libstaden-read-dev - amd64

srf_index_hash.c

Gimple

./srf_index_hash.c.004t.gimple

GKD

./srf_index_hash.o.gkd

OBJ

obj: ./srf_index_hash.o

includes

srf_index_hash.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdint.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/os.h ../headers/../io_lib/array.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers/../io_lib/srf.h ../headers//usr/include/stdlib.h ../headers//usr/include/unistd.h

scram_test.c

Gimple

./scram_test.c.004t.gimple

GKD

./scram_test.o.gkd

OBJ

obj: ./scram_test.o

includes

scram_test.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/stdint.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/dstring.h ../headers/../io_lib/string_alloc.h ../headers/../io_lib/sam_header.h ../headers/../io_lib/thread_pool.h ../headers/../io_lib/bam.h ../headers/../io_lib/cram_structs.h ../headers/../io_lib/binning.h ../headers/../io_lib/cram_codecs.h ../headers/../io_lib/scram.h ../headers//usr/include/getopt.h ../headers/../io_lib/cram_index.h ../headers//usr/include/string.h ../headers/../io_lib/cram_io.h

extract_seq.c

Gimple

./extract_seq.c.004t.gimple

GKD

./extract_seq.o.gkd

OBJ

obj: ./extract_seq.o

includes

extract_seq.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/Read.h ../headers/../io_lib/array.h ../headers/../io_lib/expFileIO.h ../headers//usr/include/string.h ../headers/../io_lib/compress.h

scram_flagstat.c

Gimple

./scram_flagstat.c.004t.gimple

GKD

./scram_flagstat.o.gkd

OBJ

obj: ./scram_flagstat.o

includes

scram_flagstat.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/stdint.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/dstring.h ../headers/../io_lib/string_alloc.h ../headers/../io_lib/sam_header.h ../headers/../io_lib/thread_pool.h ../headers/../io_lib/bam.h ../headers/../io_lib/cram_structs.h ../headers/../io_lib/binning.h ../headers/../io_lib/cram_codecs.h ../headers/../io_lib/scram.h ../headers//usr/include/getopt.h ../headers/../io_lib/cram_index.h ../headers//usr/include/string.h ../headers/../io_lib/cram_io.h

scramble.c

Gimple

./scramble.c.004t.gimple

GKD

./scramble.o.gkd

OBJ

obj: ./scramble.o

includes

scramble.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/stdint.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/dstring.h ../headers/../io_lib/string_alloc.h ../headers/../io_lib/sam_header.h ../headers/../io_lib/thread_pool.h ../headers/../io_lib/bam.h ../headers/../io_lib/cram_structs.h ../headers/../io_lib/binning.h ../headers/../io_lib/cram_codecs.h ../headers/../io_lib/scram.h ../headers//usr/include/getopt.h ../headers//usr/include/string.h

cram_index.c

Gimple

./cram_index.c.004t.gimple

GKD

./cram_index.o.gkd

OBJ

obj: ./cram_index.o

includes

cram_index.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/stdint.h ../headers/../io_lib/dstring.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/string_alloc.h ../headers/../io_lib/sam_header.h ../headers/../io_lib/thread_pool.h ../headers//usr/include/zlib.h ../headers/../io_lib/bam.h ../headers/../io_lib/cram_structs.h ../headers/../io_lib/binning.h ../headers/../io_lib/cram_codecs.h ../headers/../io_lib/zfio.h ../headers/../io_lib/cram_io.h ../headers/../io_lib/cram_index.h

cram_dump.c

Gimple

./cram_dump.c.004t.gimple

GKD

./cram_dump.o.gkd

OBJ

obj: ./cram_dump.o

includes

cram_dump.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/stdint.h ../headers/../io_lib/dstring.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/string_alloc.h ../headers/../io_lib/sam_header.h ../headers/../io_lib/thread_pool.h ../headers/../io_lib/bam.h ../headers/../io_lib/cram_structs.h ../headers/../io_lib/binning.h ../headers/../io_lib/cram_codecs.h ../headers//usr/include/assert.h ../headers//usr/include/ctype.h

srf_filter.c

Gimple

./srf_filter.c.004t.gimple

GKD

./srf_filter.o.gkd

OBJ

obj: ./srf_filter.o

includes

srf_filter.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdint.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/srf.h ../headers//usr/include/getopt.h ../headers//usr/include/string.h ../headers/../io_lib/xalloc.h ../headers//usr/include/x86_64-linux-gnu/bits/errno.h

srf_extract_hash.c

Gimple

./srf_extract_hash.c.004t.gimple

GKD

./srf_extract_hash.o.gkd

OBJ

obj: ./srf_extract_hash.o

includes

srf_extract_hash.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdint.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers/../io_lib/srf.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h ../headers//usr/include/stdlib.h ../headers/../io_lib/Read.h

srf_extract_linear.c

Gimple

./srf_extract_linear.c.004t.gimple

GKD

./srf_extract_linear.o.gkd

OBJ

obj: ./srf_extract_linear.o

includes

srf_extract_linear.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/stdint.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers/../io_lib/srf.h ../headers//usr/include/stdlib.h

srf_index_hash.c

Gimple

./srf_index_hash.c.004t.gimple

GKD

./srf_index_hash.o.gkd

OBJ

obj: ./srf_index_hash.o

includes

srf_index_hash.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdint.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/os.h ../headers/../io_lib/array.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers/../io_lib/srf.h ../headers//usr/include/stdlib.h ../headers//usr/include/unistd.h

scramble.c

Gimple

./scramble.c.004t.gimple

GKD

./scramble.o.gkd

OBJ

obj: ./scramble.o

includes

scramble.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/stdint.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/dstring.h ../headers/../io_lib/string_alloc.h ../headers/../io_lib/sam_header.h ../headers/../io_lib/thread_pool.h ../headers/../io_lib/bam.h ../headers/../io_lib/cram_structs.h ../headers/../io_lib/binning.h ../headers/../io_lib/cram_codecs.h ../headers/../io_lib/scram.h ../headers//usr/include/getopt.h ../headers//usr/include/string.h

srf_info.c

Gimple

./srf_info.c.004t.gimple

GKD

./srf_info.o.gkd

OBJ

obj: ./srf_info.o

includes

srf_info.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdint.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/srf.h ../headers//usr/include/getopt.h ../headers//usr/include/string.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/string2.h ../headers/../io_lib/xalloc.h

hash_list.c

Gimple

./hash_list.c.004t.gimple

GKD

./hash_list.o.gkd

OBJ

obj: ./hash_list.o

includes

hash_list.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdint.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h

index_tar.c

Gimple

./index_tar.c.004t.gimple

GKD

./index_tar.o.gkd

OBJ

obj: ./index_tar.o

includes

index_tar.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/tar_format.h ../headers//usr/include/stdlib.h

extract_qual.c

Gimple

./extract_qual.c.004t.gimple

GKD

./extract_qual.o.gkd

OBJ

obj: ./extract_qual.o

includes

extract_qual.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/Read.h ../headers/../io_lib/array.h ../headers/../io_lib/expFileIO.h ../headers//usr/include/string.h ../headers/../io_lib/xalloc.h

Read.c

Gimple

./Read.c.004t.gimple

GKD

./Read.o.gkd

OBJ

obj: ./Read.o

scf_extras.c

Gimple

./scf_extras.c.004t.gimple

GKD

./scf_extras.o.gkd

OBJ

obj: ./scf_extras.o

translate.c

Gimple

./translate.c.004t.gimple

GKD

./translate.o.gkd

OBJ

obj: ./translate.o

compression.c

Gimple

./compression.c.004t.gimple

GKD

./compression.o.gkd

OBJ

obj: ./compression.o

ztr.c

Gimple

./ztr.c.004t.gimple

GKD

./ztr.o.gkd

OBJ

obj: ./ztr.o

ztr_translate.c

Gimple

./ztr_translate.c.004t.gimple

GKD

./ztr_translate.o.gkd

OBJ

obj: ./ztr_translate.o

deflate_interlaced.c

Gimple

./deflate_interlaced.c.004t.gimple

GKD

./deflate_interlaced.o.gkd

OBJ

obj: ./deflate_interlaced.o

fpoint.c

Gimple

./fpoint.c.004t.gimple

GKD

./fpoint.o.gkd

OBJ

obj: ./fpoint.o

seqIOABI.c

Gimple

./seqIOABI.c.004t.gimple

GKD

./seqIOABI.o.gkd

OBJ

obj: ./seqIOABI.o

seqIOALF.c

Gimple

./seqIOALF.c.004t.gimple

GKD

./seqIOALF.o.gkd

OBJ

obj: ./seqIOALF.o

expFileIO.c

Gimple

./expFileIO.c.004t.gimple

GKD

./expFileIO.o.gkd

OBJ

obj: ./expFileIO.o

seqIOPlain.c

Gimple

./seqIOPlain.c.004t.gimple

GKD

./seqIOPlain.o.gkd

OBJ

obj: ./seqIOPlain.o

misc_scf.c

Gimple

./misc_scf.c.004t.gimple

GKD

./misc_scf.o.gkd

OBJ

obj: ./misc_scf.o

read_scf.c

Gimple

./read_scf.c.004t.gimple

GKD

./read_scf.o.gkd

OBJ

obj: ./read_scf.o

write_scf.c

Gimple

./write_scf.c.004t.gimple

GKD

./write_scf.o.gkd

OBJ

obj: ./write_scf.o

sff.c

Gimple

./sff.c.004t.gimple

GKD

./sff.o.gkd

OBJ

obj: ./sff.o

srf.c

Gimple

./srf.c.004t.gimple

GKD

./srf.o.gkd

OBJ

obj: ./srf.o

array.c

Gimple

./array.c.004t.gimple

GKD

./array.o.gkd

OBJ

obj: ./array.o

compress.c

Gimple

./compress.c.004t.gimple

GKD

./compress.o.gkd

OBJ

obj: ./compress.o

error.c

Gimple

./error.c.004t.gimple

GKD

./error.o.gkd

OBJ

obj: ./error.o

files.c

Gimple

./files.c.004t.gimple

GKD

./files.o.gkd

OBJ

obj: ./files.o

find.c

Gimple

./find.c.004t.gimple

GKD

./find.o.gkd

OBJ

obj: ./find.o

mach-io.c

Gimple

./mach-io.c.004t.gimple

GKD

./mach-io.o.gkd

OBJ

obj: ./mach-io.o

open_trace_file.c

Gimple

./open_trace_file.c.004t.gimple

GKD

./open_trace_file.o.gkd

OBJ

obj: ./open_trace_file.o

read_alloc.c

Gimple

./read_alloc.c.004t.gimple

GKD

./read_alloc.o.gkd

OBJ

obj: ./read_alloc.o

strings.c

Gimple

./strings.c.004t.gimple

GKD

./strings.o.gkd

OBJ

obj: ./strings.o

traceType.c

Gimple

./traceType.c.004t.gimple

GKD

./traceType.o.gkd

OBJ

obj: ./traceType.o

xalloc.c

Gimple

./xalloc.c.004t.gimple

GKD

./xalloc.o.gkd

OBJ

obj: ./xalloc.o

vlen.c

Gimple

./vlen.c.004t.gimple

GKD

./vlen.o.gkd

OBJ

obj: ./vlen.o

hash_table.c

Gimple

./hash_table.c.004t.gimple

GKD

./hash_table.o.gkd

OBJ

obj: ./hash_table.o

jenkins_lookup3.c

Gimple

./jenkins_lookup3.c.004t.gimple

GKD

./jenkins_lookup3.o.gkd

OBJ

obj: ./jenkins_lookup3.o

mFILE.c

Gimple

./mFILE.c.004t.gimple

GKD

./mFILE.o.gkd

OBJ

obj: ./mFILE.o

pooled_alloc.c

Gimple

./pooled_alloc.c.004t.gimple

GKD

./pooled_alloc.o.gkd

OBJ

obj: ./pooled_alloc.o

bam.c

Gimple

./bam.c.004t.gimple

GKD

./bam.o.gkd

OBJ

obj: ./bam.o

sam_header.c

Gimple

./sam_header.c.004t.gimple

GKD

./sam_header.o.gkd

OBJ

obj: ./sam_header.o

arith_static.c

Gimple

./arith_static.c.004t.gimple

GKD

./arith_static.o.gkd

OBJ

obj: ./arith_static.o

rANS_static.c

Gimple

./rANS_static.c.004t.gimple

GKD

./rANS_static.o.gkd

OBJ

obj: ./rANS_static.o

cram_codecs.c

Gimple

./cram_codecs.c.004t.gimple

GKD

./cram_codecs.o.gkd

OBJ

obj: ./cram_codecs.o

cram_encode.c

Gimple

./cram_encode.c.004t.gimple

GKD

./cram_encode.o.gkd

OBJ

obj: ./cram_encode.o

cram_decode.c

Gimple

./cram_decode.c.004t.gimple

GKD

./cram_decode.o.gkd

OBJ

obj: ./cram_decode.o

cram_stats.c

Gimple

./cram_stats.c.004t.gimple

GKD

./cram_stats.o.gkd

OBJ

obj: ./cram_stats.o

cram_io.c

Gimple

./cram_io.c.004t.gimple

GKD

./cram_io.o.gkd

OBJ

obj: ./cram_io.o

cram_index.c

Gimple

./cram_index.c.004t.gimple

GKD

./cram_index.o.gkd

OBJ

obj: ./cram_index.o

zfio.c

Gimple

./zfio.c.004t.gimple

GKD

./zfio.o.gkd

OBJ

obj: ./zfio.o

dstring.c

Gimple

./dstring.c.004t.gimple

GKD

./dstring.o.gkd

OBJ

obj: ./dstring.o

string_alloc.c

Gimple

./string_alloc.c.004t.gimple

GKD

./string_alloc.o.gkd

OBJ

obj: ./string_alloc.o

md5.c

Gimple

./md5.c.004t.gimple

GKD

./md5.o.gkd

OBJ

obj: ./md5.o

scram.c

Gimple

./scram.c.004t.gimple

GKD

./scram.o.gkd

OBJ

obj: ./scram.o

thread_pool.c

Gimple

./thread_pool.c.004t.gimple

GKD

./thread_pool.o.gkd

OBJ

obj: ./thread_pool.o

includes

Read.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/scf.h ../headers/../io_lib/Read.h ../headers/../io_lib/array.h ../headers/../io_lib/expFileIO.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers/../io_lib/translate.h ../headers/../io_lib/compress.h ../headers/../io_lib/traceType.h ../headers/../io_lib/sff.h ../headers//usr/include/string.h ../headers/../io_lib/xalloc.h ../headers/../io_lib/misc.h ../headers/../io_lib/open_trace_file.h

scf_extras.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/os.h ../headers/../io_lib/scf.h ../headers/../io_lib/array.h ../headers/../io_lib/expFileIO.h ../headers/../io_lib/Read.h ../headers/../io_lib/open_trace_file.h ../headers/../io_lib/xalloc.h ../headers/../io_lib/traceType.h

translate.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/os.h ../headers/../io_lib/scf.h ../headers/../io_lib/Read.h ../headers/../io_lib/array.h ../headers/../io_lib/expFileIO.h ../headers//usr/include/string.h ../headers/../io_lib/xalloc.h ../headers//usr/include/x86_64-linux-gnu/bits/string2.h ../headers/../io_lib/traceType.h ../headers/../io_lib/open_trace_file.h

compression.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ../headers/../io_lib/os.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers/../io_lib/xalloc.h ../headers//usr/include/stdlib.h ../headers//usr/include/string.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h ../headers//usr/include/assert.h

ztr.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/stdint.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers/../io_lib/xalloc.h ../headers//usr/include/stdlib.h ../headers/../io_lib/Read.h ../headers//usr/include/string.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h ../headers/../io_lib/compression.h

ztr_translate.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers/../io_lib/os.h ../headers/../io_lib/Read.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers//usr/include/stdio.h ../headers/../io_lib/xalloc.h ../headers//usr/include/string.h

deflate_interlaced.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/stdlib.h ../headers/../io_lib/deflate_interlaced.h ../headers//usr/include/ctype.h

fpoint.c

seqIOABI.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/os.h ../headers/../io_lib/Read.h ../headers/../io_lib/mach-io.h ../headers//usr/include/string.h ../headers/../io_lib/xalloc.h ../headers//usr/include/ctype.h

seqIOALF.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/os.h ../headers/../io_lib/Read.h ../headers/../io_lib/mach-io.h ../headers//usr/include/string.h ../headers/../io_lib/xalloc.h

expFileIO.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/array.h ../headers/../io_lib/os.h ../headers/../io_lib/expFileIO.h ../headers//usr/include/string.h ../headers/../io_lib/xalloc.h ../headers//usr/include/ctype.h ../headers//usr/include/x86_64-linux-gnu/bits/string2.h ../headers/../io_lib/misc.h

seqIOPlain.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/Read.h ../headers//usr/include/string.h ../headers/../io_lib/xalloc.h ../headers//usr/include/ctype.h

misc_scf.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/os.h ../headers/../io_lib/scf.h ../headers//usr/include/x86_64-linux-gnu/bits/string2.h ../headers//usr/include/stdlib.h ../headers/../io_lib/xalloc.h ../headers/../io_lib/mach-io.h

read_scf.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/scf.h ../headers/../io_lib/mach-io.h ../headers/../io_lib/xalloc.h ../headers/../io_lib/Read.h ../headers/../io_lib/compress.h

write_scf.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/os.h ../headers/../io_lib/scf.h ../headers/../io_lib/mach-io.h ../headers/../io_lib/xalloc.h

sff.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/stdint.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/Read.h ../headers/../io_lib/sff.h ../headers/../io_lib/xalloc.h ../headers//usr/include/string.h ../headers//usr/include/stdlib.h

srf.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h ../headers//usr/include/stdint.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/array.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/srf.h ../headers//usr/include/stdlib.h ../headers//usr/include/string.h ../headers//usr/include/assert.h ../headers/../io_lib/xalloc.h

array.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers/../io_lib/array.h ../headers//usr/include/stdio.h ../headers/../io_lib/xalloc.h

compress.c

../headers//usr/include/x86_64-linux-gnu/bits/unistd.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/time.h ../headers//usr/include/x86_64-linux-gnu/sys/select.h ../headers//usr/include/stdint.h ../headers/../io_lib/mFILE.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ../headers//usr/include/x86_64-linux-gnu/bits/select2.h ../headers//usr/include/stdlib.h ../headers//usr/include/unistd.h ../headers//usr/include/fcntl.h ../headers//usr/include/x86_64-linux-gnu/sys/wait.h ../headers//usr/include/string.h

error.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h

files.c

../headers//usr/include/x86_64-linux-gnu/sys/stat.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/time.h ../headers//usr/include/x86_64-linux-gnu/bits/stat.h

find.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/include/string.h ../headers//usr/include/stdlib.h

mach-io.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/mFILE.h ../headers//usr/include/stdint.h ../headers/../io_lib/os.h

open_trace_file.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/unistd.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/time.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/unistd.h ../headers//usr/include/stdint.h ../headers/../io_lib/os.h ../headers//usr/include/x86_64-linux-gnu/bits/sockaddr.h ../headers//usr/include/x86_64-linux-gnu/bits/socket.h ../headers//usr/include/netinet/in.h ../headers//usr/include/ctype.h ../headers//usr/include/netdb.h ../headers//usr/local/include/curl/curl.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/tar_format.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers/../io_lib/srf.h ../headers//usr/include/x86_64-linux-gnu/bits/socket_type.h ../headers/../io_lib/xalloc.h ../headers//usr/include/string.h ../headers/../io_lib/misc.h ../headers//usr/local/include/curl/easy.h ../headers//usr/include/x86_64-linux-gnu/sys/socket.h ../headers//usr/include/x86_64-linux-gnu/bits/errno.h

read_alloc.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers/../io_lib/os.h ../headers/../io_lib/Read.h ../headers//usr/include/stdio.h ../headers/../io_lib/xalloc.h ../headers//usr/include/string.h ../headers//usr/include/x86_64-linux-gnu/bits/string2.h ../headers//usr/include/assert.h

strings.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/include/ctype.h ../headers//usr/include/string.h

traceType.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/mFILE.h ../headers//usr/include/unistd.h ../headers//usr/include/string.h ../headers/../io_lib/open_trace_file.h ../headers//usr/include/ctype.h

xalloc.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/include/stdlib.h ../headers/../io_lib/error.h

vlen.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h ../headers//usr/include/stdio.h ../headers//usr/include/string.h ../headers//usr/include/stdlib.h

hash_table.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdint.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers//usr/include/stdlib.h ../headers/../io_lib/jenkins_lookup3.h ../headers//usr/include/string.h

jenkins_lookup3.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers//usr/include/stdint.h ../headers//usr/include/stdio.h

mFILE.c

../headers//usr/include/x86_64-linux-gnu/sys/stat.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h ../headers//usr/include/time.h ../headers//usr/include/x86_64-linux-gnu/bits/stat.h ../headers/../io_lib/mFILE.h ../headers//usr/include/stdlib.h ../headers//usr/include/unistd.h ../headers/../io_lib/vlen.h ../headers//usr/include/x86_64-linux-gnu/bits/errno.h

pooled_alloc.c

../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers/../io_lib/pooled_alloc.h ../headers//usr/include/stdio.h ../headers//usr/include/stdlib.h

bam.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/stdint.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/dstring.h ../headers/../io_lib/string_alloc.h ../headers/../io_lib/sam_header.h ../headers/../io_lib/thread_pool.h ../headers/../io_lib/bam.h ../headers/../io_lib/binning.h ../headers//usr/include/stdlib.h ../headers//usr/include/string.h ../headers//usr/include/assert.h ../headers//usr/include/ctype.h ../headers/../io_lib/os.h

sam_header.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h ../headers//usr/include/stdint.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/dstring.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/string_alloc.h ../headers/../io_lib/sam_header.h ../headers//usr/include/string.h

arith_static.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/stdint.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/include/stdlib.h ../headers//usr/include/assert.h

rANS_static.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/stdint.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/include/assert.h ../headers//usr/include/stdlib.h

cram_codecs.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdlib.h ../headers//usr/include/stdint.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/cram_structs.h ../headers/../io_lib/cram_codecs.h ../headers/../io_lib/binning.h ../headers/../io_lib/cram_io.h ../headers//usr/include/string.h ../headers//usr/include/assert.h ../headers/../io_lib/os.h

cram_encode.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/stdint.h ../headers/../io_lib/dstring.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/string_alloc.h ../headers/../io_lib/sam_header.h ../headers/../io_lib/thread_pool.h ../headers/../io_lib/bam.h ../headers/../io_lib/binning.h ../headers/../io_lib/cram_structs.h ../headers/../io_lib/cram_codecs.h ../headers/../io_lib/md5.h ../headers//usr/include/stdlib.h ../headers/../io_lib/cram_stats.h ../headers//usr/include/assert.h ../headers/../io_lib/cram_io.h ../headers//usr/include/pthread.h ../headers/../io_lib/os.h

cram_decode.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/stdint.h ../headers/../io_lib/dstring.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/string_alloc.h ../headers/../io_lib/sam_header.h ../headers/../io_lib/thread_pool.h ../headers/../io_lib/bam.h ../headers/../io_lib/binning.h ../headers/../io_lib/cram_structs.h ../headers/../io_lib/cram_codecs.h ../headers/../io_lib/md5.h ../headers/../io_lib/cram_io.h ../headers//usr/include/stdlib.h ../headers//usr/include/string.h ../headers//usr/include/pthread.h ../headers//usr/include/assert.h ../headers/../io_lib/cram_index.h ../headers/../io_lib/os.h

cram_stats.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/stdint.h ../headers/../io_lib/dstring.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/string_alloc.h ../headers/../io_lib/sam_header.h ../headers/../io_lib/thread_pool.h ../headers/../io_lib/bam.h ../headers/../io_lib/cram_structs.h ../headers/../io_lib/binning.h ../headers/../io_lib/cram_codecs.h ../headers//usr/include/stdlib.h ../headers//usr/include/assert.h

cram_io.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/sys/stat.h ../headers//usr/include/x86_64-linux-gnu/bits/unistd.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/time.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stat.h ../headers//usr/include/stdint.h ../headers/../io_lib/dstring.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/string_alloc.h ../headers/../io_lib/sam_header.h ../headers/../io_lib/thread_pool.h ../headers/../io_lib/bam.h ../headers/../io_lib/cram_structs.h ../headers/../io_lib/binning.h ../headers/../io_lib/cram_codecs.h ../headers/../io_lib/md5.h ../headers/../io_lib/mFILE.h ../headers//usr/include/stdlib.h ../headers//usr/include/string.h ../headers/../io_lib/cram_encode.h ../headers//usr/include/assert.h ../headers/../io_lib/arith_static.h ../headers/../io_lib/rANS_static.h ../headers//usr/include/unistd.h ../headers//usr/include/x86_64-linux-gnu/bits/errno.h ../headers//usr/include/pthread.h ../headers//usr/include/ctype.h ../headers/../io_lib/misc.h ../headers/../io_lib/open_trace_file.h ../headers/../io_lib/cram_stats.h ../headers/../io_lib/cram_decode.h ../headers//usr/include/x86_64-linux-gnu/bits/string2.h ../headers/../io_lib/cram_index.h ../headers/../io_lib/os.h

cram_index.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/zlib.h ../headers//usr/include/stdint.h ../headers/../io_lib/dstring.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/string_alloc.h ../headers/../io_lib/sam_header.h ../headers/../io_lib/thread_pool.h ../headers/../io_lib/bam.h ../headers/../io_lib/cram_structs.h ../headers/../io_lib/binning.h ../headers/../io_lib/cram_codecs.h ../headers/../io_lib/zfio.h ../headers//usr/include/stdlib.h ../headers/../io_lib/cram_io.h ../headers/../io_lib/cram_decode.h ../headers//usr/include/assert.h ../headers//usr/include/string.h

zfio.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/zlib.h ../headers/../io_lib/zfio.h ../headers//usr/include/stdlib.h

dstring.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h ../headers//usr/include/libio.h ../headers/../io_lib/dstring.h ../headers//usr/include/stdio.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h ../headers//usr/include/string.h ../headers/../io_lib/vlen.h ../headers//usr/include/ctype.h ../headers//usr/include/x86_64-linux-gnu/bits/errno.h ../headers/../io_lib/os.h

string_alloc.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/libio.h ./string_alloc.h ../headers//usr/include/stdio.h ../headers//usr/include/stdlib.h ../headers//usr/include/string.h

md5.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ./md5.h

scram.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdint.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h ../headers//usr/include/zlib.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/dstring.h ../headers/../io_lib/string_alloc.h ../headers/../io_lib/sam_header.h ../headers/../io_lib/thread_pool.h ../headers/../io_lib/bam.h ../headers/../io_lib/binning.h ../headers/../io_lib/cram_structs.h ../headers/../io_lib/cram_codecs.h ../headers/../io_lib/scram.h ../headers//usr/include/stdlib.h ../headers/../io_lib/cram_io.h ../headers//usr/include/assert.h ../headers/../io_lib/cram_decode.h ../headers/../io_lib/cram_encode.h

thread_pool.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/time.h ../headers//usr/include/x86_64-linux-gnu/bits/time.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/time.h ../headers/../io_lib/thread_pool.h ../headers//usr/include/stdio.h ../headers//usr/include/pthread.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/sigthread.h ../headers//usr/include/x86_64-linux-gnu/bits/errno.h

srf_info.c

Gimple

./srf_info.c.004t.gimple

GKD

./srf_info.o.gkd

OBJ

obj: ./srf_info.o

includes

srf_info.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdint.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/srf.h ../headers//usr/include/getopt.h ../headers//usr/include/string.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/string2.h ../headers/../io_lib/xalloc.h

scf_info.c

Gimple

./scf_info.c.004t.gimple

GKD

./scf_info.o.gkd

OBJ

obj: ./scf_info.o

includes

scf_info.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/os.h ../headers/../io_lib/scf.h

scram_merge.c

Gimple

./scram_merge.c.004t.gimple

GKD

./scram_merge.o.gkd

OBJ

obj: ./scram_merge.o

includes

scram_merge.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/stdint.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/dstring.h ../headers/../io_lib/string_alloc.h ../headers/../io_lib/sam_header.h ../headers/../io_lib/thread_pool.h ../headers/../io_lib/bam.h ../headers/../io_lib/cram_structs.h ../headers/../io_lib/binning.h ../headers/../io_lib/cram_codecs.h ../headers/../io_lib/scram.h ../headers//usr/include/getopt.h ../headers//usr/include/string.h ../headers/../io_lib/cram_io.h

convert_trace.c

Gimple

./convert_trace.c.004t.gimple

GKD

./convert_trace.o.gkd

OBJ

obj: ./convert_trace.o

includes

convert_trace.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/Read.h ../headers//usr/include/x86_64-linux-gnu/bits/string2.h ../headers/../io_lib/compress.h ../headers//usr/include/unistd.h ../headers//usr/include/fcntl.h ../headers/../io_lib/open_trace_file.h ../headers/../io_lib/seqIOABI.h ../headers/../io_lib/traceType.h

append_sff.c

Gimple

./append_sff.c.004t.gimple

GKD

./append_sff.o.gkd

OBJ

obj: ./append_sff.o

includes

append_sff.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/stdint.h ../headers/../io_lib/sff.h ../headers//usr/include/stdlib.h

hash_tar.c

Gimple

./hash_tar.c.004t.gimple

GKD

./hash_tar.o.gkd

OBJ

obj: ./hash_tar.o

includes

hash_tar.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers/../io_lib/tar_format.h ../headers//usr/include/stdint.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers//usr/include/x86_64-linux-gnu/bits/string2.h ../headers//usr/include/string.h ../headers//usr/include/stdlib.h ../headers//usr/include/ctype.h

hash_exp.c

Gimple

./hash_exp.c.004t.gimple

GKD

./hash_exp.o.gkd

OBJ

obj: ./hash_exp.o

includes

hash_exp.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdint.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers//usr/include/stdlib.h

srf_list.c

Gimple

./srf_list.c.004t.gimple

GKD

./srf_list.o.gkd

OBJ

obj: ./srf_list.o

includes

srf_list.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdint.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers/../io_lib/srf.h ../headers//usr/include/getopt.h ../headers//usr/include/stdlib.h

scf_update.c

Gimple

./scf_update.c.004t.gimple

GKD

./scf_update.o.gkd

OBJ

obj: ./scf_update.o

includes

scf_update.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/os.h ../headers/../io_lib/scf.h

scf_dump.c

Gimple

./scf_dump.c.004t.gimple

GKD

./scf_dump.o.gkd

OBJ

obj: ./scf_dump.o

includes

scf_dump.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/os.h ../headers/../io_lib/scf.h

scram_pileup.c

Gimple

./scram_pileup.c.004t.gimple

GKD

./scram_pileup.o.gkd

OBJ

obj: ./scram_pileup.o

includes

scram_pileup.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h ../headers//usr/include/stdint.h ../headers//usr/include/x86_64-linux-gnu/zconf.h ../headers//usr/include/zlib.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/dstring.h ../headers/../io_lib/string_alloc.h ../headers/../io_lib/sam_header.h ../headers/../io_lib/thread_pool.h ../headers/../io_lib/bam.h ../headers/../io_lib/binning.h ../headers/../io_lib/cram_structs.h ../headers/../io_lib/cram_codecs.h ../headers/../io_lib/scram.h ./scram_pileup.h ../headers//usr/include/stdlib.h ../headers//usr/include/string.h ../headers//usr/include/ctype.h ../headers/../io_lib/os.h

hash_extract.c

Gimple

./hash_extract.c.004t.gimple

GKD

./hash_extract.o.gkd

OBJ

obj: ./hash_extract.o

includes

hash_extract.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdint.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers//usr/include/stdlib.h

srf_extract_linear.c

Gimple

./srf_extract_linear.c.004t.gimple

GKD

./srf_extract_linear.o.gkd

OBJ

obj: ./srf_extract_linear.o

includes

srf_extract_linear.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/stdint.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers/../io_lib/srf.h ../headers//usr/include/stdlib.h

srf2fasta.c

Gimple

./srf2fasta.c.004t.gimple

GKD

./srf2fasta.o.gkd

OBJ

obj: ./srf2fasta.o

includes

srf2fasta.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/stdint.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers/../io_lib/srf.h ../headers//usr/include/stdlib.h ../headers/../io_lib/Read.h

extract_seq.c

Gimple

./extract_seq.c.004t.gimple

GKD

./extract_seq.o.gkd

OBJ

obj: ./extract_seq.o

includes

extract_seq.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/Read.h ../headers/../io_lib/array.h ../headers/../io_lib/expFileIO.h ../headers//usr/include/string.h ../headers/../io_lib/compress.h

srf_extract_hash.c

Gimple

./srf_extract_hash.c.004t.gimple

GKD

./srf_extract_hash.o.gkd

OBJ

obj: ./srf_extract_hash.o

includes

srf_extract_hash.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdint.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers/../io_lib/srf.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h ../headers//usr/include/stdlib.h ../headers/../io_lib/Read.h

get_comment.c

Gimple

./get_comment.c.004t.gimple

GKD

./get_comment.o.gkd

OBJ

obj: ./get_comment.o

includes

get_comment.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/os.h ../headers/../io_lib/Read.h ../headers//usr/include/stdlib.h ../headers//usr/include/string.h

srf2fastq.c

Gimple

./srf2fastq.c.004t.gimple

GKD

./srf2fastq.o.gkd

OBJ

obj: ./srf2fastq.o

includes

srf2fastq.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/stdint.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/srf.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h ../headers//usr/include/string.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/string2.h ../headers/../io_lib/Read.h

srf2fasta.c

Gimple

./srf2fasta.c.004t.gimple

GKD

./srf2fasta.o.gkd

OBJ

obj: ./srf2fasta.o

includes

srf2fasta.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/stdint.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers/../io_lib/srf.h ../headers//usr/include/stdlib.h ../headers/../io_lib/Read.h

ztr_dump.c

Gimple

./ztr_dump.c.004t.gimple

GKD

./ztr_dump.o.gkd

OBJ

obj: ./ztr_dump.o

includes

ztr_dump.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers/../io_lib/compression.h ../headers/../io_lib/xalloc.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h

srf_filter.c

Gimple

./srf_filter.c.004t.gimple

GKD

./srf_filter.o.gkd

OBJ

obj: ./srf_filter.o

includes

srf_filter.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/stdlib.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdint.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/srf.h ../headers//usr/include/getopt.h ../headers//usr/include/string.h ../headers/../io_lib/xalloc.h ../headers//usr/include/x86_64-linux-gnu/bits/errno.h

trace_dump.c

Gimple

./trace_dump.c.004t.gimple

GKD

./trace_dump.o.gkd

OBJ

obj: ./trace_dump.o

includes

trace_dump.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/os.h ../headers/../io_lib/Read.h

srf_dump_all.c

Gimple

./srf_dump_all.c.004t.gimple

GKD

./srf_dump_all.o.gkd

OBJ

obj: ./srf_dump_all.o

includes

srf_dump_all.c

../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdint.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/Read.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers/../io_lib/srf.h ../headers//usr/include/getopt.h ../headers//usr/include/string.h ../headers//usr/include/x86_64-linux-gnu/sys/stat.h ../headers//usr/include/unistd.h ../headers//usr/include/ctype.h

hash_sff.c

Gimple

./hash_sff.c.004t.gimple

GKD

./hash_sff.o.gkd

OBJ

obj: ./hash_sff.o

includes

hash_sff.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdint.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/sff.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/string2.h

srf2fastq.c

Gimple

./srf2fastq.c.004t.gimple

GKD

./srf2fastq.o.gkd

OBJ

obj: ./srf2fastq.o

includes

srf2fastq.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/stdint.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers/../io_lib/pooled_alloc.h ../headers/../io_lib/hash_table.h ../headers/../io_lib/srf.h ../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h ../headers//usr/include/string.h ../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/string2.h ../headers/../io_lib/Read.h

srf_dump_all.c

Gimple

./srf_dump_all.c.004t.gimple

GKD

./srf_dump_all.o.gkd

OBJ

obj: ./srf_dump_all.o

includes

srf_dump_all.c

../headers//usr/include/stdlib.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/include/x86_64-linux-gnu/sys/types.h ../headers//usr/include/stdint.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/Read.h ../headers/../io_lib/deflate_interlaced.h ../headers/../io_lib/ztr.h ../headers/../io_lib/srf.h ../headers//usr/include/getopt.h ../headers//usr/include/string.h ../headers//usr/include/x86_64-linux-gnu/sys/stat.h ../headers//usr/include/unistd.h ../headers//usr/include/ctype.h

extract_fastq.c

Gimple

./extract_fastq.c.004t.gimple

GKD

./extract_fastq.o.gkd

OBJ

obj: ./extract_fastq.o

includes

extract_fastq.c

../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/Read.h ../headers//usr/include/string.h ../headers/../io_lib/open_trace_file.h ../headers//usr/include/stdlib.h

makeSCF.c

Gimple

./makeSCF.c.004t.gimple

GKD

./makeSCF.o.gkd

OBJ

obj: ./makeSCF.o

includes

makeSCF.c

../headers//usr/include/x86_64-linux-gnu/bits/string3.h ../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h ../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h ../headers//usr/include/x86_64-linux-gnu/bits/types.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers/../io_lib/os.h ../headers/../io_lib/mFILE.h ../headers/../io_lib/scf.h ../headers/../io_lib/Read.h ../headers//usr/include/string.h ../headers/../io_lib/xalloc.h ../headers/../io_lib/traceType.h ../headers/../io_lib/compress.h ../headers//usr/include/stdlib.h