libbpp-seq-omics-dev - ppc64el

includes

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Fastq.cpp

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MafParser.cpp

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SequenceStreamToMafIterator.cpp

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MafIterator.cpp

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SequenceFilterMafIterator.cpp

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OrphanSequenceFilterMafIterator.cpp

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ChromosomeMafIterator.cpp

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DuplicateFilterMafIterator.cpp

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BlockMergerMafIterator.cpp

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ConcatenateMafIterator.cpp

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FullGapFilterMafIterator.cpp

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AlignmentFilterMafIterator.cpp

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EntropyFilterMafIterator.cpp

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MaskFilterMafIterator.cpp

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QualityFilterMafIterator.cpp

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FeatureFilterMafIterator.cpp

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FeatureExtractorMafIterator.cpp

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OutputMafIterator.cpp

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OutputAlignmentMafIterator.cpp

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VcfOutputMafIterator.cpp

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SequenceStatisticsMafIterator.cpp

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WindowSplitMafIterator.cpp

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MafSequence.cpp

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MafStatistics.cpp

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IterationListener.cpp

SequenceFeature.cpp

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SequenceFeatureTools.cpp

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GffFeatureReader.cpp

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GtfFeatureReader.cpp

includes

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../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Fastq.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h

Fastq.cpp

../headers//usr/include/Bpp/Seq/SequenceWithQuality.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/ostream_insert.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Seq/Io/ISequenceStream.h ../headers//usr/include/Bpp/Seq/Io/OSequenceStream.h ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Io/IoFormat.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Io/IoSequenceStream.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h

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../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafIterator.h ../headers//usr/include/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotationTools.h ../headers//usr/include/c++/4.9/bits/stl_bvector.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/Bpp/Seq/SequenceWithQuality.h ../headers//usr/include/c++/4.9/istream ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafParser.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_deque.h ../headers//usr/include/c++/4.9/bits/deque.tcc ../headers//usr/include/Bpp/Text/StringTokenizer.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_pair.h

MafParser.cpp

../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/bits/istream.tcc ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/sstream.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/bits/ostream_insert.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/Bpp/Numeric/ParameterList.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Seq/SymbolListTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Parameter.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/Bpp/Text/KeyvalTools.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/ctype.h ../headers//usr/include/powerpc64le-linux-gnu/bits/mathcalls.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafIterator.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/istream ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_deque.h ../headers//usr/include/c++/4.9/bits/deque.tcc ../headers//usr/include/Bpp/Text/StringTokenizer.h

SequenceStreamToMafIterator.cpp

../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/bits/istream.tcc ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/sstream.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/bits/ostream_insert.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/Bpp/Numeric/ParameterList.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//usr/include/Bpp/Seq/Io/ISequenceStream.h ../headers//usr/include/Bpp/Seq/Io/IoSequenceStream.h ../headers//usr/include/Bpp/Io/IoFormat.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Seq/SymbolListTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Parameter.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/powerpc64le-linux-gnu/bits/mathcalls.h

unassigned

../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafIterator.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/IterationListener.h

MafIterator.cpp

../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/Bpp/Numeric/ParameterList.h ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafSequence.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Parameter.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafIterator.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/Bpp/Text/TextTools.h

SequenceFilterMafIterator.cpp

../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/Bpp/Numeric/ParameterList.h ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Parameter.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafIterator.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_pair.h

OrphanSequenceFilterMafIterator.cpp

../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/Bpp/Numeric/ParameterList.h ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Parameter.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafIterator.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/c++/4.9/bits/stl_map.h

ChromosomeMafIterator.cpp

../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/Bpp/Numeric/ParameterList.h ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Parameter.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafIterator.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h ../headers//usr/include/c++/4.9/bits/stl_pair.h

DuplicateFilterMafIterator.cpp

../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/Bpp/Numeric/ParameterList.h ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Parameter.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafIterator.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainerExceptions.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_heap.h ../headers//usr/include/Bpp/Numeric/VectorTools.h

BlockMergerMafIterator.cpp

../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/bits/ostream_insert.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/Bpp/Numeric/ParameterList.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Seq/SymbolListTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Parameter.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/powerpc64le-linux-gnu/bits/mathcalls.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafIterator.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainerExceptions.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_heap.h ../headers//usr/include/Bpp/Numeric/VectorTools.h

ConcatenateMafIterator.cpp

../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/bits/ostream_insert.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/Bpp/Numeric/ParameterList.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Seq/SymbolListTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Parameter.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/powerpc64le-linux-gnu/bits/mathcalls.h

unassigned

../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafIterator.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/Bpp/Seq/Container/VectorSiteContainer.h ../headers//usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h

FullGapFilterMafIterator.cpp

../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/Bpp/Numeric/ParameterList.h ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//usr/include/Bpp/Seq/SiteTools.h ../headers//usr/include/Bpp/Seq/SymbolListTools.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/App/ApplicationTools.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Parameter.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafIterator.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainerExceptions.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h ../headers//usr/include/c++/4.9/bits/stl_deque.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/deque.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_bvector.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/Bpp/Text/TextTools.h

AlignmentFilterMafIterator.cpp

../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/ostream_insert.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/Bpp/Numeric/ParameterList.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Seq/SymbolListTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/App/ApplicationTools.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Parameter.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/powerpc64le-linux-gnu/bits/mathcalls.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafIterator.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainerExceptions.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/stl_deque.h ../headers//usr/include/c++/4.9/bits/deque.tcc ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/Bpp/Numeric/VectorTools.h

EntropyFilterMafIterator.cpp

../headers//usr/include/c++/4.9/bits/stl_numeric.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/ostream_insert.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/Bpp/Numeric/ParameterList.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Seq/SymbolListTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/App/ApplicationTools.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Parameter.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/powerpc64le-linux-gnu/bits/mathcalls.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafIterator.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotationTools.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainerExceptions.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_bvector.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_deque.h ../headers//usr/include/c++/4.9/bits/deque.tcc ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_pair.h

MaskFilterMafIterator.cpp

../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/bits/ostream_insert.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/Bpp/Numeric/ParameterList.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Seq/SymbolListTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/App/ApplicationTools.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Parameter.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/powerpc64le-linux-gnu/bits/mathcalls.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafIterator.h ../headers//usr/include/Bpp/Seq/SequenceWithQuality.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainerExceptions.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_deque.h ../headers//usr/include/c++/4.9/bits/deque.tcc ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_pair.h

QualityFilterMafIterator.cpp

../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/bits/ostream_insert.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/Bpp/Numeric/ParameterList.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Seq/SymbolListTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/App/ApplicationTools.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Parameter.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/powerpc64le-linux-gnu/bits/mathcalls.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafIterator.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainerExceptions.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/stl_deque.h ../headers//usr/include/c++/4.9/bits/deque.tcc ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/bits/stl_heap.h

FeatureFilterMafIterator.cpp

../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/ostream_insert.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/Bpp/Numeric/ParameterList.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Seq/SymbolListTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/App/ApplicationTools.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Parameter.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/powerpc64le-linux-gnu/bits/mathcalls.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafIterator.h ../headers//usr/include/Bpp/Seq/SequenceWalker.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainerExceptions.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/stl_deque.h ../headers//usr/include/c++/4.9/bits/deque.tcc ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/Bpp/Text/TextTools.h

FeatureExtractorMafIterator.cpp

../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/ostream_insert.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/Bpp/Numeric/ParameterList.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Seq/SymbolListTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/App/ApplicationTools.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Parameter.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/powerpc64le-linux-gnu/bits/mathcalls.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/char_traits.h

OutputMafIterator.cpp

../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafBlock.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/c++/4.9/bits/stl_bvector.h ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/ostream_insert.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/SequenceWithQuality.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/OutputMafIterator.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafIterator.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotationTools.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/ctype.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafIterator.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf

OutputAlignmentMafIterator.cpp

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unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainerExceptions.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h

VcfOutputMafIterator.cpp

../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/Bpp/Seq/Container/VectorSiteContainer.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/iostream ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafBlock.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/Bpp/Seq/SymbolListTools.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/ostream_insert.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//usr/include/Bpp/Seq/SiteTools.h ../headers//usr/include/Bpp/Seq/SequenceWithQuality.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafIterator.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafIterator.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafStatistics.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h

SequenceStatisticsMafIterator.cpp

../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/Bpp/Numeric/ParameterList.h ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafSequence.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Parameter.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafIterator.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h ../headers//usr/include/c++/4.9/bits/stl_deque.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/deque.tcc

WindowSplitMafIterator.cpp

../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/ostream_insert.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/Bpp/Numeric/ParameterList.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Seq/SymbolListTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Parameter.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/powerpc64le-linux-gnu/bits/mathcalls.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h

MafSequence.cpp

../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/ostream_insert.h ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Seq/SymbolListTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafStatistics.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h

MafStatistics.cpp

../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/Bpp/Utils/MapTools.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//usr/include/Bpp/Seq/SiteTools.h ../headers//usr/include/Bpp/Seq/SymbolListTools.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainerTools.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/IterationListener.h

IterationListener.cpp

../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainerExceptions.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafBlock.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Io/Maf/../../Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h

SequenceFeature.cpp

../headers//usr/include/c++/4.9/iostream ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Feature/SequenceFeature.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/c++/4.9/new

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Feature/SequenceFeature.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/Bpp/Seq/Alphabet/WordAlphabet.h ../headers//usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/Bpp/Seq/Alphabet/StandardCodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc

SequenceFeatureTools.cpp

../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetTools.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Feature/SequenceFeatureTools.h ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Seq/Alphabet/DefaultAlphabet.h ../headers//usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Seq/SymbolListTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Feature/Gff/../SequenceFeature.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Feature/Gff/GffFeatureReader.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/Bpp/Text/StringTokenizer.h ../headers//usr/include/c++/4.9/bits/stl_deque.h ../headers//usr/include/c++/4.9/bits/deque.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h

GffFeatureReader.cpp

../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/istream ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/ostream.tcc ../headers//usr/include/c++/4.9/bits/istream.tcc ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/sstream.tcc ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/c++/4.9/bits/ostream_insert.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Feature/Gff/../FeatureReader.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Text/KeyvalTools.h ../headers//usr/include/_G_config.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdio.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Feature/Gtf/../SequenceFeature.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/Bpp/Text/StringTokenizer.h ../headers//usr/include/c++/4.9/bits/stl_deque.h ../headers//usr/include/c++/4.9/bits/deque.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h

GtfFeatureReader.cpp

../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/istream ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/istream.tcc ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/basic_ios.tcc ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/sstream.tcc ../headers//usr/include/c++/4.9/bits/functexcept.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/powerpc64le-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/powerpc64le-linux-gnu/bits/types.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-float.h ../headers//usr/include/powerpc64le-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-omics-2.1.0/src/Bpp/Seq/Feature/Gtf/../FeatureReader.h ../headers//usr/include/powerpc64le-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/c++/4.9/new

includes