gimple

./fastq2bfq.c.004t.gimple

GKD

./fastq2bfq.o.gkd

OBJ

obj: ./fastq2bfq.o

merge.cc

Gimple

./merge.cc.004t.gimple

GKD

./merge.o.gkd

OBJ

obj: ./merge.o

match_aux.cc

Gimple

./match_aux.cc.004t.gimple

GKD

./match_aux.o.gkd

OBJ

obj: ./match_aux.o

match.cc

Gimple

./match.cc.004t.gimple

GKD

./match.o.gkd

OBJ

obj: ./match.o

sort_mapping.cc

Gimple

./sort_mapping.cc.004t.gimple

GKD

./sort_mapping.o.gkd

OBJ

obj: ./sort_mapping.o

assemble.cc

Gimple

./assemble.cc.004t.gimple

GKD

./assemble.o.gkd

OBJ

obj: ./assemble.o

pileup.cc

Gimple

./pileup.cc.004t.gimple

GKD

./pileup.o.gkd

OBJ

obj: ./pileup.o

mapcheck.cc

Gimple

./mapcheck.cc.004t.gimple

GKD

./mapcheck.o.gkd

OBJ

obj: ./mapcheck.o

get_pos.c

Gimple

./get_pos.c.004t.gimple

GKD

./get_pos.o.gkd

OBJ

obj: ./get_pos.o

assopt.c

Gimple

./assopt.c.004t.gimple

GKD

./assopt.o.gkd

OBJ

obj: ./assopt.o

aux_utils.c

Gimple

./aux_utils.c.004t.gimple

GKD

./aux_utils.o.gkd

OBJ

obj: ./aux_utils.o

rbcc.cc

Gimple

./rbcc.cc.004t.gimple

GKD

./rbcc.o.gkd

OBJ

obj: ./rbcc.o

subsnp.cc

Gimple

./subsnp.cc.004t.gimple

GKD

./subsnp.o.gkd

OBJ

obj: ./subsnp.o

pair_stat.cc

Gimple

./pair_stat.cc.004t.gimple

GKD

./pair_stat.o.gkd

OBJ

obj: ./pair_stat.o

indel_soa.cc

Gimple

./indel_soa.cc.004t.gimple

GKD

./indel_soa.o.gkd

OBJ

obj: ./indel_soa.o

maqmap.c

Gimple

./maqmap.c.004t.gimple

GKD

./maqmap.o.gkd

OBJ

obj: ./maqmap.o

maqmap_conv.c

Gimple

./maqmap_conv.c.004t.gimple

GKD

./maqmap_conv.o.gkd

OBJ

obj: ./maqmap_conv.o

altchr.cc

Gimple

./altchr.cc.004t.gimple

GKD

./altchr.o.gkd

OBJ

obj: ./altchr.o

submap.c

Gimple

./submap.c.004t.gimple

GKD

./submap.o.gkd

OBJ

obj: ./submap.o

rmdup.cc

Gimple

./rmdup.cc.004t.gimple

GKD

./rmdup.o.gkd

OBJ

obj: ./rmdup.o

simulate.c

Gimple

./simulate.c.004t.gimple

GKD

./simulate.o.gkd

OBJ

obj: ./simulate.o

genran.c

Gimple

./genran.c.004t.gimple

GKD

./genran.o.gkd

OBJ

obj: ./genran.o

indel_pe.cc

Gimple

./indel_pe.cc.004t.gimple

GKD

./indel_pe.o.gkd

OBJ

obj: ./indel_pe.o

stdaln.c

Gimple

./stdaln.c.004t.gimple

GKD

./stdaln.o.gkd

OBJ

obj: ./stdaln.o

indel_call.cc

Gimple

./indel_call.cc.004t.gimple

GKD

./indel_call.o.gkd

OBJ

obj: ./indel_call.o

eland2maq.cc

Gimple

./eland2maq.cc.004t.gimple

GKD

./eland2maq.o.gkd

OBJ

obj: ./eland2maq.o

csmap2ntmap.cc

Gimple

./csmap2ntmap.cc.004t.gimple

GKD

./csmap2ntmap.o.gkd

OBJ

obj: ./csmap2ntmap.o

break_pair.c

Gimple

./break_pair.c.004t.gimple

GKD

./break_pair.o.gkd

OBJ

obj: ./break_pair.o

glfgen.cc

Gimple

./glfgen.cc.004t.gimple

GKD

./glfgen.o.gkd

OBJ

obj: ./glfgen.o

includes

main.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ./main.h

const.c

./const.h

seq.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ./seq.h ../headers//usr/include/stdlib.h ../headers//usr/include/ctype.h

bfa.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ./const.h ./bfa.h ../headers//usr/include/stdlib.h

read.cc

../headers//usr/include/ctype.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ./read.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ./dword.hh ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ./const.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ./seq.h ./match.hh ../headers//usr/include/getopt.h ../headers//usr/include/string.h ../headers//usr/include/assert.h

fasta2bfa.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ./const.h ./bfa.h ./seq.h ../headers//usr/include/getopt.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/string2.h ../headers//usr/include/string.h ../headers//usr/include/assert.h

fastq2bfq.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/zlib.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ./const.h ./seq.h ../headers//usr/include/getopt.h ../headers//usr/include/string.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h

merge.cc

./algo.hh ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/zlib.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ./const.h ./maqmap.h ../headers//usr/include/stdlib.h ../headers//usr/include/assert.h

match_aux.cc

./dword.hh ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/time.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ./const.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ./read.h ./maqmap.h ./match.hh ../headers//usr/include/stdlib.h ../headers//usr/include/string.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h

match.cc

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ./dword.hh ./algo.hh ../headers//usr/include/ctype.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/bits/time.h ../headers//usr/include/zlib.h ../headers//usr/include/x86_64-linux-gnu/bits/resource.h ../headers//usr/include/x86_64-linux-gnu/sys/resource.h ./const.h ./match.hh ./bfa.h ../headers//usr/include/getopt.h ../headers//usr/include/string.h ./read.h

sort_mapping.cc

./dword.hh ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ./algo.hh ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/zlib.h ./const.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ./read.h ./maqmap.h ./match.hh

assemble.cc

./algo.hh ./stdhash.hh ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ./const.h ./maqmap.h ./bfa.h ./assemble.h ../headers//usr/include/stdlib.h ../headers//usr/include/string.h

pileup.cc

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ./stdhash.hh ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/zlib.h ./const.h ./maqmap.h ./bfa.h ./assemble.h ../headers//usr/include/getopt.h

mapcheck.cc

../headers//usr/include/stdlib.h ./stdhash.hh ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ./const.h ./bfa.h ../headers//usr/include/zlib.h ./maqmap.h ./assemble.h ../headers//usr/include/getopt.h ../headers//usr/include/string.h ../headers//usr/include/assert.h

get_pos.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ./const.h ./maqmap.h ../headers//usr/include/libio.h ./assemble.h ../headers//usr/include/stdio.h ../headers//usr/include/stdlib.h ../headers//usr/include/assert.h

assopt.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/zlib.h ./assemble.h ../headers//usr/include/getopt.h

aux_utils.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ./const.h ../headers//usr/include/getopt.h ../headers//usr/include/assert.h ../headers//usr/include/x86_64-linux-gnu/bits/string2.h ../headers//usr/include/ctype.h

rbcc.cc

./stdhash.hh ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/unistd.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ./const.h ../headers//usr/include/getopt.h ../headers//usr/include/string.h ../headers//usr/include/stdlib.h ../headers//usr/include/assert.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h

subsnp.cc

./stdhash.hh ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/zlib.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ./const.h ../headers//usr/include/getopt.h ../headers//usr/include/string.h ../headers//usr/include/assert.h

pair_stat.cc

./stdhash.hh ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ./const.h ./maqmap.h ./bfa.h ../headers//usr/include/stdlib.h ../headers//usr/include/string.h ../headers//usr/include/assert.h

indel_soa.cc

./stdhash.hh ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/zlib.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ./const.h ./bfa.h ./maqmap.h ../headers//usr/include/getopt.h ../headers//usr/include/stdlib.h ../headers//usr/include/string.h ../headers//usr/include/assert.h

maqmap.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ./const.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ./maqmap.h ../headers//usr/include/getopt.h ../headers//usr/include/stdlib.h ../headers//usr/include/string.h ../headers//usr/include/assert.h

maqmap_conv.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ./const.h ./maqmap.h ../headers//usr/include/stdlib.h ../headers//usr/include/assert.h

altchr.cc

./stdhash.hh ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ./const.h ./bfa.h ../headers//usr/include/string.h ../headers//usr/include/stdlib.h ../headers//usr/include/assert.h

submap.c

../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/zlib.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ./const.h ./maqmap.h ../headers//usr/include/getopt.h

rmdup.cc

./stdhash.hh ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ./const.h ./maqmap.h ../headers//usr/include/stdlib.h ../headers//usr/include/string.h ../headers//usr/include/assert.h

simulate.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ./seq.h ./const.h ./maqmap.h ../headers//usr/include/getopt.h ../headers//usr/include/assert.h

genran.c

../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h

indel_pe.cc

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ./dword.hh ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/time.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ./const.h ./bfa.h ./stdaln.h ../headers//usr/include/zlib.h ./match.hh ./read.h

stdaln.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ./stdaln.h ../headers//usr/include/stdlib.h ../headers//usr/include/string.h

indel_call.cc

./stdhash.hh ./algo.hh ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/zlib.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ./const.h ./maqmap.h ./assemble.h ./bfa.h ../headers//usr/include/stdlib.h ../headers//usr/include/string.h

eland2maq.cc

./algo.hh ./stdhash.hh ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/include/ctype.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ./const.h ./maqmap.h ../headers//usr/include/getopt.h ../headers//usr/include/string.h ../headers//usr/include/assert.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h

csmap2ntmap.cc

./stdhash.hh ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/zlib.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ./const.h ./maqmap.h ./bfa.h ../headers//usr/include/stdlib.h ../headers//usr/include/string.h ../headers//usr/include/assert.h

break_pair.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ./const.h ./maqmap.h ../headers//usr/include/assert.h

glfgen.cc

./stdhash.hh ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ./algo.hh ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ./const.h ./maqmap.h ./bfa.h ./assemble.h ./glf.h ../headers//usr/include/stdlib.h ../headers//usr/include/string.h