libbpp-seq9 - mipsel

includes

unassigned

DNAToRNA.cpp

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NucleicAcidsReplication.cpp

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Sequence.cpp

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SequenceWithAnnotation.cpp

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SequenceWithAnnotationTools.cpp

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SequenceWithQuality.cpp

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SequenceExceptions.cpp

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SequencePositionIterators.cpp

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SequenceTools.cpp

unassigned

SequenceWithQualityTools.cpp

unassigned

SequenceWalker.cpp

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Site.cpp

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SiteExceptions.cpp

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SiteTools.cpp

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StringSequenceTools.cpp

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SymbolList.cpp

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SymbolListTools.cpp

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Transliterator.cpp

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DistanceMatrix.cpp

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CodonSiteTools.cpp

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AbstractAlphabet.cpp

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AlphabetExceptions.cpp

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AlphabetTools.cpp

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CodonAlphabet.cpp

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DefaultAlphabet.cpp

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CaseMaskedAlphabet.cpp

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DNA.cpp

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ProteicAlphabet.cpp

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RNA.cpp

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StandardCodonAlphabet.cpp

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VertebrateMitochondrialCodonAlphabet.cpp

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InvertebrateMitochondrialCodonAlphabet.cpp

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EchinodermMitochondrialCodonAlphabet.cpp

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YeastMitochondrialCodonAlphabet.cpp

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WordAlphabet.cpp

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RNY.cpp

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BinaryAlphabet.cpp

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GeneticCode.cpp

unassigned

StandardGeneticCode.cpp

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VertebrateMitochondrialGeneticCode.cpp

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InvertebrateMitochondrialGeneticCode.cpp

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EchinodermMitochondrialGeneticCode.cpp

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YeastMitochondrialGeneticCode.cpp

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GranthamAAChemicalDistance.cpp

__GranthamMatrixCode

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MiyataAAChemicalDistance.cpp

__MiyataMatrixCode

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BLOSUM50.cpp

__BLOSUM50MatrixCode

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DefaultNucleotideScore.cpp

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AAIndex1Entry.cpp

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AAIndex2Entry.cpp

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SimpleScore.cpp

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AbstractSequenceContainer.cpp

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AlignedSequenceContainer.cpp

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MapSequenceContainer.cpp

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SequenceContainerTools.cpp

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SiteContainerExceptions.cpp

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SiteContainerTools.cpp

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VectorSequenceContainer.cpp

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VectorSiteContainer.cpp

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CompressedVectorSiteContainer.cpp

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SiteContainerIterator.cpp

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SequenceContainerIterator.cpp

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Clustal.cpp

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Dcse.cpp

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Fasta.cpp

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Mase.cpp

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MaseTools.cpp

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Phylip.cpp

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IoSequenceFactory.cpp

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GenBank.cpp

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PhredPhd.cpp

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PhredPoly.cpp

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NexusIoSequence.cpp

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NexusTools.cpp

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Stockholm.cpp

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StreamSequenceIterator.cpp

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BppOSequenceReaderFormat.cpp

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BppOSequenceWriterFormat.cpp

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BppOAlignmentReaderFormat.cpp

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BppOAlignmentWriterFormat.cpp

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BppOSequenceStreamReaderFormat.cpp

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BppOAlphabetIndex1Format.cpp

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BppOAlphabetIndex2Format.cpp

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SequenceApplicationTools.cpp

includes

unassigned

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/DNAToRNA.h

DNAToRNA.cpp

../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Transliterator.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/NucleicAcidsReplication.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h

NucleicAcidsReplication.cpp

../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Transliterator.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Sequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Sequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/ext/atomicity.h

Sequence.cpp

../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SequenceWithAnnotation.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/ext/atomicity.h

SequenceWithAnnotation.cpp

../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Sequence.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SequenceWithAnnotationTools.h ../headers//usr/include/c++/4.9/bits/stl_bvector.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h

SequenceWithAnnotationTools.cpp

../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SequenceWithAnnotation.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SequenceWithQuality.h ../headers//usr/include/c++/4.9/ext/new_allocator.h

SequenceWithQuality.cpp

../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SequenceWithAnnotation.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SequenceExceptions.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/char_traits.h

SequenceExceptions.cpp

../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Sequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SymbolList.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SequencePositionIterators.h

SequencePositionIterators.cpp

../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SequenceExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Sequence.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/Bpp/Numeric/NumTools.h

SequenceTools.cpp

../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/RNY.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/DNA.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/RNA.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/NucleicAcidsReplication.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Transliterator.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetTools.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/c++/4.9/cmath ../headers//usr/include/Bpp/Numeric/Random/RandomTools.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/bits/stl_list.h ../headers//usr/include/c++/4.9/bits/list.tcc ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/DefaultAlphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SymbolListTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/Numeric/Random/RandomFactory.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SymbolList.h ../headers//usr/include/Bpp/Numeric/VectorExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SequenceWithAnnotation.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SequenceWithQuality.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Sequence.h

SequenceWithQualityTools.cpp

../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/DNA.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/RNA.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/NucleicAcidsReplication.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Transliterator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SequenceWithQualityTools.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h

SequenceWalker.cpp

../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SequenceWalker.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Sequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SymbolList.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Site.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/ext/new_allocator.h

Site.cpp

../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SiteExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Site.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h

SiteExceptions.cpp

../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/Bpp/Numeric/VectorExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SiteExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h

SiteTools.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/Bpp/Utils/MapTools.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SymbolListTools.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/c++/4.9/cmath ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SiteTools.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Site.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SequenceExceptions.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h

StringSequenceTools.cpp

../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/StringSequenceTools.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/../Sequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/wctype.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/ext/new_allocator.h

SymbolList.cpp

../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//usr/include/Bpp/Numeric/VectorExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h

SymbolListTools.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetTools.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/DefaultAlphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SymbolListTools.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h

Transliterator.cpp

../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Transliterator.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h

DistanceMatrix.cpp

../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/DistanceMatrix.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SiteExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Site.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/GeneticCode.h ../headers//usr/include/Bpp/Numeric/VectorExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/WordAlphabet.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/char_traits.h

CodonSiteTools.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetTools.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/SymbolListTools.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/typeinfo ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/DefaultAlphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/CodonSiteTools.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/../Sequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Transliterator.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h

AbstractAlphabet.cpp

../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/Bpp/Utils/MapTools.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/wctype.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/c++/4.9/new

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h

AlphabetExceptions.cpp

../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/DefaultAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h

AlphabetTools.cpp

../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/RNA.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/DNA.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetTools.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/WordAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h

CodonAlphabet.cpp

../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/DefaultAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h

DefaultAlphabet.cpp

../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h

CaseMaskedAlphabet.cpp

../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/c++/4.9/new

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/DNA.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabetState.h

DNA.cpp

../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/c++/4.9/new

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/ProteicAlphabetState.h

ProteicAlphabet.cpp

../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/Bpp/Utils/MapTools.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/c++/4.9/new

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/RNA.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabetState.h

RNA.cpp

../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/c++/4.9/new

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/WordAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/StandardCodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h

StandardCodonAlphabet.cpp

../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/WordAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/VertebrateMitochondrialCodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h

VertebrateMitochondrialCodonAlphabet.cpp

../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/WordAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/InvertebrateMitochondrialCodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h

InvertebrateMitochondrialCodonAlphabet.cpp

../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/WordAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/EchinodermMitochondrialCodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h

EchinodermMitochondrialCodonAlphabet.cpp

../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/WordAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/YeastMitochondrialCodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h

YeastMitochondrialCodonAlphabet.cpp

../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/WordAlphabet.h

WordAlphabet.cpp

../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/../Sequence.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/RNY.h

RNY.cpp

../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/wctype.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h ../headers//usr/include/c++/4.9/new

unassigned

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/BinaryAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/bits/char_traits.h

BinaryAlphabet.cpp

../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/wctype.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/GeneticCode.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/CodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/WordAlphabet.h

GeneticCode.cpp

../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/AlphabetTools.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/DefaultAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Sequence.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Transliterator.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/NucleicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/NucleicAlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/WordAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/ProteicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/GeneticCode.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/CodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h

StandardGeneticCode.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/StandardCodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Transliterator.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/NucleicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Sequence.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/NucleicAlphabetState.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/WordAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/ProteicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/GeneticCode.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/CodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h

VertebrateMitochondrialGeneticCode.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/VertebrateMitochondrialCodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Transliterator.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/NucleicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Sequence.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/NucleicAlphabetState.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/WordAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/ProteicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/GeneticCode.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/CodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h

InvertebrateMitochondrialGeneticCode.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/InvertebrateMitochondrialCodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Transliterator.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/NucleicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Sequence.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/NucleicAlphabetState.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/WordAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/ProteicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/GeneticCode.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/CodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h

EchinodermMitochondrialGeneticCode.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/EchinodermMitochondrialCodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Transliterator.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/NucleicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Sequence.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/NucleicAlphabetState.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/AbstractAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/WordAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/ProteicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/GeneticCode.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/CodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h

YeastMitochondrialGeneticCode.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/YeastMitochondrialCodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Transliterator.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/NucleicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Sequence.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/GeneticCode/../Alphabet/NucleicAlphabetState.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/ext/new_allocator.h

GranthamAAChemicalDistance.cpp

../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator.h

__GranthamMatrixCode

../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/NucleicAlphabetState.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/wctype.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/Bpp/Numeric/NumTools.h

MiyataAAChemicalDistance.cpp

../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator.h

__MiyataMatrixCode

../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/NucleicAlphabetState.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/wctype.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/Bpp/Numeric/NumTools.h

BLOSUM50.cpp

../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator.h

__BLOSUM50MatrixCode

../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/NucleicAlphabetState.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/wctype.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/AbstractAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/NucleicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/Bpp/Numeric/NumTools.h

DefaultNucleotideScore.cpp

../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/NucleicAlphabetState.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/wctype.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/Bpp/Text/StringTokenizer.h ../headers//usr/include/c++/4.9/bits/stl_deque.h ../headers//usr/include/c++/4.9/bits/deque.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h

AAIndex1Entry.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/NucleicAlphabetState.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/Bpp/Text/StringTokenizer.h ../headers//usr/include/c++/4.9/bits/stl_deque.h ../headers//usr/include/c++/4.9/bits/deque.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator.h

AAIndex2Entry.cpp

../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/NucleicAlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/wctype.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/SimpleScore.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/Bpp/Numeric/NumTools.h

SimpleScore.cpp

../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/Alphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetState.h ../headers//usr/include/wctype.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h

AbstractSequenceContainer.cpp

../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Sequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/AlphabetState.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../SiteExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Site.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../SequenceExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h ../headers//usr/include/c++/4.9/ext/new_allocator.h

AlignedSequenceContainer.cpp

../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/AlphabetExceptions.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SiteContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Sequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/AlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/MapSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SequenceContainerExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Sequence.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h

MapSequenceContainer.cpp

../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/AlphabetExceptions.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../SymbolList.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/Alphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/AlphabetState.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/CodonAlphabet.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Sequence.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../SymbolList.h

SequenceContainerTools.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/WordAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/NucleicAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/NucleicAlphabetState.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SequenceContainerTools.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h

SiteContainerExceptions.cpp

../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SiteContainerExceptions.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Site.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../SequenceExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../DistanceMatrix.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/AbstractAlphabet.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Sequence.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SiteContainer.h

SiteContainerTools.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SiteContainerIterator.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/AlphabetTools.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_deque.h ../headers//usr/include/c++/4.9/bits/deque.tcc ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/Alphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/DefaultAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/LetterAlphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/NucleicAlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../SiteIterator.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SiteContainerTools.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../AlphabetIndex/AlphabetIndex2.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/CodonAlphabet.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/VectorSequenceContainer.h ../headers//usr/include/c++/4.9/bits/stl_vector.h

VectorSequenceContainer.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SequenceContainerExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Sequence.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/AlphabetExceptions.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../SymbolList.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/AlphabetState.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../SiteExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Site.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../SequenceExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/VectorSiteContainer.h

VectorSiteContainer.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SequenceContainerExceptions.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Sequence.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SiteContainer.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/AlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../SiteExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Site.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h

CompressedVectorSiteContainer.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SequenceContainerExceptions.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Sequence.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SiteContainer.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/AlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SiteContainerIterator.h

SiteContainerIterator.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../SiteIterator.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SiteContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Site.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Sequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/AlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h

unassigned

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SequenceContainerIterator.h

SequenceContainerIterator.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../SequenceIterator.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Sequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../SequenceWithQuality.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Container/../Alphabet/AlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/AbstractSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/VectorSequenceContainer.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Clustal.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractIAlignment.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractOAlignment.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/istream ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Sequence.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/OrderedSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SiteContainer.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h

Clustal.cpp

../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Site.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/ISequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Alphabet/Alphabet.h ../headers//usr/include/Bpp/Io/IoFormat.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/OSequence.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Alphabet/AlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/AbstractSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Dcse.h

Dcse.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractIAlignment.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/istream ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Sequence.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/VectorSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/OrderedSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SiteContainer.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Site.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/ISequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Alphabet/Alphabet.h ../headers//usr/include/Bpp/Io/IoFormat.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Alphabet/AlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/AbstractSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Fasta.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractOSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractIAlignment.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractISequence.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/OrderedSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/VectorSequenceContainer.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/istream ../headers//usr/include/Bpp/Text/StringTokenizer.h ../headers//usr/include/c++/4.9/bits/stl_deque.h ../headers//usr/include/c++/4.9/bits/deque.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h

Fasta.cpp

../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Sequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SiteContainer.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Site.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/SequenceFileIndex.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/ISequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/OSequenceStream.h ../headers//usr/include/Bpp/Io/IoFormat.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/OSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/ISequence.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/AlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/AbstractSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Mase.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractOSequence.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractIAlignment.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractISequence.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/OrderedSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/VectorSequenceContainer.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/istream ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Sequence.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SiteContainer.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/bits/stl_deque.h ../headers//usr/include/c++/4.9/bits/deque.tcc ../headers//usr/include/Bpp/Text/StringTokenizer.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h

Mase.cpp

../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/Bpp/Utils/MapTools.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/bits/stl_heap.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Site.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/Alphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Io/IoFormat.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/OSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/ISequence.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/AlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/AbstractSequenceContainer.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/Bpp/Text/StringTokenizer.h ../headers//usr/include/c++/4.9/bits/stl_deque.h ../headers//usr/include/c++/4.9/bits/deque.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_tree.h

MaseTools.cpp

../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/istream ../headers//usr/include/Bpp/Text/TextTools.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/OrderedSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/VectorSequenceContainer.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Sequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Site.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/MaseTools.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SiteContainerTools.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SequenceContainerTools.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SiteContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Alphabet/Alphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Alphabet/AlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/AbstractSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/VectorSequenceContainer.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractIAlignment.h

Phylip.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Phylip.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequence.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractOAlignment.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/istream ../headers//usr/include/Bpp/Text/StringTokenizer.h ../headers//usr/include/c++/4.9/bits/stl_deque.h ../headers//usr/include/c++/4.9/bits/deque.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Sequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/OrderedSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SiteContainer.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Site.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/ISequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Alphabet/Alphabet.h ../headers//usr/include/Bpp/Io/IoFormat.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/OSequence.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Alphabet/AlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequenceFactory.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/char_traits.h

IoSequenceFactory.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/ISequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Fasta.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/OSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/ISequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/OSequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractISequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractIAlignment.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractOSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Clustal.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractOAlignment.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Phylip.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Mase.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Dcse.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/NexusIoSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/GenBank.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/istream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Sequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Site.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SiteContainer.h ../headers//usr/include/Bpp/Io/IoFormat.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/AbstractSequenceContainer.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/AbstractSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/GenBank.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractISequence.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/OrderedSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/VectorSequenceContainer.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/istream ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/Bpp/Text/StringTokenizer.h ../headers//usr/include/c++/4.9/bits/stl_deque.h ../headers//usr/include/c++/4.9/bits/deque.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h

GenBank.cpp

../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Sequence.h ../headers//usr/include/Bpp/Io/IoFormat.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/ISequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/Alphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/AlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/Bpp/Numeric/VectorExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/PhredPhd.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../SequenceWithAnnotation.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/Bpp/Text/StringTokenizer.h ../headers//usr/include/c++/4.9/bits/stl_deque.h ../headers//usr/include/c++/4.9/bits/deque.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h

PhredPhd.cpp

../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/Bpp/Text/TextTools.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../SequenceWithQuality.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/ISequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Sequence.h ../headers//usr/include/Bpp/Io/IoFormat.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/Alphabet.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/AlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/PhredPoly.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/Bpp/Text/StringTokenizer.h ../headers//usr/include/c++/4.9/bits/stl_deque.h ../headers//usr/include/c++/4.9/bits/deque.tcc ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h

PhredPoly.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/ISequenceStream.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Sequence.h ../headers//usr/include/Bpp/Io/IoFormat.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/AlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/AbstractSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/NexusIoSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractIAlignment.h

NexusIoSequence.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequence.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/istream ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Sequence.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/VectorSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/OrderedSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SiteContainer.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Site.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/ISequence.h ../headers//usr/include/Bpp/Io/IoFormat.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/NucleicAlphabetState.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h

NexusTools.cpp

../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/libio.h ../headers//usr/include/stdio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/time.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/NexusTools.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/AbstractSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/VectorSequenceContainer.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Stockholm.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequence.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractOAlignment.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/ios_base.h

Stockholm.cpp

../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Sequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Site.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SiteContainer.h ../headers//usr/include/Bpp/Io/IoFormat.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/OSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Alphabet/AlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../SymbolList.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../SequenceWithAnnotation.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../SequenceWithQuality.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/StreamSequenceIterator.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Sequence.h ../headers//usr/include/c++/4.9/bits/stl_construct.h

StreamSequenceIterator.cpp

../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../SequenceIterator.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/ISequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequenceStream.h ../headers//usr/include/Bpp/Io/IoFormat.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/AlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/Bpp/App/ApplicationTools.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/istream ../headers//usr/include/Bpp/Text/TextTools.h

BppOSequenceReaderFormat.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/ISequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Mase.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/OSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractISequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractIAlignment.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractOSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Phylip.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractOAlignment.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Fasta.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/ISequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/OSequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Clustal.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/GenBank.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Dcse.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/NexusIoSequence.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Sequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Site.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Io/IoFormat.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SiteContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/BppOSequenceReaderFormat.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/AbstractSequenceContainer.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/Bpp/App/ApplicationTools.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/istream ../headers//usr/include/Bpp/Text/TextTools.h

BppOSequenceWriterFormat.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/ISequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Fasta.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/OSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/ISequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/OSequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractISequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractIAlignment.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractOSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Mase.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Sequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Site.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Io/IoFormat.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SiteContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/BppOSequenceWriterFormat.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/AbstractSequenceContainer.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/Bpp/App/ApplicationTools.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/istream ../headers//usr/include/Bpp/Text/TextTools.h

BppOAlignmentReaderFormat.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Mase.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/ISequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/OSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractISequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractIAlignment.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractOSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Phylip.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractOAlignment.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Fasta.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/ISequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/OSequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Clustal.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/NexusIoSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Dcse.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Sequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Site.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Io/IoFormat.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SiteContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/AbstractSequenceContainer.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/Bpp/App/ApplicationTools.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/istream ../headers//usr/include/Bpp/Text/TextTools.h

BppOAlignmentWriterFormat.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Fasta.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/ISequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/OSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/ISequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/OSequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractISequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractIAlignment.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractOSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Mase.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Phylip.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractOAlignment.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Clustal.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Stockholm.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Sequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Site.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SiteContainer.h ../headers//usr/include/Bpp/Io/IoFormat.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/AbstractSequenceContainer.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/ext/new_allocator.h

BppOSequenceStreamReaderFormat.cpp

../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/ISequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/Fasta.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/OSequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/ISequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/IoSequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/OSequenceStream.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractISequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractIAlignment.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/AbstractOSequence.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/istream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Sequence.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/../Site.h ../headers//usr/include/Bpp/Io/IoFormat.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/SiteContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/Alphabet.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../SymbolList.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Container/AbstractSequenceContainer.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../AlphabetIndex/../Alphabet/AlphabetExceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../AlphabetIndex/GranthamAAPolarityIndex.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../AlphabetIndex/GranthamAAVolumeIndex.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../AlphabetIndex/KleinAANetChargeIndex.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../AlphabetIndex/AAChouFasmanAHelixIndex.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../AlphabetIndex/AAChouFasmanBSheetIndex.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../AlphabetIndex/AAChouFasmanTurnIndex.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../AlphabetIndex/AASurfaceIndex.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../AlphabetIndex/AAMassIndex.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../AlphabetIndex/AAVolumeIndex.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../AlphabetIndex/AAChargeIndex.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../AlphabetIndex/AASEAInf10Index.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../AlphabetIndex/AASEA1030Index.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../AlphabetIndex/AASEASup30Index.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/LetterAlphabet.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/bits/char_traits.h

BppOAlphabetIndex1Format.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/AlphabetTools.h ../headers//usr/include/Bpp/App/ApplicationTools.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/Bpp/Text/TextTools.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/istream ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/fstream ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/wctype.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../AlphabetIndex/../Alphabet/AlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../AlphabetIndex/../Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../AlphabetIndex/AAIndex1Entry.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../AlphabetIndex/AlphabetIndex1.h ../headers//usr/include/Bpp/Clonable.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/DefaultAlphabet.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../Alphabet/NucleicAlphabetState.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h ../headers//usr/include/Bpp/Io/IoFormat.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/../AlphabetIndex/SimpleIndexDistance.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/c++/4.9/bits/char_traits.h

BppOAlphabetIndex2Format.cpp

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unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/App/../Container/AbstractSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/App/../Container/VectorSiteContainer.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/App/../Io/BppOSequenceReaderFormat.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/App/../Io/BppOAlignmentReaderFormat.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/App/../Io/BppOSequenceWriterFormat.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/App/../Io/BppOAlignmentWriterFormat.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/App/../Io/BppOAlphabetIndex1Format.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/App/../Io/BppOAlphabetIndex2Format.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h

SequenceApplicationTools.cpp

../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/App/../Container/SiteContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/App/../Container/OrderedSequenceContainer.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/App/../Container/SequenceContainer.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/sstream ../headers//usr/include/c++/4.9/streambuf ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_funcs.h ../headers//usr/include/Bpp/App/ApplicationTools.h ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/Bpp/Text/TextTools.h ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/App/../Alphabet/AlphabetTools.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/istream ../headers//work/libbpp-seq-2.1.0/src/Bpp/Seq/App/../SymbolListTools.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd 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