idba - mipsel

Documentation

Binaries

short_sequence_unittest

compile units

includes

unassigned

short_sequence_unittest.cpp

unassigned

short_sequence.cpp

unassigned

sequence.cpp

unassigned

compact_sequence.cpp

gtest_main.cc

unassigned

gtest-all.cc

libraries


manual

hash_table_unittest

compile units

includes

unassigned

hash_table_unittest.cpp

gtest_main.cc

unassigned

gtest-all.cc

libraries


manual

sim_reads_tran

compile units

includes

unassigned

sim_reads_tran.cpp

unassigned

options_description.cpp

unassigned

utils.cpp

unassigned

sequence_writer.cpp

unassigned

sequence_io.cpp

unassigned

sequence.cpp

unassigned

short_sequence.cpp

unassigned

sequence_reader.cpp

libraries


manual

histgram_unittest

compile units

includes

unassigned

histgram_unittest.cpp

gtest_main.cc

unassigned

gtest-all.cc

libraries


manual

split_fq

compile units

includes

unassigned

split_fq.cpp

unassigned

options_description.cpp

unassigned

sequence_reader.cpp

unassigned

sequence_writer.cpp

unassigned

sequence.cpp

libraries


manual

parallel_blat

compile units

includes

unassigned

parallel_blat.cpp

unassigned

options_description.cpp

unassigned

utils.cpp

unassigned

blat_record.cpp

unassigned

sequence_reader.cpp

unassigned

sequence_writer.cpp

unassigned

sequence.cpp

libraries


manual

validate_reads_blat

compile units

includes

unassigned

validate_reads_blat.cpp

unassigned

options_description.cpp

unassigned

utils.cpp

unassigned

blat_record.cpp

unassigned

sequence_writer.cpp

unassigned

sequence_io.cpp

unassigned

sequence.cpp

unassigned

short_sequence.cpp

unassigned

sequence_reader.cpp

libraries


manual

sort_reads

compile units

includes

unassigned

sort_reads.cpp

unassigned

options_description.cpp

unassigned

utils.cpp

unassigned

sequence_writer.cpp

unassigned

sequence_io.cpp

unassigned

sequence.cpp

unassigned

short_sequence.cpp

unassigned

sequence_reader.cpp

libraries


manual

validate_rna

compile units

includes

unassigned

validate_rna.cpp

unassigned

options_description.cpp

unassigned

utils.cpp

unassigned

blat_record.cpp

unassigned

sequence_writer.cpp

unassigned

sequence_io.cpp

unassigned

sequence.cpp

unassigned

short_sequence.cpp

unassigned

sequence_reader.cpp

libraries


manual

validate_component

compile units

includes

unassigned

validate_component.cpp

unassigned

options_description.cpp

unassigned

utils.cpp

unassigned

blat_record.cpp

unassigned

sequence_io.cpp

unassigned

sequence.cpp

unassigned

short_sequence.cpp

unassigned

sequence_reader.cpp

unassigned

sequence_writer.cpp

libraries


manual

fa2fq

compile units

includes

unassigned

fa2fq.cpp

unassigned

options_description.cpp

unassigned

sequence_reader.cpp

unassigned

sequence_writer.cpp

unassigned

sequence.cpp

libraries


manual

hash_map_unittest

compile units

includes

unassigned

hash_map_unittest.cpp

gtest_main.cc

unassigned

gtest-all.cc

libraries


manual

sim_reads

compile units

includes

unassigned

sim_reads.cpp

unassigned

options_description.cpp

unassigned

utils.cpp

unassigned

sequence_writer.cpp

unassigned

sequence_io.cpp

unassigned

sequence.cpp

unassigned

short_sequence.cpp

unassigned

sequence_reader.cpp

libraries


manual

parallel_rna_blat

compile units

includes

unassigned

parallel_rna_blat.cpp

unassigned

options_description.cpp

unassigned

utils.cpp

unassigned

blat_record.cpp

unassigned

sequence_reader.cpp

unassigned

sequence_writer.cpp

unassigned

sequence.cpp

libraries


manual

hash_set_unittest

compile units

includes

unassigned

hash_set_unittest.cpp

gtest_main.cc

unassigned

gtest-all.cc

libraries


manual

idba_ud

compile units

includes

unassigned

idba_ud.cpp

unassigned

hash_aligner.cpp

unassigned

options_description.cpp

unassigned

log.cpp

unassigned

utils.cpp

unassigned

sequence_writer.cpp

unassigned

sequence_io.cpp

unassigned

sequence.cpp

unassigned

hash_graph.cpp

scaffold_graph.cpp

unassigned

contig_graph.cpp

hash_graph_branch_group.cpp

local_assembler.cpp

unassigned

assembly_utility.cpp

math.cpp

unassigned

short_sequence.cpp

unassigned

sequence_reader.cpp

unassigned

contig_graph_branch_group.cpp

libraries


manual

kmer_unittest

compile units

includes

unassigned

kmer_unittest.cpp

gtest_main.cc

unassigned

gtest-all.cc

libraries


manual

atomic_integer_unittest

compile units

includes

unassigned

atomic_integer_unittest.cpp

gtest_main.cc

unassigned

gtest-all.cc

libraries


manual

sequence_unittest

compile units

includes

unassigned

sequence_unittest.cpp

unassigned

short_sequence.cpp

unassigned

sequence.cpp

unassigned

compact_sequence.cpp

gtest_main.cc

unassigned

gtest-all.cc

libraries


manual

fq2fa

compile units

includes

unassigned

fq2fa.cpp

unassigned

options_description.cpp

unassigned

sequence_reader.cpp

unassigned

sequence_writer.cpp

unassigned

sequence.cpp

libraries


manual

bit_edges_unittest

compile units

includes

unassigned

bit_edges_unittest.cpp

gtest_main.cc

unassigned

gtest-all.cc

libraries


manual

sample_reads

compile units

includes

unassigned

sample_reads.cpp

unassigned

options_description.cpp

unassigned

utils.cpp

unassigned

sequence_writer.cpp

unassigned

sequence_io.cpp

unassigned

sequence.cpp

unassigned

short_sequence.cpp

unassigned

sequence_reader.cpp

libraries


manual

sort_psl

compile units

includes

unassigned

sort_psl.cpp

unassigned

options_description.cpp

unassigned

blat_record.cpp

unassigned

utils.cpp

libraries


manual

print_graph

compile units

includes

unassigned

print_graph.cpp

unassigned

options_description.cpp

unassigned

sequence_io.cpp

unassigned

sequence.cpp

unassigned

hash_graph.cpp

unassigned

contig_graph.cpp

hash_graph_branch_group.cpp

unassigned

utils.cpp

unassigned

short_sequence.cpp

unassigned

sequence_reader.cpp

unassigned

sequence_writer.cpp

unassigned

contig_graph_branch_group.cpp

libraries


manual

test

compile units

includes

unassigned

test.cpp

unassigned

contig_graph.cpp

unassigned

sequence.cpp

unassigned

contig_graph_branch_group.cpp

libraries


manual

idba_hybrid

compile units

includes

unassigned

idba_hybrid.cpp

unassigned

hash_aligner.cpp

unassigned

options_description.cpp

unassigned

log.cpp

unassigned

utils.cpp

unassigned

sequence_writer.cpp

unassigned

sequence_io.cpp

unassigned

sequence.cpp

unassigned

hash_graph.cpp

scaffold_graph.cpp

unassigned

contig_graph.cpp

hash_graph_branch_group.cpp

local_assembler.cpp

unassigned

assembly_utility.cpp

math.cpp

unassigned

short_sequence.cpp

unassigned

sequence_reader.cpp

unassigned

contig_graph_branch_group.cpp

libraries


manual

raw_n50

compile units

includes

unassigned

raw_n50.cpp

unassigned

options_description.cpp

unassigned

utils.cpp

unassigned

sequence_io.cpp

unassigned

sequence.cpp

unassigned

short_sequence.cpp

unassigned

sequence_reader.cpp

unassigned

sequence_writer.cpp

libraries


manual

idba

compile units

includes

unassigned

idba.cpp

unassigned

hash_aligner.cpp

unassigned

options_description.cpp

unassigned

log.cpp

unassigned

utils.cpp

unassigned

sequence_writer.cpp

unassigned

sequence_io.cpp

unassigned

sequence.cpp

unassigned

hash_graph.cpp

scaffold_graph.cpp

unassigned

contig_graph.cpp

hash_graph_branch_group.cpp

unassigned

assembly_utility.cpp

math.cpp

unassigned

short_sequence.cpp

unassigned

sequence_reader.cpp

unassigned

contig_graph_branch_group.cpp

libraries


manual

managed_list_unittest

compile units

includes

unassigned

managed_list_unittest.cpp

gtest_main.cc

unassigned

gtest-all.cc

libraries


manual

split_fa

compile units

includes

unassigned

split_fa.cpp

unassigned

options_description.cpp

unassigned

sequence_reader.cpp

unassigned

sequence_writer.cpp

unassigned

sequence.cpp

libraries


manual

compact_sequence_unittest

compile units

includes

unassigned

compact_sequence_unittest.cpp

unassigned

short_sequence.cpp

unassigned

sequence.cpp

unassigned

compact_sequence.cpp

gtest_main.cc

unassigned

gtest-all.cc

libraries


manual

split_scaffold

compile units

includes

unassigned

split_scaffold.cpp

unassigned

options_description.cpp

unassigned

utils.cpp

unassigned

sequence_reader.cpp

unassigned

sequence_writer.cpp

unassigned

sequence.cpp

libraries


manual

idba_tran

compile units

includes

unassigned

idba_tran.cpp

unassigned

hash_aligner.cpp

unassigned

options_description.cpp

unassigned

log.cpp

unassigned

utils.cpp

unassigned

sequence_writer.cpp

unassigned

sequence_io.cpp

unassigned

sequence.cpp

unassigned

hash_graph.cpp

unassigned

contig_graph.cpp

hash_graph_branch_group.cpp

unassigned

contig_info.cpp

local_assembler.cpp

unassigned

assembly_utility.cpp

unassigned

short_sequence.cpp

unassigned

sequence_reader.cpp

unassigned

contig_graph_branch_group.cpp

libraries


manual

filter_contigs

compile units

includes

unassigned

filter_contigs.cpp

unassigned

options_description.cpp

unassigned

sequence_reader.cpp

unassigned

sequence_writer.cpp

unassigned

sequence.cpp

libraries


manual

vertex_status_unittest

compile units

includes

unassigned

vertex_status_unittest.cpp

gtest_main.cc

unassigned

gtest-all.cc

libraries


manual

scaffold

compile units

includes

unassigned

scaffold.cpp

unassigned

hash_aligner.cpp

unassigned

options_description.cpp

unassigned

utils.cpp

unassigned

sequence_io.cpp

unassigned

sequence.cpp

scaffold_graph.cpp

unassigned

contig_graph.cpp

unassigned

assembly_utility.cpp

math.cpp

unassigned

short_sequence.cpp

unassigned

sequence_reader.cpp

unassigned

sequence_writer.cpp

unassigned

contig_graph_branch_group.cpp

unassigned

hash_graph.cpp

hash_graph_branch_group.cpp

libraries


manual

validate_contigs_blat

compile units

includes

unassigned

validate_contigs_blat.cpp

unassigned

options_description.cpp

unassigned

utils.cpp

unassigned

blat_record.cpp

unassigned

sequence_writer.cpp

unassigned

sequence_io.cpp

unassigned

sequence.cpp

unassigned

short_sequence.cpp

unassigned

sequence_reader.cpp

libraries


manual

filterfa

compile units

includes

unassigned

filterfa.cpp

unassigned

options_description.cpp

unassigned

sequence_reader.cpp

unassigned

sequence_writer.cpp

unassigned

sequence.cpp

libraries


manual

shuffle_reads

compile units

includes

unassigned

shuffle_reads.cpp

unassigned

options_description.cpp

unassigned

sequence_writer.cpp

unassigned

sequence_io.cpp

unassigned

sequence.cpp

unassigned

utils.cpp

unassigned

short_sequence.cpp

unassigned

sequence_reader.cpp

libraries


manual

idba_tran_test

compile units

includes

unassigned

idba_tran_test.cpp

unassigned

hash_aligner.cpp

unassigned

options_description.cpp

unassigned

log.cpp

unassigned

utils.cpp

unassigned

sequence_writer.cpp

unassigned

sequence_io.cpp

unassigned

sequence.cpp

unassigned

hash_graph.cpp

unassigned

contig_graph.cpp

hash_graph_branch_group.cpp

unassigned

contig_info.cpp

local_assembler.cpp

unassigned

assembly_utility.cpp

unassigned

short_sequence.cpp

unassigned

sequence_reader.cpp

unassigned

contig_graph_branch_group.cpp

libraries


manual

validate_contigs_mummer

compile units

includes

unassigned

validate_contigs_mummer.cpp

unassigned

options_description.cpp

unassigned

utils.cpp

unassigned

sequence_writer.cpp

unassigned

sequence_io.cpp

unassigned

sequence.cpp

unassigned

short_sequence.cpp

unassigned

sequence_reader.cpp

libraries


manual

filter_blat

compile units

includes

unassigned

filter_blat.cpp

unassigned

options_description.cpp

unassigned

utils.cpp

unassigned

blat_record.cpp

libraries


manual