libhts-dev - amd64
Documentation
./doc/copyright
./doc/changelog.Debian.gz
Binaries
bgzip
compile units
bgzip.c
Gimple
./bgzip.c.004t.gimple
GKD
./bgzip.o.gkd
OBJ
obj: ./bgzip.o
bgzf.c
Gimple
./bgzf.c.004t.gimple
GKD
./bgzf.o.gkd
OBJ
obj: ./bgzf.o
hfile.c
Gimple
./hfile.c.004t.gimple
GKD
./hfile.o.gkd
OBJ
obj: ./hfile.o
hfile_net.c
Gimple
./hfile_net.c.004t.gimple
GKD
./hfile_net.o.gkd
OBJ
obj: ./hfile_net.o
hts.c
Gimple
./hts.c.004t.gimple
GKD
./hts.o.gkd
OBJ
obj: ./hts.o
cram_io.c
cram_stats.c
files.c
mFILE.c
md5.c
open_trace_file.c
sam_header.c
string_alloc.c
thread_pool.c
vlen.c
knetfile.c
Gimple
./knetfile.c.004t.gimple
GKD
./knetfile.o.gkd
OBJ
obj: ./knetfile.o
kstring.c
Gimple
./kstring.c.004t.gimple
GKD
./kstring.o.gkd
OBJ
obj: ./kstring.o
sam.c
Gimple
./sam.c.004t.gimple
GKD
./sam.o.gkd
OBJ
obj: ./sam.o
cram_decode.c
cram_encode.c
cram_index.c
cram_samtools.c
pooled_alloc.c
zfio.c
cram_codecs.c
includes
bgzip.c
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/time.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/getopt.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers/htslib/bgzf.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers/htslib/hts.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/unistd.h
bgzf.c
../headers/htslib/hfile.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers/htslib/hts.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdint.h
../headers/htslib/bgzf.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers/htslib/khash.h
../headers//usr/include/stdlib.h
../headers//usr/include/pthread.h
../headers//usr/include/assert.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/string.h
hfile.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/socket2.h
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/time.h
../headers/htslib/hfile.h
./hfile_internal.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/unistd.h
../headers//usr/include/x86_64-linux-gnu/sys/socket.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
hfile_net.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers/htslib/hfile.h
./hfile_internal.h
../headers/htslib/knetfile.h
hts.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers/htslib/hfile.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers/htslib/hts.h
./htslib/khash.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/stdint.h
../headers/htslib/bgzf.h
../headers/cram/cram_structs.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./cram/sam_header.h
./cram/thread_pool.h
../headers/cram/cram_codecs.h
../headers/htslib/ksort.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers/cram/cram_io.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/unistd.h
cram_io.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./cram/cram_structs.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./htslib/khash.h
./htslib/hfile.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
./cram/sam_header.h
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/stdint.h
./htslib/hts.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./cram/thread_pool.h
./cram/cram_codecs.h
./cram/md5.h
./cram/mFILE.h
../headers//usr/include/stdlib.h
./cram/cram_encode.h
../headers//usr/include/assert.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/unistd.h
../headers//usr/include/pthread.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
./cram/misc.h
./cram/open_trace_file.h
./cram/cram_stats.h
./cram/cram_decode.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
./cram/cram_index.h
cram_stats.c
./cram/cram_structs.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdint.h
./htslib/hts.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./htslib/khash.h
./cram/sam_header.h
./cram/thread_pool.h
./cram/cram_codecs.h
../headers//usr/include/stdlib.h
../headers//usr/include/assert.h
files.c
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/stdio.h
mFILE.c
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
./cram/mFILE.h
../headers//usr/include/stdlib.h
../headers//usr/include/unistd.h
./cram/vlen.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
md5.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers/cram/md5.h
open_trace_file.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./htslib/hfile.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./cram/mFILE.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./cram/misc.h
sam_header.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./cram/sam_header.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./htslib/khash.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./htslib/kstring.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
./cram/string_alloc.h
./cram/pooled_alloc.h
../headers//usr/include/stdint.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
string_alloc.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers/cram/string_alloc.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
thread_pool.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/time.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/time.h
./cram/thread_pool.h
../headers//usr/include/stdlib.h
../headers//usr/include/pthread.h
../headers//usr/include/x86_64-linux-gnu/bits/sigthread.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
vlen.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
knetfile.c
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/time.h
../headers//usr/include/x86_64-linux-gnu/sys/select.h
../headers//usr/include/unistd.h
../headers//usr/include/x86_64-linux-gnu/bits/sockaddr.h
../headers//usr/include/x86_64-linux-gnu/bits/socket.h
../headers//usr/include/netdb.h
../headers/htslib/knetfile.h
../headers//usr/include/x86_64-linux-gnu/bits/select2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/sys/socket.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/x86_64-linux-gnu/bits/socket_type.h
kstring.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers/htslib/kstring.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
sam.c
./htslib/kstring.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers/htslib/hts.h
./htslib/khash.h
../headers/htslib/hfile.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers//usr/include/stdint.h
../headers/htslib/bgzf.h
../headers/cram/cram_structs.h
../headers/htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./cram/sam_header.h
./cram/thread_pool.h
../headers/cram/cram_codecs.h
../headers//usr/include/stdlib.h
../headers/cram/cram_decode.h
../headers/cram/cram_io.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/string.h
../headers/cram/cram_index.h
../headers//usr/include/ctype.h
../headers/cram/cram_encode.h
../headers//usr/include/assert.h
cram_decode.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./cram/cram_structs.h
./htslib/khash.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdint.h
./htslib/hts.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./cram/sam_header.h
./cram/thread_pool.h
./cram/cram_codecs.h
./cram/md5.h
../headers//usr/include/stdlib.h
./cram/cram_io.h
../headers//usr/include/string.h
../headers//usr/include/pthread.h
../headers//usr/include/assert.h
cram_encode.c
./cram/sam_header.h
./htslib/khash.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./cram/cram_structs.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdint.h
./htslib/hts.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./cram/thread_pool.h
./cram/cram_codecs.h
./cram/md5.h
../headers//usr/include/stdlib.h
./cram/cram_stats.h
../headers//usr/include/assert.h
./cram/cram_io.h
../headers//usr/include/pthread.h
cram_index.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./htslib/hfile.h
./htslib/kstring.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/zlib.h
../headers//usr/include/stdint.h
./htslib/hts.h
./cram/cram_structs.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./htslib/khash.h
./cram/sam_header.h
./cram/thread_pool.h
./cram/cram_codecs.h
./cram/zfio.h
../headers//usr/include/stdlib.h
./cram/cram_io.h
./cram/cram_decode.h
../headers//usr/include/assert.h
../headers//usr/include/string.h
cram_samtools.c
./htslib/hts.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./htslib/khash.h
../headers//usr/include/libio.h
./cram/sam_header.h
./htslib/kstring.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
./cram/cram_structs.h
pooled_alloc.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./cram/pooled_alloc.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
zfio.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/zlib.h
./cram/zfio.h
../headers//usr/include/stdlib.h
cram_codecs.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdlib.h
../headers//usr/include/stdint.h
./cram/string_alloc.h
./htslib/khash.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./cram/sam_header.h
./cram/cram_structs.h
./cram/cram_codecs.h
./cram/cram_io.h
../headers//usr/include/string.h
../headers//usr/include/assert.h
libraries
../libs/lib/x86_64-linux-gnu/libz.so.1
../libs/lib/x86_64-linux-gnu/libpthread.so.0
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
libhts.so
compile units
kfunc.c
Gimple
./kfunc.c.004t.gimple
GKD
./kfunc.o.gkd
OBJ
obj: ./kfunc.o
knetfile.c
Gimple
./knetfile.c.004t.gimple
GKD
./knetfile.o.gkd
OBJ
obj: ./knetfile.o
kstring.c
Gimple
./kstring.c.004t.gimple
GKD
./kstring.o.gkd
OBJ
obj: ./kstring.o
bgzf.c
Gimple
./bgzf.c.004t.gimple
GKD
./bgzf.o.gkd
OBJ
obj: ./bgzf.o
faidx.c
Gimple
./faidx.c.004t.gimple
GKD
./faidx.o.gkd
OBJ
obj: ./faidx.o
hfile.c
Gimple
./hfile.c.004t.gimple
GKD
./hfile.o.gkd
OBJ
obj: ./hfile.o
hfile_net.c
Gimple
./hfile_net.c.004t.gimple
GKD
./hfile_net.o.gkd
OBJ
obj: ./hfile_net.o
hts.c
Gimple
./hts.c.004t.gimple
GKD
./hts.o.gkd
OBJ
obj: ./hts.o
sam.c
Gimple
./sam.c.004t.gimple
GKD
./sam.o.gkd
OBJ
obj: ./sam.o
synced_bcf_reader.c
Gimple
./synced_bcf_reader.c.004t.gimple
GKD
./synced_bcf_reader.o.gkd
OBJ
obj: ./synced_bcf_reader.o
vcf_sweep.c
Gimple
./vcf_sweep.c.004t.gimple
GKD
./vcf_sweep.o.gkd
OBJ
obj: ./vcf_sweep.o
tbx.c
Gimple
./tbx.c.004t.gimple
GKD
./tbx.o.gkd
OBJ
obj: ./tbx.o
unassigned
vcf.c
Gimple
./vcf.c.004t.gimple
GKD
./vcf.o.gkd
OBJ
obj: ./vcf.o
vcfutils.c
Gimple
./vcfutils.c.004t.gimple
GKD
./vcfutils.o.gkd
OBJ
obj: ./vcfutils.o
cram_codecs.c
cram_decode.c
cram_encode.c
cram_index.c
cram_io.c
cram_samtools.c
cram_stats.c
files.c
mFILE.c
md5.c
open_trace_file.c
pooled_alloc.c
sam_header.c
string_alloc.c
thread_pool.c
vlen.c
zfio.c
includes
kfunc.c
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
knetfile.c
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/time.h
../headers//usr/include/x86_64-linux-gnu/sys/select.h
../headers//usr/include/unistd.h
../headers//usr/include/x86_64-linux-gnu/bits/sockaddr.h
../headers//usr/include/x86_64-linux-gnu/bits/socket.h
../headers//usr/include/netdb.h
../headers/htslib/knetfile.h
../headers//usr/include/x86_64-linux-gnu/bits/select2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/sys/socket.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/x86_64-linux-gnu/bits/socket_type.h
kstring.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers/htslib/kstring.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
bgzf.c
../headers/htslib/hfile.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers/htslib/hts.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdint.h
../headers/htslib/bgzf.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers/htslib/khash.h
../headers//usr/include/stdlib.h
../headers//usr/include/pthread.h
../headers//usr/include/assert.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/string.h
faidx.c
../headers/htslib/khash.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers/htslib/bgzf.h
../headers/htslib/faidx.h
../headers/htslib/knetfile.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
hfile.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/socket2.h
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/time.h
../headers/htslib/hfile.h
./hfile_internal.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/unistd.h
../headers//usr/include/x86_64-linux-gnu/sys/socket.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
hfile_net.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers/htslib/hfile.h
./hfile_internal.h
../headers/htslib/knetfile.h
hts.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers/htslib/hfile.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers/htslib/hts.h
./htslib/khash.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/stdint.h
../headers/htslib/bgzf.h
../headers/cram/cram_structs.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./cram/sam_header.h
./cram/thread_pool.h
../headers/cram/cram_codecs.h
../headers/htslib/ksort.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers/cram/cram_io.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/unistd.h
sam.c
./htslib/kstring.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers/htslib/hts.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./htslib/khash.h
../headers/htslib/hfile.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers//usr/include/stdint.h
../headers/htslib/bgzf.h
../headers/cram/cram_structs.h
../headers/htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./cram/sam_header.h
./cram/thread_pool.h
../headers/cram/cram_codecs.h
../headers//usr/include/stdlib.h
../headers/cram/cram_decode.h
../headers/cram/cram_io.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/string.h
../headers/cram/cram_index.h
../headers//usr/include/ctype.h
../headers/cram/cram_encode.h
../headers//usr/include/assert.h
synced_bcf_reader.c
../headers/htslib/vcf.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers/htslib/khash_str2int.h
./htslib/khash.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers/htslib/kstring.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers/htslib/hts.h
../headers/htslib/tbx.h
../headers/htslib/synced_bcf_reader.h
../headers//usr/include/stdlib.h
../headers//usr/include/assert.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
vcf_sweep.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdint.h
../headers/htslib/hts.h
../headers/htslib/bgzf.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers/htslib/vcf.h
../headers/htslib/vcf_sweep.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/assert.h
tbx.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers/htslib/hts.h
../headers/htslib/bgzf.h
../headers/htslib/tbx.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers/htslib/khash.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/assert.h
unassigned
../headers/htslib/kstring.h
vcf.c
../headers/htslib/khash.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers/htslib/vcf.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers/htslib/hfile.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers/htslib/bgzf.h
../headers/htslib/hts.h
../headers/htslib/tbx.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/assert.h
vcfutils.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers/htslib/kstring.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers/htslib/vcf.h
../headers//usr/include/stdint.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers/htslib/hts.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdlib.h
../headers//usr/include/assert.h
../headers//usr/include/string.h
cram_codecs.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdlib.h
../headers//usr/include/stdint.h
./cram/string_alloc.h
./htslib/khash.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./cram/sam_header.h
./cram/cram_structs.h
./cram/cram_codecs.h
./cram/cram_io.h
../headers//usr/include/string.h
../headers//usr/include/assert.h
cram_decode.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./cram/cram_structs.h
./htslib/khash.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdint.h
./htslib/hts.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./cram/sam_header.h
./cram/thread_pool.h
./cram/cram_codecs.h
./cram/md5.h
../headers//usr/include/stdlib.h
./cram/cram_io.h
../headers//usr/include/string.h
../headers//usr/include/pthread.h
../headers//usr/include/assert.h
cram_encode.c
./cram/sam_header.h
./htslib/khash.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./cram/cram_structs.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdint.h
./htslib/hts.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./cram/thread_pool.h
./cram/cram_codecs.h
./cram/md5.h
../headers//usr/include/stdlib.h
./cram/cram_stats.h
../headers//usr/include/assert.h
./cram/cram_io.h
../headers//usr/include/pthread.h
cram_index.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./htslib/hfile.h
./htslib/kstring.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/zlib.h
../headers//usr/include/stdint.h
./htslib/hts.h
./cram/cram_structs.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./htslib/khash.h
./cram/sam_header.h
./cram/thread_pool.h
./cram/cram_codecs.h
./cram/zfio.h
../headers//usr/include/stdlib.h
./cram/cram_io.h
./cram/cram_decode.h
../headers//usr/include/assert.h
../headers//usr/include/string.h
cram_io.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./cram/cram_structs.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./htslib/khash.h
./htslib/hfile.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
./cram/sam_header.h
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/stdint.h
./htslib/hts.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./cram/thread_pool.h
./cram/cram_codecs.h
./cram/md5.h
./cram/mFILE.h
../headers//usr/include/stdlib.h
./cram/cram_encode.h
../headers//usr/include/assert.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/unistd.h
../headers//usr/include/pthread.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
./cram/misc.h
./cram/open_trace_file.h
./cram/cram_stats.h
./cram/cram_decode.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
./cram/cram_index.h
cram_samtools.c
./htslib/hts.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./htslib/khash.h
../headers//usr/include/libio.h
./cram/sam_header.h
./htslib/kstring.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
./cram/cram_structs.h
cram_stats.c
./cram/cram_structs.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdint.h
./htslib/hts.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./htslib/khash.h
./cram/sam_header.h
./cram/thread_pool.h
./cram/cram_codecs.h
../headers//usr/include/stdlib.h
../headers//usr/include/assert.h
files.c
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/stdio.h
mFILE.c
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
./cram/mFILE.h
../headers//usr/include/stdlib.h
../headers//usr/include/unistd.h
./cram/vlen.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
md5.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers/cram/md5.h
open_trace_file.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./htslib/hfile.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./cram/mFILE.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./cram/misc.h
pooled_alloc.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./cram/pooled_alloc.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
sam_header.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./cram/sam_header.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./htslib/khash.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./htslib/kstring.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
./cram/string_alloc.h
./cram/pooled_alloc.h
../headers//usr/include/stdint.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
string_alloc.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers/cram/string_alloc.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
thread_pool.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/time.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/time.h
./cram/thread_pool.h
../headers//usr/include/stdlib.h
../headers//usr/include/pthread.h
../headers//usr/include/x86_64-linux-gnu/bits/sigthread.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
vlen.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
zfio.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/zlib.h
./cram/zfio.h
../headers//usr/include/stdlib.h
libraries
../libs/lib/x86_64-linux-gnu/libz.so.1
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libpthread.so.0
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
tabix
compile units
unassigned
tabix.c
Gimple
./tabix.c.004t.gimple
GKD
./tabix.o.gkd
OBJ
obj: ./tabix.o
bgzf.c
Gimple
./bgzf.c.004t.gimple
GKD
./bgzf.o.gkd
OBJ
obj: ./bgzf.o
hfile.c
Gimple
./hfile.c.004t.gimple
GKD
./hfile.o.gkd
OBJ
obj: ./hfile.o
hfile_net.c
Gimple
./hfile_net.c.004t.gimple
GKD
./hfile_net.o.gkd
OBJ
obj: ./hfile_net.o
hts.c
Gimple
./hts.c.004t.gimple
GKD
./hts.o.gkd
OBJ
obj: ./hts.o
sam.c
Gimple
./sam.c.004t.gimple
GKD
./sam.o.gkd
OBJ
obj: ./sam.o
tbx.c
Gimple
./tbx.c.004t.gimple
GKD
./tbx.o.gkd
OBJ
obj: ./tbx.o
unassigned
vcf.c
Gimple
./vcf.c.004t.gimple
GKD
./vcf.o.gkd
OBJ
obj: ./vcf.o
cram_decode.c
cram_encode.c
cram_index.c
cram_io.c
cram_samtools.c
cram_stats.c
files.c
mFILE.c
md5.c
open_trace_file.c
sam_header.c
string_alloc.c
thread_pool.c
vlen.c
zfio.c
knetfile.c
Gimple
./knetfile.c.004t.gimple
GKD
./knetfile.o.gkd
OBJ
obj: ./knetfile.o
kstring.c
Gimple
./kstring.c.004t.gimple
GKD
./kstring.o.gkd
OBJ
obj: ./kstring.o
cram_codecs.c
pooled_alloc.c
includes
unassigned
../headers/htslib/vcf.h
tabix.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/time.h
../headers//usr/include/getopt.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/stdint.h
../headers/htslib/hts.h
../headers/htslib/bgzf.h
../headers/htslib/tbx.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers//usr/include/string.h
../headers//usr/include/unistd.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers/htslib/sam.h
bgzf.c
../headers/htslib/hfile.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers/htslib/hts.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdint.h
../headers/htslib/bgzf.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers/htslib/khash.h
../headers//usr/include/stdlib.h
../headers//usr/include/pthread.h
../headers//usr/include/assert.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/string.h
hfile.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/socket2.h
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/time.h
../headers/htslib/hfile.h
./hfile_internal.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/unistd.h
../headers//usr/include/x86_64-linux-gnu/sys/socket.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
hfile_net.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers/htslib/hfile.h
./hfile_internal.h
../headers/htslib/knetfile.h
hts.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers/htslib/hfile.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers/htslib/hts.h
./htslib/khash.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/stdint.h
../headers/htslib/bgzf.h
../headers/cram/cram_structs.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./cram/sam_header.h
./cram/thread_pool.h
../headers/cram/cram_codecs.h
../headers/htslib/ksort.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers/cram/cram_io.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/unistd.h
sam.c
./htslib/kstring.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers/htslib/hts.h
./htslib/khash.h
../headers/htslib/hfile.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers//usr/include/stdint.h
../headers/htslib/bgzf.h
../headers/cram/cram_structs.h
../headers/htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./cram/sam_header.h
./cram/thread_pool.h
../headers/cram/cram_codecs.h
../headers//usr/include/stdlib.h
../headers/cram/cram_decode.h
../headers/cram/cram_io.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/string.h
../headers/cram/cram_index.h
../headers//usr/include/ctype.h
../headers/cram/cram_encode.h
../headers//usr/include/assert.h
tbx.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers/htslib/hts.h
../headers/htslib/bgzf.h
../headers/htslib/tbx.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers/htslib/khash.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/assert.h
unassigned
../headers/htslib/kstring.h
vcf.c
../headers/htslib/khash.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers/htslib/vcf.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers/htslib/hfile.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers/htslib/bgzf.h
../headers/htslib/hts.h
../headers/htslib/tbx.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/assert.h
cram_decode.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./cram/cram_structs.h
./htslib/khash.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdint.h
./htslib/hts.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./cram/sam_header.h
./cram/thread_pool.h
./cram/cram_codecs.h
./cram/md5.h
../headers//usr/include/stdlib.h
./cram/cram_io.h
../headers//usr/include/string.h
../headers//usr/include/pthread.h
../headers//usr/include/assert.h
cram_encode.c
./cram/sam_header.h
./htslib/khash.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./cram/cram_structs.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdint.h
./htslib/hts.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./cram/thread_pool.h
./cram/cram_codecs.h
./cram/md5.h
../headers//usr/include/stdlib.h
./cram/cram_stats.h
../headers//usr/include/assert.h
./cram/cram_io.h
../headers//usr/include/pthread.h
cram_index.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./htslib/hfile.h
./htslib/kstring.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/zlib.h
../headers//usr/include/stdint.h
./htslib/hts.h
./cram/cram_structs.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./htslib/khash.h
./cram/sam_header.h
./cram/thread_pool.h
./cram/cram_codecs.h
./cram/zfio.h
../headers//usr/include/stdlib.h
./cram/cram_io.h
./cram/cram_decode.h
../headers//usr/include/assert.h
../headers//usr/include/string.h
cram_io.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./cram/cram_structs.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./htslib/khash.h
./htslib/hfile.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
./cram/sam_header.h
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/stdint.h
./htslib/hts.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./cram/thread_pool.h
./cram/cram_codecs.h
./cram/md5.h
./cram/mFILE.h
../headers//usr/include/stdlib.h
./cram/cram_encode.h
../headers//usr/include/assert.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/unistd.h
../headers//usr/include/pthread.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
./cram/misc.h
./cram/open_trace_file.h
./cram/cram_stats.h
./cram/cram_decode.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
./cram/cram_index.h
cram_samtools.c
./htslib/hts.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./htslib/khash.h
../headers//usr/include/libio.h
./cram/sam_header.h
./htslib/kstring.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
./cram/cram_structs.h
cram_stats.c
./cram/cram_structs.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdint.h
./htslib/hts.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./htslib/khash.h
./cram/sam_header.h
./cram/thread_pool.h
./cram/cram_codecs.h
../headers//usr/include/stdlib.h
../headers//usr/include/assert.h
files.c
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/stdio.h
mFILE.c
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
./cram/mFILE.h
../headers//usr/include/stdlib.h
../headers//usr/include/unistd.h
./cram/vlen.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
md5.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers/cram/md5.h
open_trace_file.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./htslib/hfile.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./cram/mFILE.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./cram/misc.h
sam_header.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./cram/sam_header.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./htslib/khash.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./htslib/kstring.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
./cram/string_alloc.h
./cram/pooled_alloc.h
../headers//usr/include/stdint.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
string_alloc.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers/cram/string_alloc.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
thread_pool.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/time.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/time.h
./cram/thread_pool.h
../headers//usr/include/stdlib.h
../headers//usr/include/pthread.h
../headers//usr/include/x86_64-linux-gnu/bits/sigthread.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
vlen.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
zfio.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/zlib.h
./cram/zfio.h
../headers//usr/include/stdlib.h
knetfile.c
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/time.h
../headers//usr/include/x86_64-linux-gnu/sys/select.h
../headers//usr/include/unistd.h
../headers//usr/include/x86_64-linux-gnu/bits/sockaddr.h
../headers//usr/include/x86_64-linux-gnu/bits/socket.h
../headers//usr/include/netdb.h
../headers/htslib/knetfile.h
../headers//usr/include/x86_64-linux-gnu/bits/select2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/sys/socket.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/x86_64-linux-gnu/bits/socket_type.h
kstring.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers/htslib/kstring.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
cram_codecs.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdlib.h
../headers//usr/include/stdint.h
./cram/string_alloc.h
./htslib/khash.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./cram/sam_header.h
./cram/cram_structs.h
./cram/cram_codecs.h
./cram/cram_io.h
../headers//usr/include/string.h
../headers//usr/include/assert.h
pooled_alloc.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./cram/pooled_alloc.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
libraries
../libs/lib/x86_64-linux-gnu/libz.so.1
../libs/lib/x86_64-linux-gnu/libpthread.so.0
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
libhts.so.1.1-1
compile units
kfunc.c
Gimple
./kfunc.c.004t.gimple
GKD
./kfunc.o.gkd
OBJ
obj: ./kfunc.o
knetfile.c
Gimple
./knetfile.c.004t.gimple
GKD
./knetfile.o.gkd
OBJ
obj: ./knetfile.o
kstring.c
Gimple
./kstring.c.004t.gimple
GKD
./kstring.o.gkd
OBJ
obj: ./kstring.o
bgzf.c
Gimple
./bgzf.c.004t.gimple
GKD
./bgzf.o.gkd
OBJ
obj: ./bgzf.o
faidx.c
Gimple
./faidx.c.004t.gimple
GKD
./faidx.o.gkd
OBJ
obj: ./faidx.o
hfile.c
Gimple
./hfile.c.004t.gimple
GKD
./hfile.o.gkd
OBJ
obj: ./hfile.o
hfile_net.c
Gimple
./hfile_net.c.004t.gimple
GKD
./hfile_net.o.gkd
OBJ
obj: ./hfile_net.o
hts.c
Gimple
./hts.c.004t.gimple
GKD
./hts.o.gkd
OBJ
obj: ./hts.o
sam.c
Gimple
./sam.c.004t.gimple
GKD
./sam.o.gkd
OBJ
obj: ./sam.o
synced_bcf_reader.c
Gimple
./synced_bcf_reader.c.004t.gimple
GKD
./synced_bcf_reader.o.gkd
OBJ
obj: ./synced_bcf_reader.o
vcf_sweep.c
Gimple
./vcf_sweep.c.004t.gimple
GKD
./vcf_sweep.o.gkd
OBJ
obj: ./vcf_sweep.o
tbx.c
Gimple
./tbx.c.004t.gimple
GKD
./tbx.o.gkd
OBJ
obj: ./tbx.o
unassigned
vcf.c
Gimple
./vcf.c.004t.gimple
GKD
./vcf.o.gkd
OBJ
obj: ./vcf.o
vcfutils.c
Gimple
./vcfutils.c.004t.gimple
GKD
./vcfutils.o.gkd
OBJ
obj: ./vcfutils.o
cram_codecs.c
cram_decode.c
cram_encode.c
cram_index.c
cram_io.c
cram_samtools.c
cram_stats.c
files.c
mFILE.c
md5.c
open_trace_file.c
pooled_alloc.c
sam_header.c
string_alloc.c
thread_pool.c
vlen.c
zfio.c
includes
kfunc.c
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
knetfile.c
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/time.h
../headers//usr/include/x86_64-linux-gnu/sys/select.h
../headers//usr/include/unistd.h
../headers//usr/include/x86_64-linux-gnu/bits/sockaddr.h
../headers//usr/include/x86_64-linux-gnu/bits/socket.h
../headers//usr/include/netdb.h
../headers/htslib/knetfile.h
../headers//usr/include/x86_64-linux-gnu/bits/select2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/sys/socket.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/x86_64-linux-gnu/bits/socket_type.h
kstring.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers/htslib/kstring.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
bgzf.c
../headers/htslib/hfile.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers/htslib/hts.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdint.h
../headers/htslib/bgzf.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers/htslib/khash.h
../headers//usr/include/stdlib.h
../headers//usr/include/pthread.h
../headers//usr/include/assert.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/string.h
faidx.c
../headers/htslib/khash.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers/htslib/bgzf.h
../headers/htslib/faidx.h
../headers/htslib/knetfile.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
hfile.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/socket2.h
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/time.h
../headers/htslib/hfile.h
./hfile_internal.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/unistd.h
../headers//usr/include/x86_64-linux-gnu/sys/socket.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
hfile_net.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers/htslib/hfile.h
./hfile_internal.h
../headers/htslib/knetfile.h
hts.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers/htslib/hfile.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers/htslib/hts.h
./htslib/khash.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/stdint.h
../headers/htslib/bgzf.h
../headers/cram/cram_structs.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./cram/sam_header.h
./cram/thread_pool.h
../headers/cram/cram_codecs.h
../headers/htslib/ksort.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers/cram/cram_io.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/unistd.h
sam.c
./htslib/kstring.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers/htslib/hts.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./htslib/khash.h
../headers/htslib/hfile.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers//usr/include/stdint.h
../headers/htslib/bgzf.h
../headers/cram/cram_structs.h
../headers/htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./cram/sam_header.h
./cram/thread_pool.h
../headers/cram/cram_codecs.h
../headers//usr/include/stdlib.h
../headers/cram/cram_decode.h
../headers/cram/cram_io.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/string.h
../headers/cram/cram_index.h
../headers//usr/include/ctype.h
../headers/cram/cram_encode.h
../headers//usr/include/assert.h
synced_bcf_reader.c
../headers/htslib/vcf.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers/htslib/khash_str2int.h
./htslib/khash.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers/htslib/kstring.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers/htslib/hts.h
../headers/htslib/tbx.h
../headers/htslib/synced_bcf_reader.h
../headers//usr/include/stdlib.h
../headers//usr/include/assert.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
vcf_sweep.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdint.h
../headers/htslib/hts.h
../headers/htslib/bgzf.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers/htslib/vcf.h
../headers/htslib/vcf_sweep.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/assert.h
tbx.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers/htslib/hts.h
../headers/htslib/bgzf.h
../headers/htslib/tbx.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers/htslib/khash.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/assert.h
unassigned
../headers/htslib/kstring.h
vcf.c
../headers/htslib/khash.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers/htslib/vcf.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers/htslib/hfile.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers/htslib/bgzf.h
../headers/htslib/hts.h
../headers/htslib/tbx.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/assert.h
vcfutils.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers/htslib/kstring.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers/htslib/vcf.h
../headers//usr/include/stdint.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers/htslib/hts.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdlib.h
../headers//usr/include/assert.h
../headers//usr/include/string.h
cram_codecs.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdlib.h
../headers//usr/include/stdint.h
./cram/string_alloc.h
./htslib/khash.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./cram/sam_header.h
./cram/cram_structs.h
./cram/cram_codecs.h
./cram/cram_io.h
../headers//usr/include/string.h
../headers//usr/include/assert.h
cram_decode.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./cram/cram_structs.h
./htslib/khash.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdint.h
./htslib/hts.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./cram/sam_header.h
./cram/thread_pool.h
./cram/cram_codecs.h
./cram/md5.h
../headers//usr/include/stdlib.h
./cram/cram_io.h
../headers//usr/include/string.h
../headers//usr/include/pthread.h
../headers//usr/include/assert.h
cram_encode.c
./cram/sam_header.h
./htslib/khash.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./cram/cram_structs.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdint.h
./htslib/hts.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./cram/thread_pool.h
./cram/cram_codecs.h
./cram/md5.h
../headers//usr/include/stdlib.h
./cram/cram_stats.h
../headers//usr/include/assert.h
./cram/cram_io.h
../headers//usr/include/pthread.h
cram_index.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./htslib/hfile.h
./htslib/kstring.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/zlib.h
../headers//usr/include/stdint.h
./htslib/hts.h
./cram/cram_structs.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./htslib/khash.h
./cram/sam_header.h
./cram/thread_pool.h
./cram/cram_codecs.h
./cram/zfio.h
../headers//usr/include/stdlib.h
./cram/cram_io.h
./cram/cram_decode.h
../headers//usr/include/assert.h
../headers//usr/include/string.h
cram_io.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./cram/cram_structs.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./htslib/khash.h
./htslib/hfile.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
./cram/sam_header.h
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/stdint.h
./htslib/hts.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./cram/thread_pool.h
./cram/cram_codecs.h
./cram/md5.h
./cram/mFILE.h
../headers//usr/include/stdlib.h
./cram/cram_encode.h
../headers//usr/include/assert.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/unistd.h
../headers//usr/include/pthread.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
./cram/misc.h
./cram/open_trace_file.h
./cram/cram_stats.h
./cram/cram_decode.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
./cram/cram_index.h
cram_samtools.c
./htslib/hts.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./htslib/khash.h
../headers//usr/include/libio.h
./cram/sam_header.h
./htslib/kstring.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
./cram/cram_structs.h
cram_stats.c
./cram/cram_structs.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdint.h
./htslib/hts.h
./htslib/sam.h
./cram/cram_samtools.h
./cram/string_alloc.h
./cram/pooled_alloc.h
./htslib/khash.h
./cram/sam_header.h
./cram/thread_pool.h
./cram/cram_codecs.h
../headers//usr/include/stdlib.h
../headers//usr/include/assert.h
files.c
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/stdio.h
mFILE.c
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
./cram/mFILE.h
../headers//usr/include/stdlib.h
../headers//usr/include/unistd.h
./cram/vlen.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
md5.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers/cram/md5.h
open_trace_file.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./htslib/hfile.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./cram/mFILE.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./cram/misc.h
pooled_alloc.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./cram/pooled_alloc.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
sam_header.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./cram/sam_header.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./htslib/khash.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
./htslib/kstring.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
./cram/string_alloc.h
./cram/pooled_alloc.h
../headers//usr/include/stdint.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
string_alloc.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers/cram/string_alloc.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
thread_pool.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/time.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/time.h
./cram/thread_pool.h
../headers//usr/include/stdlib.h
../headers//usr/include/pthread.h
../headers//usr/include/x86_64-linux-gnu/bits/sigthread.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
vlen.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
zfio.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/zlib.h
./cram/zfio.h
../headers//usr/include/stdlib.h
libraries
../libs/lib/x86_64-linux-gnu/libz.so.1
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libpthread.so.0
../libs/lib/x86_64-linux-gnu/libc.so.6
manual