libbpp-phyl9 - mipsel

Documentation

Binaries

libbpp-phyl.so.9.1.3

compile units

includes

unassigned

PhylogeneticsApplicationTools.cpp

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BipartitionList.cpp

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BipartitionTools.cpp

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AbstractAgglomerativeDistanceMethod.cpp

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BioNJ.cpp

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DistanceEstimation.cpp

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NeighborJoining.cpp

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PGMA.cpp

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HierarchicalClustering.cpp

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AbstractDendrogramPlot.cpp

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AbstractTreeDrawing.cpp

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CladogramPlot.cpp

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PhylogramPlot.cpp

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TreeDrawingDisplayControler.cpp

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TreeDrawingListener.cpp

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IoDistanceMatrixFactory.cpp

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IoTreeFactory.cpp

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Newick.cpp

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NexusIoTree.cpp

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Nhx.cpp

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PhylipDistanceMatrixFormat.cpp

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IoPairedSiteLikelihoods.cpp

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IoSubstitutionModelFactory.cpp

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BppOSubstitutionModelFormat.cpp

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IoFrequenciesSetFactory.cpp

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BppOFrequenciesSetFormat.cpp

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BppORateDistributionFormat.cpp

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AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp

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AbstractHomogeneousTreeLikelihood.cpp

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AbstractNonHomogeneousTreeLikelihood.cpp

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AbstractTreeLikelihood.cpp

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DRASDRTreeLikelihoodData.cpp

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DRASRTreeLikelihoodData.cpp

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DRHomogeneousMixedTreeLikelihood.cpp

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DRHomogeneousTreeLikelihood.cpp

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DRNonHomogeneousTreeLikelihood.cpp

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DRTreeLikelihoodTools.cpp

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MarginalAncestralStateReconstruction.cpp

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NNIHomogeneousTreeLikelihood.cpp

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PseudoNewtonOptimizer.cpp

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RASTools.cpp

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RHomogeneousClockTreeLikelihood.cpp

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RHomogeneousMixedTreeLikelihood.cpp

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RHomogeneousTreeLikelihood.cpp

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RNonHomogeneousMixedTreeLikelihood.cpp

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RNonHomogeneousTreeLikelihood.cpp

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TreeLikelihoodTools.cpp

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PairedSiteLikelihoods.cpp

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GlobalClockTreeLikelihoodFunctionWrapper.cpp

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LaplaceSubstitutionCount.cpp

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OneJumpSubstitutionCount.cpp

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ProbabilisticSubstitutionMapping.cpp

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NaiveSubstitutionCount.cpp

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DecompositionSubstitutionCount.cpp

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UniformizationSubstitutionCount.cpp

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WeightedSubstitutionCount.cpp

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SubstitutionMappingTools.cpp

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StateMap.cpp

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BinarySubstitutionModel.cpp

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AbstractSubstitutionModel.cpp

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AbstractBiblioSubstitutionModel.cpp

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AbstractBiblioMixedSubstitutionModel.cpp

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MarkovModulatedSubstitutionModel.cpp

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AbstractMixedSubstitutionModel.cpp

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MixtureOfASubstitutionModel.cpp

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MixtureOfSubstitutionModels.cpp

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RateDistributionFactory.cpp

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RE08.cpp

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SubstitutionModelFactory.cpp

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SubstitutionModelSet.cpp

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MixedSubstitutionModelSet.cpp

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SubstitutionModelSetTools.cpp

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AbstractWordSubstitutionModel.cpp

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WordSubstitutionModel.cpp

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F84.cpp

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HKY85.cpp

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JCnuc.cpp

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GTR.cpp

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K80.cpp

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L95.cpp

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RN95.cpp

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RN95s.cpp

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SSR.cpp

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T92.cpp

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TN93.cpp

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gBGC.cpp

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YpR.cpp

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DSO78.cpp

__DSO78ExchangeabilityCode

__DSO78FrequenciesCode

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UserProteinSubstitutionModel.cpp

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JCprot.cpp

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JTT92.cpp

__JTT92ExchangeabilityCode

__JTT92FrequenciesCode

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LG08.cpp

__LG08ExchangeabilityCode

__LG08FrequenciesCode

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WAG01.cpp

__WAG01ExchangeabilityCode

__WAG01FrequenciesCode

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LLG08_EHO.cpp

__LLG08_EHOExchangeabilityCode

__LLG08_EHOFrequenciesCode

__LLG08_EHORatesProps

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LLG08_EX2.cpp

__LLG08_EX2ExchangeabilityCode

__LLG08_EX2FrequenciesCode

__LLG08_EX2RatesProps

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LLG08_EX3.cpp

__LLG08_EX3ExchangeabilityCode

__LLG08_EX3FrequenciesCode

__LLG08_EX3RatesProps

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LLG08_UL2.cpp

__LLG08_UL2ExchangeabilityCode

__LLG08_UL2FrequenciesCode

__LLG08_UL2RatesProps

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LLG08_UL3.cpp

__LLG08_UL3ExchangeabilityCode

__LLG08_UL3FrequenciesCode

__LLG08_UL3RatesProps

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LGL08_CAT.cpp

__CATC60FrequenciesCode

__CATC60RatesProps

__CATC50FrequenciesCode

__CATC50RatesProps

__CATC10FrequenciesCode

__CATC10RatesProps

__CATC20FrequenciesCode

__CATC20RatesProps

__CATC30FrequenciesCode

__CATC30RatesProps

__CATC40FrequenciesCode

__CATC40RatesProps

unassigned

Coala.cpp

__DSO78ExchangeabilityCode

__JTT92ExchangeabilityCode

__WAG01ExchangeabilityCode

__LG08ExchangeabilityCode

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CoalaCore.cpp

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GY94.cpp

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MG94.cpp

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TripletSubstitutionModel.cpp

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AbstractCodonSubstitutionModel.cpp

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AbstractCodonFrequenciesSubstitutionModel.cpp

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AbstractCodonPhaseFrequenciesSubstitutionModel.cpp

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AbstractCodonDistanceSubstitutionModel.cpp

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AbstractCodonFitnessSubstitutionModel.cpp

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CodonDistanceSubstitutionModel.cpp

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CodonDistanceFrequenciesSubstitutionModel.cpp

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CodonDistancePhaseFrequenciesSubstitutionModel.cpp

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CodonDistanceFitnessPhaseFrequenciesSubstitutionModel.cpp

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CodonRateSubstitutionModel.cpp

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CodonRateFrequenciesSubstitutionModel.cpp

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YN98.cpp

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YNGKP_M1.cpp

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YNGKP_M2.cpp

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YNGKP_M3.cpp

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YNGKP_M7.cpp

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YNGKP_M8.cpp

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FrequenciesSet.cpp

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NucleotideFrequenciesSet.cpp

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MvaFrequenciesSet.cpp

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WordFrequenciesSet.cpp

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CodonFrequenciesSet.cpp

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NNITopologySearch.cpp

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Node.cpp

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OptimizationTools.cpp

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AbstractTreeParsimonyScore.cpp

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DRTreeParsimonyData.cpp

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DRTreeParsimonyScore.cpp

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PatternTools.cpp

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PhyloStatistics.cpp

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MutationProcess.cpp

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NonHomogeneousSequenceSimulator.cpp

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SequenceSimulationTools.cpp

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SitePatterns.cpp

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TreeExceptions.cpp

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TreeTemplateTools.cpp

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TreeTools.cpp

libraries


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