libbpp-phyl9 - mipsel

Documentation

Binaries

CMakeDetermineCompilerABI_CXX.bin

compile units

includes

libraries


manual

libbpp-phyl.so.9.1.3

compile units

unassigned
PhylogeneticsApplicationTools.cpp
unassigned
BipartitionList.cpp
unassigned
BipartitionTools.cpp
unassigned
AbstractAgglomerativeDistanceMethod.cpp
unassigned
BioNJ.cpp
unassigned
DistanceEstimation.cpp
unassigned
NeighborJoining.cpp
unassigned
PGMA.cpp
unassigned
HierarchicalClustering.cpp
unassigned
AbstractDendrogramPlot.cpp
unassigned
AbstractTreeDrawing.cpp
unassigned
CladogramPlot.cpp
unassigned
PhylogramPlot.cpp
unassigned
TreeDrawingDisplayControler.cpp
unassigned
TreeDrawingListener.cpp
unassigned
IoDistanceMatrixFactory.cpp
unassigned
IoTreeFactory.cpp
unassigned
Newick.cpp
unassigned
NexusIoTree.cpp
unassigned
Nhx.cpp
unassigned
PhylipDistanceMatrixFormat.cpp
unassigned
IoPairedSiteLikelihoods.cpp
unassigned
IoSubstitutionModelFactory.cpp
unassigned
BppOSubstitutionModelFormat.cpp
unassigned
IoFrequenciesSetFactory.cpp
unassigned
BppOFrequenciesSetFormat.cpp
unassigned
BppORateDistributionFormat.cpp
unassigned
AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp
unassigned
AbstractHomogeneousTreeLikelihood.cpp
unassigned
AbstractNonHomogeneousTreeLikelihood.cpp
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AbstractTreeLikelihood.cpp
unassigned
DRASDRTreeLikelihoodData.cpp
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DRASRTreeLikelihoodData.cpp
unassigned
DRHomogeneousMixedTreeLikelihood.cpp
unassigned
DRHomogeneousTreeLikelihood.cpp
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DRNonHomogeneousTreeLikelihood.cpp
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DRTreeLikelihoodTools.cpp
unassigned
MarginalAncestralStateReconstruction.cpp
unassigned
NNIHomogeneousTreeLikelihood.cpp
unassigned
PseudoNewtonOptimizer.cpp
unassigned
RASTools.cpp
unassigned
RHomogeneousClockTreeLikelihood.cpp
unassigned
RHomogeneousMixedTreeLikelihood.cpp
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RHomogeneousTreeLikelihood.cpp
unassigned
RNonHomogeneousMixedTreeLikelihood.cpp
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RNonHomogeneousTreeLikelihood.cpp
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TreeLikelihoodTools.cpp
unassigned
PairedSiteLikelihoods.cpp
unassigned
GlobalClockTreeLikelihoodFunctionWrapper.cpp
unassigned
LaplaceSubstitutionCount.cpp
unassigned
OneJumpSubstitutionCount.cpp
unassigned
ProbabilisticSubstitutionMapping.cpp
unassigned
NaiveSubstitutionCount.cpp
unassigned
DecompositionSubstitutionCount.cpp
unassigned
UniformizationSubstitutionCount.cpp
unassigned
WeightedSubstitutionCount.cpp
unassigned
SubstitutionMappingTools.cpp
unassigned
StateMap.cpp
unassigned
BinarySubstitutionModel.cpp
unassigned
AbstractSubstitutionModel.cpp
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AbstractBiblioSubstitutionModel.cpp
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AbstractBiblioMixedSubstitutionModel.cpp
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MarkovModulatedSubstitutionModel.cpp
unassigned
AbstractMixedSubstitutionModel.cpp
unassigned
MixtureOfASubstitutionModel.cpp
unassigned
MixtureOfSubstitutionModels.cpp
unassigned
RateDistributionFactory.cpp
unassigned
RE08.cpp
unassigned
SubstitutionModelFactory.cpp
unassigned
SubstitutionModelSet.cpp
unassigned
MixedSubstitutionModelSet.cpp
unassigned
SubstitutionModelSetTools.cpp
unassigned
AbstractWordSubstitutionModel.cpp
unassigned
WordSubstitutionModel.cpp
unassigned
F84.cpp
unassigned
HKY85.cpp
unassigned
JCnuc.cpp
unassigned
GTR.cpp
unassigned
K80.cpp
unassigned
L95.cpp
unassigned
RN95.cpp
unassigned
RN95s.cpp
unassigned
SSR.cpp
unassigned
T92.cpp
unassigned
TN93.cpp
unassigned
gBGC.cpp
unassigned
YpR.cpp
unassigned
DSO78.cpp
__DSO78ExchangeabilityCode
__DSO78FrequenciesCode
unassigned
UserProteinSubstitutionModel.cpp
unassigned
JCprot.cpp
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JTT92.cpp
__JTT92ExchangeabilityCode
__JTT92FrequenciesCode
unassigned
LG08.cpp
__LG08ExchangeabilityCode
__LG08FrequenciesCode
unassigned
WAG01.cpp
__WAG01ExchangeabilityCode
__WAG01FrequenciesCode
unassigned
LLG08_EHO.cpp
__LLG08_EHOExchangeabilityCode
__LLG08_EHOFrequenciesCode
__LLG08_EHORatesProps
unassigned
LLG08_EX2.cpp
__LLG08_EX2ExchangeabilityCode
__LLG08_EX2FrequenciesCode
__LLG08_EX2RatesProps
unassigned
LLG08_EX3.cpp
__LLG08_EX3ExchangeabilityCode
__LLG08_EX3FrequenciesCode
__LLG08_EX3RatesProps
unassigned
LLG08_UL2.cpp
__LLG08_UL2ExchangeabilityCode
__LLG08_UL2FrequenciesCode
__LLG08_UL2RatesProps
unassigned
LLG08_UL3.cpp
__LLG08_UL3ExchangeabilityCode
__LLG08_UL3FrequenciesCode
__LLG08_UL3RatesProps
unassigned
LGL08_CAT.cpp
__CATC60FrequenciesCode
__CATC60RatesProps
__CATC50FrequenciesCode
__CATC50RatesProps
__CATC10FrequenciesCode
__CATC10RatesProps
__CATC20FrequenciesCode
__CATC20RatesProps
__CATC30FrequenciesCode
__CATC30RatesProps
__CATC40FrequenciesCode
__CATC40RatesProps
unassigned
Coala.cpp
__DSO78ExchangeabilityCode
__JTT92ExchangeabilityCode
__WAG01ExchangeabilityCode
__LG08ExchangeabilityCode
unassigned
CoalaCore.cpp
unassigned
GY94.cpp
unassigned
MG94.cpp
unassigned
TripletSubstitutionModel.cpp
unassigned
AbstractCodonSubstitutionModel.cpp
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AbstractCodonFrequenciesSubstitutionModel.cpp
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AbstractCodonPhaseFrequenciesSubstitutionModel.cpp
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AbstractCodonDistanceSubstitutionModel.cpp
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AbstractCodonFitnessSubstitutionModel.cpp
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CodonDistanceSubstitutionModel.cpp
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CodonDistanceFrequenciesSubstitutionModel.cpp
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CodonDistancePhaseFrequenciesSubstitutionModel.cpp
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CodonDistanceFitnessPhaseFrequenciesSubstitutionModel.cpp
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CodonRateSubstitutionModel.cpp
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CodonRateFrequenciesSubstitutionModel.cpp
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YN98.cpp
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YNGKP_M1.cpp
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YNGKP_M2.cpp
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YNGKP_M3.cpp
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YNGKP_M7.cpp
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YNGKP_M8.cpp
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FrequenciesSet.cpp
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NucleotideFrequenciesSet.cpp
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MvaFrequenciesSet.cpp
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WordFrequenciesSet.cpp
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CodonFrequenciesSet.cpp
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NNITopologySearch.cpp
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Node.cpp
unassigned
OptimizationTools.cpp
unassigned
AbstractTreeParsimonyScore.cpp
unassigned
DRTreeParsimonyData.cpp
unassigned
DRTreeParsimonyScore.cpp
unassigned
PatternTools.cpp
unassigned
PhyloStatistics.cpp
unassigned
MutationProcess.cpp
unassigned
NonHomogeneousSequenceSimulator.cpp
unassigned
SequenceSimulationTools.cpp
unassigned
SitePatterns.cpp
unassigned
TreeExceptions.cpp
unassigned
TreeTemplateTools.cpp
unassigned
TreeTools.cpp

includes

unassigned

PhylogeneticsApplicationTools.cpp

unassigned

BipartitionList.cpp

unassigned

BipartitionTools.cpp

unassigned

AbstractAgglomerativeDistanceMethod.cpp

unassigned

BioNJ.cpp

unassigned

DistanceEstimation.cpp

unassigned

NeighborJoining.cpp

unassigned

PGMA.cpp

unassigned

HierarchicalClustering.cpp

unassigned

AbstractDendrogramPlot.cpp

unassigned

AbstractTreeDrawing.cpp

unassigned

CladogramPlot.cpp

unassigned

PhylogramPlot.cpp

unassigned

TreeDrawingDisplayControler.cpp

unassigned

TreeDrawingListener.cpp

unassigned

IoDistanceMatrixFactory.cpp

unassigned

IoTreeFactory.cpp

unassigned

Newick.cpp

unassigned

NexusIoTree.cpp

unassigned

Nhx.cpp

unassigned

PhylipDistanceMatrixFormat.cpp

unassigned

IoPairedSiteLikelihoods.cpp

unassigned

IoSubstitutionModelFactory.cpp

unassigned

BppOSubstitutionModelFormat.cpp

unassigned

IoFrequenciesSetFactory.cpp

unassigned

BppOFrequenciesSetFormat.cpp

unassigned

BppORateDistributionFormat.cpp

unassigned

AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp

unassigned

AbstractHomogeneousTreeLikelihood.cpp

unassigned

AbstractNonHomogeneousTreeLikelihood.cpp

unassigned

AbstractTreeLikelihood.cpp

unassigned

DRASDRTreeLikelihoodData.cpp

unassigned

DRASRTreeLikelihoodData.cpp

unassigned

DRHomogeneousMixedTreeLikelihood.cpp

unassigned

DRHomogeneousTreeLikelihood.cpp

unassigned

DRNonHomogeneousTreeLikelihood.cpp

unassigned

DRTreeLikelihoodTools.cpp

unassigned

MarginalAncestralStateReconstruction.cpp

unassigned

NNIHomogeneousTreeLikelihood.cpp

unassigned

PseudoNewtonOptimizer.cpp

unassigned

RASTools.cpp

unassigned

RHomogeneousClockTreeLikelihood.cpp

unassigned

RHomogeneousMixedTreeLikelihood.cpp

unassigned

RHomogeneousTreeLikelihood.cpp

unassigned

RNonHomogeneousMixedTreeLikelihood.cpp

unassigned

RNonHomogeneousTreeLikelihood.cpp

unassigned

TreeLikelihoodTools.cpp

unassigned

PairedSiteLikelihoods.cpp

unassigned

GlobalClockTreeLikelihoodFunctionWrapper.cpp

unassigned

LaplaceSubstitutionCount.cpp

unassigned

OneJumpSubstitutionCount.cpp

unassigned

ProbabilisticSubstitutionMapping.cpp

unassigned

NaiveSubstitutionCount.cpp

unassigned

DecompositionSubstitutionCount.cpp

unassigned

UniformizationSubstitutionCount.cpp

unassigned

WeightedSubstitutionCount.cpp

unassigned

SubstitutionMappingTools.cpp

unassigned

StateMap.cpp

unassigned

BinarySubstitutionModel.cpp

unassigned

AbstractSubstitutionModel.cpp

unassigned

AbstractBiblioSubstitutionModel.cpp

unassigned

AbstractBiblioMixedSubstitutionModel.cpp

unassigned

MarkovModulatedSubstitutionModel.cpp

unassigned

AbstractMixedSubstitutionModel.cpp

unassigned

MixtureOfASubstitutionModel.cpp

unassigned

MixtureOfSubstitutionModels.cpp

unassigned

RateDistributionFactory.cpp

unassigned

RE08.cpp

unassigned

SubstitutionModelFactory.cpp

unassigned

SubstitutionModelSet.cpp

unassigned

MixedSubstitutionModelSet.cpp

unassigned

SubstitutionModelSetTools.cpp

unassigned

AbstractWordSubstitutionModel.cpp

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WordSubstitutionModel.cpp

unassigned

F84.cpp

unassigned

HKY85.cpp

unassigned

JCnuc.cpp

unassigned

GTR.cpp

unassigned

K80.cpp

unassigned

L95.cpp

unassigned

RN95.cpp

unassigned

RN95s.cpp

unassigned

SSR.cpp

unassigned

T92.cpp

unassigned

TN93.cpp

unassigned

gBGC.cpp

unassigned

YpR.cpp

unassigned

DSO78.cpp

__DSO78ExchangeabilityCode

__DSO78FrequenciesCode

unassigned

UserProteinSubstitutionModel.cpp

unassigned

JCprot.cpp

unassigned

JTT92.cpp

__JTT92ExchangeabilityCode

__JTT92FrequenciesCode

unassigned

LG08.cpp

__LG08ExchangeabilityCode

__LG08FrequenciesCode

unassigned

WAG01.cpp

__WAG01ExchangeabilityCode

__WAG01FrequenciesCode

unassigned

LLG08_EHO.cpp

__LLG08_EHOExchangeabilityCode

__LLG08_EHOFrequenciesCode

__LLG08_EHORatesProps

unassigned

LLG08_EX2.cpp

__LLG08_EX2ExchangeabilityCode

__LLG08_EX2FrequenciesCode

__LLG08_EX2RatesProps

unassigned

LLG08_EX3.cpp

__LLG08_EX3ExchangeabilityCode

__LLG08_EX3FrequenciesCode

__LLG08_EX3RatesProps

unassigned

LLG08_UL2.cpp

__LLG08_UL2ExchangeabilityCode

__LLG08_UL2FrequenciesCode

__LLG08_UL2RatesProps

unassigned

LLG08_UL3.cpp

__LLG08_UL3ExchangeabilityCode

__LLG08_UL3FrequenciesCode

__LLG08_UL3RatesProps

unassigned

LGL08_CAT.cpp

__CATC60FrequenciesCode

__CATC60RatesProps

__CATC50FrequenciesCode

__CATC50RatesProps

__CATC10FrequenciesCode

__CATC10RatesProps

__CATC20FrequenciesCode

__CATC20RatesProps

__CATC30FrequenciesCode

__CATC30RatesProps

__CATC40FrequenciesCode

__CATC40RatesProps

unassigned

Coala.cpp

__DSO78ExchangeabilityCode

__JTT92ExchangeabilityCode

__WAG01ExchangeabilityCode

__LG08ExchangeabilityCode

unassigned

CoalaCore.cpp

unassigned

GY94.cpp

unassigned

MG94.cpp

unassigned

TripletSubstitutionModel.cpp

unassigned

AbstractCodonSubstitutionModel.cpp

unassigned

AbstractCodonFrequenciesSubstitutionModel.cpp

unassigned

AbstractCodonPhaseFrequenciesSubstitutionModel.cpp

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AbstractCodonDistanceSubstitutionModel.cpp

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AbstractCodonFitnessSubstitutionModel.cpp

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CodonDistanceSubstitutionModel.cpp

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CodonDistanceFrequenciesSubstitutionModel.cpp

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CodonDistancePhaseFrequenciesSubstitutionModel.cpp

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CodonDistanceFitnessPhaseFrequenciesSubstitutionModel.cpp

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CodonRateSubstitutionModel.cpp

unassigned

CodonRateFrequenciesSubstitutionModel.cpp

unassigned

YN98.cpp

unassigned

YNGKP_M1.cpp

unassigned

YNGKP_M2.cpp

unassigned

YNGKP_M3.cpp

unassigned

YNGKP_M7.cpp

unassigned

YNGKP_M8.cpp

unassigned

FrequenciesSet.cpp

unassigned

NucleotideFrequenciesSet.cpp

unassigned

MvaFrequenciesSet.cpp

unassigned

WordFrequenciesSet.cpp

unassigned

CodonFrequenciesSet.cpp

unassigned

NNITopologySearch.cpp

unassigned

Node.cpp

unassigned

OptimizationTools.cpp

unassigned

AbstractTreeParsimonyScore.cpp

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DRTreeParsimonyData.cpp

unassigned

DRTreeParsimonyScore.cpp

unassigned

PatternTools.cpp

unassigned

PhyloStatistics.cpp

unassigned

MutationProcess.cpp

unassigned

NonHomogeneousSequenceSimulator.cpp

unassigned

SequenceSimulationTools.cpp

unassigned

SitePatterns.cpp

unassigned

TreeExceptions.cpp

unassigned

TreeTemplateTools.cpp

unassigned

TreeTools.cpp

libraries


manual

a.out

compile units

includes

libraries


manual