libbpp-phyl-omics1 - mipsel

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CountDistanceEstimationMafIterator.cpp

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MaximumLikelihoodDistanceEstimationMafIterator.cpp

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DistanceBasedPhylogenyReconstructionMafIterator.cpp

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TreeManipulationMafIterators.cpp

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OutputTreeMafIterator.cpp

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CountClustersMafStatistics.cpp

includes

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../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/Bpp/Seq/Io/Maf/MafIterator.h

CountDistanceEstimationMafIterator.cpp

../headers//usr/include/Bpp/Seq/Io/Maf/MafBlock.h ../headers//work/libbpp-phyl-omics-2.1.0/src/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//work/libbpp-phyl-omics-2.1.0/src/Bpp/Seq/Io/Maf/AbstractDistanceEstimationMafIterator.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Seq/Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/Bpp/Numeric/Parameter.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/Bpp/Numeric/ParameterList.h ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//usr/include/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/Bpp/Phyl/Node.h ../headers//usr/include/Bpp/Phyl/TreeTemplateTools.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Phyl/Model/SubstitutionModel.h ../headers//usr/include/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h ../headers//usr/include/Bpp/Numeric/Function/Optimizer.h ../headers//usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h ../headers//usr/include/Bpp/Phyl/Tree.h ../headers//usr/include/Bpp/Seq/DistanceMatrix.h ../headers//usr/include/Bpp/Phyl/Distance/DistanceMethod.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Numeric/Function/OptimizationStopCondition.h ../headers//usr/include/Bpp/Phyl/TreeTemplate.h ../headers//usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodData.h ../headers//usr/include/Bpp/Numeric/ParameterAliasable.h ../headers//usr/include/Bpp/BppString.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Phyl/TreeExceptions.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/Bpp/Numeric/Function/AbstractOptimizer.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/Bpp/Seq/Io/Maf/MafIterator.h ../headers//usr/include/Bpp/Seq/DistanceMatrix.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h

MaximumLikelihoodDistanceEstimationMafIterator.cpp

../headers//usr/include/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/Bpp/Phyl/Distance/DistanceEstimation.h ../headers//usr/include/Bpp/Numeric/ParameterList.h ../headers//work/libbpp-phyl-omics-2.1.0/src/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.h ../headers//usr/include/Bpp/Numeric/Function/MetaOptimizer.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//work/libbpp-phyl-omics-2.1.0/src/Bpp/Seq/Io/Maf/AbstractDistanceEstimationMafIterator.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stl_bvector.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/bitset ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Seq/Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/Bpp/Numeric/Parameter.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//usr/include/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/Bpp/Phyl/Node.h ../headers//usr/include/Bpp/Phyl/TreeTemplateTools.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Phyl/Model/SubstitutionModel.h ../headers//usr/include/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h ../headers//usr/include/Bpp/Numeric/Function/Optimizer.h ../headers//usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h ../headers//usr/include/Bpp/Phyl/Tree.h ../headers//usr/include/Bpp/Phyl/TopologySearch.h ../headers//usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h ../headers//usr/include/Bpp/Phyl/TreeTemplate.h ../headers//usr/include/Bpp/Phyl/Model/StateMap.h ../headers//usr/include/Bpp/Phyl/Parsimony/TreeParsimonyData.h ../headers//usr/include/Bpp/Phyl/Distance/DistanceMethod.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Numeric/Function/OptimizationStopCondition.h ../headers//usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodData.h ../headers//usr/include/Bpp/Numeric/VectorExceptions.h ../headers//usr/include/Bpp/Numeric/ParameterAliasable.h ../headers//usr/include/Bpp/BppString.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Phyl/TreeExceptions.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetExceptions.h ../headers//usr/include/Bpp/Numeric/Function/AbstractOptimizer.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/Bpp/Seq/Io/Maf/MafIterator.h ../headers//work/libbpp-phyl-omics-2.1.0/src/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//work/libbpp-phyl-omics-2.1.0/src/Bpp/Seq/Io/Maf/AbstractPhylogenyReconstructionMafIterator.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_tree.h

DistanceBasedPhylogenyReconstructionMafIterator.cpp

../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Seq/Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/Bpp/Numeric/ParameterList.h ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//usr/include/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/Bpp/Phyl/Distance/DistanceMethod.h ../headers//usr/include/Bpp/Phyl/Tree.h ../headers//usr/include/Bpp/Seq/DistanceMatrix.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Parameter.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/Bpp/Seq/Io/Maf/MafIterator.h ../headers//usr/include/Bpp/Phyl/TreeExceptions.h ../headers//usr/include/Bpp/Phyl/Node.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/Bpp/Phyl/TreeTemplate.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/Bpp/Phyl/TreeTemplateTools.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//work/libbpp-phyl-omics-2.1.0/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_pair.h

TreeManipulationMafIterators.cpp

../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/Bpp/Utils/MapTools.h ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Seq/Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/Bpp/Numeric/ParameterList.h ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//usr/include/Bpp/Phyl/Tree.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Seq/DistanceMatrix.h ../headers//usr/include/Bpp/BppString.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Parameter.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_tree.h

OutputTreeMafIterator.cpp

../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/Bpp/Phyl/Io/Newick.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_function.h ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/Bpp/Phyl/Tree.h ../headers//work/libbpp-phyl-omics-2.1.0/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h ../headers//usr/include/Bpp/Seq/Io/Maf/MafIterator.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/Bpp/Seq/Feature/SequenceFeature.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

unassigned

../headers//usr/include/Bpp/Exceptions.h ../headers//usr/include/Bpp/Seq/Io/Maf/MafStatistics.h ../headers//usr/include/Bpp/Phyl/TreeExceptions.h ../headers//usr/include/Bpp/Phyl/Node.h ../headers//usr/include/c++/4.9/bits/stl_vector.h ../headers//usr/include/Bpp/Phyl/TreeTemplate.h ../headers//usr/include/c++/4.9/bits/basic_string.h ../headers//usr/include/c++/4.9/ext/atomicity.h ../headers//usr/include/Bpp/Phyl/TreeTemplateTools.h ../headers//usr/include/c++/4.9/ext/new_allocator.h ../headers//usr/include/c++/4.9/bits/stl_algobase.h ../headers//usr/include/c++/4.9/bits/stl_tree.h ../headers//usr/include/c++/4.9/bits/char_traits.h ../headers//usr/include/c++/4.9/bits/stl_construct.h ../headers//usr/include/c++/4.9/bits/basic_string.tcc ../headers//work/libbpp-phyl-omics-2.1.0/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h ../headers//usr/include/c++/4.9/bits/vector.tcc ../headers//usr/include/c++/4.9/bits/stl_iterator.h ../headers//usr/include/c++/4.9/bits/stl_map.h ../headers//usr/include/c++/4.9/bits/stl_pair.h ../headers//usr/include/c++/4.9/bits/stl_uninitialized.h ../headers//usr/include/Bpp/Utils/MapTools.h ../headers//usr/include/c++/4.9/bits/stl_function.h

CountClustersMafStatistics.cpp

../headers//usr/include/Bpp/Seq/Io/Maf/MafBlock.h ../headers//usr/include/c++/4.9/iostream ../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h ../headers//usr/include/c++/4.9/cwchar ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/c++config.h ../headers//usr/include/c++/4.9/new ../headers//usr/include/c++/4.9/bits/allocator.h ../headers//usr/include/c++/4.9/clocale ../headers//usr/include/c++/4.9/cstdlib ../headers//usr/include/c++/4.9/bits/stringfwd.h ../headers//usr/include/c++/4.9/bits/ios_base.h ../headers//usr/include/c++/4.9/cwctype ../headers//usr/include/c++/4.9/ostream ../headers//usr/include/c++/4.9/bits/locale_facets.h ../headers//usr/include/c++/4.9/iomanip ../headers//usr/include/c++/4.9/bits/stl_set.h ../headers//usr/include/c++/4.9/cstdio ../headers//usr/include/c++/4.9/bits/postypes.h ../headers//usr/include/c++/4.9/backward/auto_ptr.h ../headers//usr/include/c++/4.9/ctime ../headers//usr/include/c++/4.9/bits/cpp_type_traits.h ../headers//usr/include/c++/4.9/exception ../headers//usr/include/c++/4.9/iosfwd ../headers//usr/include/c++/4.9/bits/basic_ios.h ../headers//usr/include/c++/4.9/bits/move.h ../headers//usr/include/c++/4.9/bits/stl_algo.h ../headers//usr/include/c++/4.9/bits/predefined_ops.h ../headers//usr/include/c++/4.9/ext/numeric_traits.h ../headers//usr/include/c++/4.9/ext/alloc_traits.h ../headers//usr/include/c++/4.9/ext/type_traits.h ../headers//usr/include/c++/4.9/debug/debug.h ../headers//usr/include/stdio.h ../headers//usr/include/libio.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stdarg.h ../headers//usr/lib/gcc/mipsel-linux-gnu/4.9/include/stddef.h ../headers//usr/include/wchar.h ../headers//usr/include/time.h ../headers//usr/include/locale.h ../headers//usr/include/mipsel-linux-gnu/bits/types.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/atomic_word.h ../headers//usr/include/stdlib.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-float.h ../headers//usr/include/mipsel-linux-gnu/bits/stdlib-bsearch.h ../headers//usr/include/wctype.h ../headers//usr/include/Bpp/Clonable.h ../headers//usr/include/Bpp/Seq/Feature/SequenceFeature.h ../headers//usr/include/Bpp/Seq/SymbolList.h ../headers//usr/include/Bpp/Seq/Alphabet/AlphabetState.h ../headers//usr/include/Bpp/Seq/Alphabet/Alphabet.h ../headers//usr/include/Bpp/Numeric/NumConstants.h ../headers//usr/include/Bpp/Numeric/NumTools.h ../headers//usr/include/Bpp/Numeric/Function/Functions.h ../headers//usr/include/Bpp/Numeric/Matrix/Matrix.h ../headers//usr/include/Bpp/Numeric/ParameterList.h ../headers//usr/include/Bpp/Seq/Sequence.h ../headers//usr/include/Bpp/Seq/Site.h ../headers//usr/include/Bpp/Seq/Io/Maf/MafSequence.h ../headers//usr/include/Bpp/Phyl/Tree.h ../headers//usr/include/Bpp/Numeric/VectorTools.h ../headers//usr/include/Bpp/Seq/DistanceMatrix.h ../headers//usr/include/Bpp/Seq/Container/SiteContainer.h ../headers//usr/include/Bpp/BppString.h ../headers//usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h ../headers//usr/include/Bpp/Seq/Container/SequenceContainer.h ../headers//usr/include/Bpp/Seq/SequenceWithAnnotation.h ../headers//usr/include/Bpp/Numeric/Range.h ../headers//usr/include/Bpp/Seq/SequenceTools.h ../headers//usr/include/Bpp/Numeric/Stat/StatTest.h ../headers//usr/include/Bpp/Io/OutputStream.h ../headers//usr/include/Bpp/Numeric/Parametrizable.h ../headers//usr/include/Bpp/Numeric/Parameter.h ../headers//usr/include/Bpp/Numeric/Constraints.h ../headers//usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h ../headers//usr/include/_G_config.h ../headers//usr/include/mipsel-linux-gnu/bits/stdio.h ../headers//usr/include/mipsel-linux-gnu/c++/4.9/bits/gthr-default.h

includes

includes