infernal - i386

Documentation

Binaries

hmmfetch

compile units

hmmfetch.c

Gimple

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errors.c

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p7_hmm.c

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p7_hmmfile.c

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evalues.c

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modelconfig.c

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modelstats.c

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p7_bg.c

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p7_gmx.c

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p7_hmmwindow.c

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p7_profile.c

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fwdback.c

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msvfilter.c

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vitfilter.c

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p7_omx.c

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p7_oprofile.c

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emit.c

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generic_fwdback.c

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hmmer.c

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logsum.c

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p7_trace.c

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ssvfilter.c

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easel.c

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esl_alphabet.c

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esl_dirichlet.c

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esl_fileparser.c

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esl_getopts.c

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esl_gumbel.c

Gimple

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esl_hmm.c

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esl_keyhash.c

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esl_mem.c

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esl_minimizer.c

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esl_random.c

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esl_randomseq.c

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esl_sq.c

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esl_sse.c

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esl_ssi.c

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esl_stats.c

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esl_vectorops.c

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includes

hmmfetch.c

errors.c

p7_hmm.c

p7_hmmfile.c

evalues.c

modelconfig.c

modelstats.c

p7_bg.c

p7_gmx.c

p7_hmmwindow.c

p7_profile.c

fwdback.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

emit.c

generic_fwdback.c

hmmer.c

logsum.c

p7_trace.c

ssvfilter.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl-alimap

compile units

esl-alimap.c

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easel.c

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esl_alphabet.c

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esl_getopts.c

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esl_msa.c

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esl_msafile.c

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esl_msafile_a2m.c

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esl_msafile_afa.c

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esl_msafile_clustal.c

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esl_msafile_phylip.c

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esl_msafile_psiblast.c

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esl_msafile_selex.c

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esl_msafile_stockholm.c

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esl_ssi.c

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esl_vectorops.c

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esl_wuss.c

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esl_buffer.c

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esl_keyhash.c

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esl_mem.c

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esl_random.c

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esl_stack.c

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includes

esl-alimap.c

easel.c

esl_alphabet.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_ssi.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_random.c

esl_stack.c

libraries

manual

hmmsearch

compile units

hmmsearch.c

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errors.c

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hmmer.c

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logsum.c

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modelconfig.c

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p7_bg.c

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p7_hmm.c

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p7_hmmfile.c

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p7_pipeline.c

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p7_profile.c

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p7_tophits.c

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p7_trace.c

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p7_msvdata.c

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fm_general.c

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fm_msv.c

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fwdback.c

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io.c

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msvfilter.c

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vitfilter.c

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p7_omx.c

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p7_oprofile.c

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fm.c

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evalues.c

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modelstats.c

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tracealign.c

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p7_alidisplay.c

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p7_domaindef.c

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p7_gmx.c

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p7_hmmwindow.c

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p7_null3.c

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p7_spensemble.c

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fm_alphabet.c

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decoding.c

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ssvfilter.c

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null2.c

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optacc.c

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stotrace.c

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emit.c

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generic_decoding.c

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generic_fwdback.c

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generic_optacc.c

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easel.c

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esl_alphabet.c

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esl_cluster.c

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esl_dirichlet.c

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esl_exponential.c

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esl_fileparser.c

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esl_getopts.c

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esl_gumbel.c

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esl_hmm.c

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esl_keyhash.c

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esl_mem.c

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esl_minimizer.c

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esl_msa.c

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esl_msafile.c

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esl_msafile_a2m.c

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esl_msafile_afa.c

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esl_msafile_clustal.c

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esl_msafile_phylip.c

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esl_msafile_psiblast.c

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esl_msafile_selex.c

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esl_msafile_stockholm.c

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esl_random.c

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esl_randomseq.c

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esl_sq.c

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esl_sqio.c

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esl_sqio_ascii.c

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esl_sqio_ncbi.c

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esl_sse.c

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esl_ssi.c

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esl_stats.c

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esl_stopwatch.c

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esl_threads.c

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esl_vectorops.c

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esl_workqueue.c

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esl_wuss.c

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esl_buffer.c

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esl_stack.c

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includes

hmmsearch.c

errors.c

hmmer.c

logsum.c

modelconfig.c

p7_bg.c

p7_hmm.c

p7_hmmfile.c

p7_pipeline.c

p7_profile.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

fwdback.c

io.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

evalues.c

modelstats.c

tracealign.c

p7_alidisplay.c

p7_domaindef.c

p7_gmx.c

p7_hmmwindow.c

p7_null3.c

p7_spensemble.c

fm_alphabet.c

decoding.c

ssvfilter.c

null2.c

optacc.c

stotrace.c

emit.c

generic_decoding.c

generic_fwdback.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_stopwatch.c

esl_threads.c

esl_vectorops.c

esl_workqueue.c

esl_wuss.c

esl_buffer.c

esl_stack.c

libraries

manual

esl-shuffle

compile units

esl-shuffle.c

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easel.c

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esl_alphabet.c

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esl_getopts.c

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esl_msa.c

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esl_msafile.c

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esl_msafile_a2m.c

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esl_msafile_afa.c

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esl_msafile_clustal.c

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esl_msafile_phylip.c

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esl_msafile_psiblast.c

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esl_msafile_selex.c

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esl_msafile_stockholm.c

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esl_msashuffle.c

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esl_random.c

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esl_randomseq.c

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esl_sq.c

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esl_sqio.c

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esl_sqio_ascii.c

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esl_sqio_ncbi.c

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esl_ssi.c

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esl_vectorops.c

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esl_wuss.c

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esl_buffer.c

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esl_keyhash.c

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esl_mem.c

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esl_stack.c

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includes

esl-shuffle.c

easel.c

esl_alphabet.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_msashuffle.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_ssi.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

libraries

manual

esl-compalign

compile units

esl-compalign.c

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easel.c

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esl_alphabet.c

Gimple

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esl_fileparser.c

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esl_getopts.c

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esl_msa.c

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esl_msafile.c

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esl_msafile_a2m.c

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esl_msafile_afa.c

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esl_msafile_clustal.c

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esl_msafile_phylip.c

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esl_msafile_psiblast.c

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esl_msafile_selex.c

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esl_msafile_stockholm.c

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esl_ssi.c

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esl_vectorops.c

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esl_wuss.c

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esl_buffer.c

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esl_keyhash.c

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esl_mem.c

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esl_random.c

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esl_stack.c

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includes

esl-compalign.c

easel.c

esl_alphabet.c

esl_fileparser.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_ssi.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_random.c

esl_stack.c

libraries

manual

esl-compstruct

compile units

esl-compstruct.c

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easel.c

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esl_getopts.c

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esl_msa.c

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esl_msafile.c

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esl_msafile_a2m.c

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esl_msafile_afa.c

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esl_msafile_clustal.c

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esl_msafile_phylip.c

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esl_msafile_psiblast.c

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esl_msafile_selex.c

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esl_msafile_stockholm.c

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esl_ssi.c

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esl_wuss.c

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esl_alphabet.c

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esl_buffer.c

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esl_keyhash.c

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esl_mem.c

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esl_stack.c

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esl_random.c

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includes

esl-compstruct.c

easel.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_ssi.c

esl_wuss.c

esl_alphabet.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

esl_random.c

libraries

manual

exactmatch

compile units

exactmatch.c

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hmmer.c

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fm_alphabet.c

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fm_general.c

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fm.c

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easel.c

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esl_getopts.c

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esl_mem.c

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esl_sq.c

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esl_alphabet.c

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includes

exactmatch.c

hmmer.c

fm_alphabet.c

fm_general.c

fm.c

easel.c

esl_getopts.c

esl_mem.c

esl_sq.c

esl_alphabet.c

libraries

manual

cmscan

compile units

cmscan.c

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cm.c

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cm_file.c

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cm_modelmaker.c

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cm_mx.c

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cm_parsetree.c

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cm_pipeline.c

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cm_qdband.c

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cm_tophits.c

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cm_trunc.c

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cm_p7_domaindef.c

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cm_p7_modelconfig_trunc.c

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cm_p7_modelmaker.c

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cp9.c

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cp9_modelmaker.c

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cp9_mx.c

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cp9_trace.c

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alphabet.c

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display.c

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errors.c

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hmmband.c

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logsum.c

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rnamat.c

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stats.c

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cm_alidisplay.c

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cm_alndata.c

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cm_dpalign.c

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cm_dpalign_trunc.c

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cm_dpsearch.c

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cm_dpsearch_trunc.c

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cm_dpsmall.c

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cm_modelconfig.c

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cm_submodel.c

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cp9_dp.c

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truncyk.c

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errors.c

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evalues.c

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generic_decoding.c

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generic_fwdback.c

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generic_null2.c

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generic_stotrace.c

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logsum.c

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modelconfig.c

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modelstats.c

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p7_alidisplay.c

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p7_bg.c

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p7_domaindef.c

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p7_gmx.c

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p7_hmm.c

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p7_hmmfile.c

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p7_hmmwindow.c

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p7_null3.c

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p7_pipeline.c

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p7_profile.c

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p7_spensemble.c

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p7_tophits.c

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p7_trace.c

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p7_msvdata.c

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fm_general.c

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fm_msv.c

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decoding.c

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fwdback.c

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io.c

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msvfilter.c

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null2.c

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optacc.c

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stotrace.c

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vitfilter.c

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p7_omx.c

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p7_oprofile.c

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fm.c

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emit.c

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hmmer.c

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tracealign.c

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fm_alphabet.c

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ssvfilter.c

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generic_optacc.c

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easel.c

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esl_alphabet.c

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esl_cluster.c

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esl_dirichlet.c

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esl_exponential.c

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esl_fileparser.c

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esl_getopts.c

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esl_gumbel.c

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esl_hmm.c

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esl_keyhash.c

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esl_mem.c

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esl_minimizer.c

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esl_msa.c

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esl_msafile.c

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GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_threads.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_workqueue.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

cmscan.c

cm.c

cm_file.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_pipeline.c

cm_qdband.c

cm_tophits.c

cm_trunc.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alidisplay.c

cm_alndata.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch.c

cm_dpsearch_trunc.c

cm_dpsmall.c

cm_modelconfig.c

cm_submodel.c

cp9_dp.c

truncyk.c

errors.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_threads.c

esl_vectorops.c

esl_workqueue.c

esl_wuss.c

esl_buffer.c

libraries

manual

esl-seqrange

compile units

esl-seqrange.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl-seqrange.c

easel.c

esl_getopts.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_ssi.c

esl_alphabet.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_sq.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

esl_random.c

libraries

manual

trcyk

compile units

esl_alphabet.c

trcyk.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

esl_alphabet.c

trcyk.c

cm.c

cm_file.c

cm_modelconfig.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_submodel.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

truncyk.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_dpsmall.c

cm_pipeline.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsearch.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

esl-ssdraw

compile units

esl-ssdraw.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile2.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

esl-ssdraw.c

easel.c

esl_alphabet.c

esl_fileparser.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile2.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_ssi.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_random.c

esl_stack.c

libraries

manual

sub_cm-test

compile units

sub_cm-test.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

sub_cm-test.c

cm.c

cm_file.c

cm_modelconfig.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_submodel.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_pipeline.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsearch.c

cm_dpsmall.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

esl-alistat

compile units

esl-alistat.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_distance.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile2.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

esl-alistat.c

easel.c

esl_alphabet.c

esl_distance.c

esl_dmatrix.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile2.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_ssi.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

libraries

manual

hmmpress

compile units

hmmpress.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

hmmpress.c

errors.c

hmmer.c

modelconfig.c

p7_bg.c

p7_hmm.c

p7_hmmfile.c

p7_profile.c

io.c

p7_oprofile.c

evalues.c

modelstats.c

p7_gmx.c

p7_hmmwindow.c

fwdback.c

msvfilter.c

vitfilter.c

p7_omx.c

emit.c

generic_fwdback.c

logsum.c

p7_trace.c

ssvfilter.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl-alimerge

compile units

esl-alimerge.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile2.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

esl-alimerge.c

easel.c

esl_alphabet.c

esl_fileparser.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile2.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_ssi.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_random.c

esl_stack.c

libraries

manual

rmark-rocplot

compile units

rmark-rocplot.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

rmark-rocplot.c

easel.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_random.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl-construct

compile units

esl-construct.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

esl-construct.c

easel.c

esl_alphabet.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_ssi.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_random.c

esl_stack.c

libraries

manual

hmmscan

compile units

hmmscan.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

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OBJ

esl_msafile_afa.c

Gimple

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OBJ

esl_msafile_clustal.c

Gimple

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OBJ

esl_msafile_phylip.c

Gimple

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OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

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OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

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OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_threads.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_workqueue.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

hmmscan.c

errors.c

hmmer.c

logsum.c

p7_bg.c

p7_hmmfile.c

p7_pipeline.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

fwdback.c

io.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

evalues.c

modelconfig.c

modelstats.c

tracealign.c

p7_alidisplay.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmwindow.c

p7_null3.c

p7_profile.c

p7_spensemble.c

fm_alphabet.c

decoding.c

ssvfilter.c

null2.c

optacc.c

stotrace.c

emit.c

generic_decoding.c

generic_fwdback.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_stopwatch.c

esl_threads.c

esl_vectorops.c

esl_workqueue.c

esl_wuss.c

esl_buffer.c

esl_stack.c

libraries

manual

cp9-test

compile units

cp9-test.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

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OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

cp9-test.c

cm.c

cm_file.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_modelconfig.c

cm_pipeline.c

cm_submodel.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsearch.c

cm_dpsmall.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

phmmer

compile units

phmmer.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_builder.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_prior.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

build.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

eweight.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

seqmodel.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msacluster.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_msaweight.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_rootfinder.c

Gimple

GKD

OBJ

esl_scorematrix.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_threads.c

Gimple

GKD

OBJ

esl_tree.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_workqueue.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_distance.c

Gimple

GKD

OBJ

esl_ratematrix.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

phmmer.c

errors.c

hmmer.c

logsum.c

p7_bg.c

p7_builder.c

p7_hmm.c

p7_pipeline.c

p7_prior.c

p7_profile.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

fwdback.c

io.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

build.c

evalues.c

eweight.c

modelconfig.c

modelstats.c

seqmodel.c

tracealign.c

p7_alidisplay.c

p7_domaindef.c

p7_gmx.c

p7_hmmwindow.c

p7_null3.c

p7_spensemble.c

fm_alphabet.c

decoding.c

ssvfilter.c

null2.c

optacc.c

stotrace.c

emit.c

generic_decoding.c

generic_fwdback.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_dmatrix.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msacluster.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_msaweight.c

esl_random.c

esl_randomseq.c

esl_rootfinder.c

esl_scorematrix.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_stopwatch.c

esl_threads.c

esl_tree.c

esl_vectorops.c

esl_workqueue.c

esl_wuss.c

esl_buffer.c

esl_distance.c

esl_ratematrix.c

esl_stack.c

libraries

manual

cmbuild

compile units

cmbuild.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

eweight.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

prior.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_builder.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_prior.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

build.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

eweight.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

seqmodel.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_distance.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msacluster.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_msaweight.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_rootfinder.c

Gimple

GKD

OBJ

esl_scorematrix.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_tree.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_ratematrix.c

Gimple

GKD

OBJ

includes

cmbuild.c

cm.c

cm_alndata.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsmall.c

cm_file.c

cm_modelconfig.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_pipeline.c

cm_qdband.c

cm_submodel.c

cm_tophits.c

cm_trunc.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

eweight.c

hmmband.c

logsum.c

prior.c

rnamat.c

stats.c

truncyk.c

cm_alidisplay.c

cm_dpsearch.c

cm_dpsearch_trunc.c

cp9_dp.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_builder.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_prior.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

build.c

emit.c

errors.c

eweight.c

hmmer.c

seqmodel.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_distance.c

esl_dmatrix.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msacluster.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_msaweight.c

esl_random.c

esl_randomseq.c

esl_rootfinder.c

esl_scorematrix.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_tree.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_ratematrix.c

libraries

manual

hmmc2

compile units

hmmc2.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmdutils.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

hmmc2.c

errors.c

hmmdutils.c

p7_hmm.c

p7_pipeline.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

fwdback.c

io.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

logsum.c

modelconfig.c

tracealign.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmmwindow.c

p7_null3.c

p7_profile.c

p7_spensemble.c

fm_alphabet.c

decoding.c

ssvfilter.c

null2.c

optacc.c

stotrace.c

generic_decoding.c

generic_fwdback.c

generic_optacc.c

hmmer.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_sq.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_stack.c

libraries

manual

bandcyk-truncation-test

compile units

bandcyk-truncation-test.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

bandcyk-truncation-test.c

cm.c

cm_file.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_modelconfig.c

cm_pipeline.c

cm_submodel.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsearch.c

cm_dpsmall.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

esl-weight

compile units

esl-weight.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_msaweight.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_tree.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_distance.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_msacluster.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

includes

esl-weight.c

easel.c

esl_alphabet.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_msaweight.c

esl_ssi.c

esl_tree.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_distance.c

esl_dmatrix.c

esl_keyhash.c

esl_mem.c

esl_msacluster.c

esl_random.c

esl_stack.c

esl_cluster.c

libraries

manual

cmcalibrate

compile units

cmcalibrate.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_histogram.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_threads.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_workqueue.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

cmcalibrate.c

cm.c

cm_dpsearch.c

cm_file.c

cm_modelconfig.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_submodel.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_pipeline.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsmall.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_histogram.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_threads.c

esl_vectorops.c

esl_workqueue.c

esl_wuss.c

esl_buffer.c

libraries

manual

hmmsim

compile units

hmmsim.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_msv.c

Gimple

GKD

OBJ

generic_viterbi.c

Gimple

GKD

OBJ

generic_vtrace.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_histogram.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

hmmsim.c

errors.c

evalues.c

generic_fwdback.c

generic_msv.c

generic_viterbi.c

generic_vtrace.c

hmmer.c

logsum.c

modelconfig.c

modelstats.c

p7_bg.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_profile.c

p7_trace.c

fwdback.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

emit.c

ssvfilter.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_histogram.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

libraries

manual

esl-seqstat

compile units

esl-seqstat.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

esl-seqstat.c

easel.c

esl_alphabet.c

esl_getopts.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_ssi.c

esl_vectorops.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

libraries

manual

cmalign

compile units

cmalign.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile2.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_threads.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_workqueue.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

cmalign.c

cm.c

cm_alndata.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsmall.c

cm_file.c

cm_modelconfig.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_pipeline.c

cm_qdband.c

cm_submodel.c

cm_tophits.c

cm_trunc.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

truncyk.c

cm_alidisplay.c

cm_dpsearch.c

cm_dpsearch_trunc.c

cp9_dp.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile2.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_threads.c

esl_vectorops.c

esl_workqueue.c

esl_wuss.c

esl_buffer.c

libraries

manual

esl-histplot

compile units

esl-histplot.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_histogram.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

esl-histplot.c

easel.c

esl_exponential.c

esl_getopts.c

esl_gumbel.c

esl_histogram.c

esl_minimizer.c

esl_random.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl-afetch

compile units

esl-afetch.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl-afetch.c

easel.c

esl_fileparser.c

esl_getopts.c

esl_keyhash.c

esl_mem.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_ssi.c

esl_wuss.c

esl_alphabet.c

esl_buffer.c

esl_stack.c

esl_random.c

libraries

manual

cmpress

compile units

cmpress.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

cmpress.c

cm.c

cm_file.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_modelconfig.c

cm_pipeline.c

cm_submodel.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsearch.c

cm_dpsmall.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

esl-alimask

compile units

esl-alimask.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile2.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_regexp.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

esl-alimask.c

easel.c

esl_alphabet.c

esl_fileparser.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile2.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_regexp.c

esl_ssi.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_random.c

esl_stack.c

libraries

manual

esl-sfetch

compile units

esl-sfetch.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_regexp.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl-sfetch.c

easel.c

esl_fileparser.c

esl_getopts.c

esl_keyhash.c

esl_mem.c

esl_regexp.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_ssi.c

esl_alphabet.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_wuss.c

esl_buffer.c

esl_stack.c

esl_random.c

libraries

manual

esl-selectn

compile units

esl-selectn.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl-selectn.c

easel.c

esl_getopts.c

esl_random.c

libraries

manual

esl-cluster

compile units

esl-cluster.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_tree.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl-cluster.c

easel.c

esl_dmatrix.c

esl_fileparser.c

esl_getopts.c

esl_keyhash.c

esl_mem.c

esl_stack.c

esl_tree.c

esl_vectorops.c

esl_random.c

libraries

manual

hmmlogo

compile units

hmmlogo.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

hmmlogo.c

errors.c

hmmer.c

p7_bg.c

p7_hmmfile.c

evalues.c

modelconfig.c

modelstats.c

p7_gmx.c

p7_hmm.c

p7_hmmwindow.c

p7_profile.c

fwdback.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

emit.c

generic_fwdback.c

logsum.c

p7_trace.c

ssvfilter.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl-alimanip

compile units

esl-alimanip.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_distance.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile2.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_tree.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

esl-alimanip.c

easel.c

esl_alphabet.c

esl_distance.c

esl_dmatrix.c

esl_fileparser.c

esl_getopts.c

esl_keyhash.c

esl_mem.c

esl_msa.c

esl_msafile.c

esl_msafile2.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_ssi.c

esl_stack.c

esl_tree.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

alimask

compile units

alimask.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_msaweight.c

Gimple

GKD

OBJ

esl_regexp.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_tree.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_distance.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_msacluster.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

includes

alimask.c

errors.c

hmmer.c

easel.c

esl_alphabet.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_msaweight.c

esl_regexp.c

esl_ssi.c

esl_stopwatch.c

esl_tree.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_distance.c

esl_dmatrix.c

esl_keyhash.c

esl_mem.c

esl_msacluster.c

esl_random.c

esl_stack.c

esl_cluster.c

libraries

manual

cmfetch

compile units

cmfetch.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

cmfetch.c

cm.c

cm_file.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_modelconfig.c

cm_pipeline.c

cm_submodel.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsearch.c

cm_dpsmall.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

rocplot

compile units

rocplot.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

rocplot.c

easel.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_random.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl-alipid

compile units

esl-alipid.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_distance.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

esl-alipid.c

easel.c

esl_alphabet.c

esl_distance.c

esl_dmatrix.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_ssi.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

libraries

manual

rmark-create

compile units

rmark-create.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_distance.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msacluster.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

rmark-create.c

easel.c

esl_alphabet.c

esl_distance.c

esl_dmatrix.c

esl_fileparser.c

esl_getopts.c

esl_hmm.c

esl_msa.c

esl_msacluster.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_ssi.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_cluster.c

esl_keyhash.c

esl_mem.c

esl_stack.c

libraries

manual

cmsearch

compile units

cmsearch.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_threads.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_workqueue.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

cmsearch.c

cm.c

cm_file.c

cm_modelconfig.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_pipeline.c

cm_qdband.c

cm_submodel.c

cm_tophits.c

cm_trunc.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alidisplay.c

cm_alndata.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch.c

cm_dpsearch_trunc.c

cm_dpsmall.c

cp9_dp.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_threads.c

esl_vectorops.c

esl_workqueue.c

esl_wuss.c

esl_buffer.c

libraries

manual

hmmconvert

compile units

hmmconvert.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

h2_io.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

hmmconvert.c

errors.c

h2_io.c

hmmer.c

p7_bg.c

p7_hmm.c

p7_hmmfile.c

evalues.c

modelconfig.c

modelstats.c

p7_gmx.c

p7_hmmwindow.c

p7_profile.c

fwdback.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

emit.c

generic_fwdback.c

logsum.c

p7_trace.c

ssvfilter.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_vectorops.c

libraries

manual

hmmemit

compile units

hmmemit.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

hmmemit.c

emit.c

errors.c

hmmer.c

modelconfig.c

modelstats.c

tracealign.c

p7_alidisplay.c

p7_bg.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_profile.c

p7_trace.c

decoding.c

fwdback.c

optacc.c

p7_omx.c

p7_oprofile.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_optacc.c

logsum.c

msvfilter.c

vitfilter.c

ssvfilter.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

libraries

manual

hmmalign

compile units

hmmalign.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

hmmalign.c

errors.c

hmmer.c

tracealign.c

p7_alidisplay.c

p7_bg.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_profile.c

p7_trace.c

decoding.c

fwdback.c

optacc.c

p7_omx.c

p7_oprofile.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_optacc.c

logsum.c

modelconfig.c

modelstats.c

p7_hmmwindow.c

msvfilter.c

vitfilter.c

emit.c

ssvfilter.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

libraries

manual

esl-mask

compile units

esl-mask.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl-mask.c

easel.c

esl_fileparser.c

esl_getopts.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_ssi.c

esl_alphabet.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

esl_random.c

libraries

manual

hmmbuild

compile units

hmmbuild.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_builder.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_prior.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

build.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

eweight.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

seqmodel.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msacluster.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_msaweight.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_rootfinder.c

Gimple

GKD

OBJ

esl_scorematrix.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_threads.c

Gimple

GKD

OBJ

esl_tree.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_workqueue.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_distance.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_ratematrix.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

hmmbuild.c

errors.c

hmmer.c

modelstats.c

p7_bg.c

p7_builder.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_prior.c

p7_profile.c

p7_trace.c

p7_oprofile.c

build.c

emit.c

evalues.c

eweight.c

generic_fwdback.c

logsum.c

modelconfig.c

seqmodel.c

tracealign.c

p7_alidisplay.c

decoding.c

fwdback.c

msvfilter.c

optacc.c

vitfilter.c

p7_omx.c

generic_decoding.c

generic_optacc.c

ssvfilter.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_dmatrix.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_msa.c

esl_msacluster.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_msaweight.c

esl_random.c

esl_randomseq.c

esl_rootfinder.c

esl_scorematrix.c

esl_sq.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_stopwatch.c

esl_threads.c

esl_tree.c

esl_vectorops.c

esl_workqueue.c

esl_wuss.c

esl_buffer.c

esl_cluster.c

esl_distance.c

esl_keyhash.c

esl_mem.c

esl_ratematrix.c

esl_stack.c

libraries

manual

cmemit

compile units

cmemit.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

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OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

cmemit.c

cm.c

cm_file.c

cm_modelconfig.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_submodel.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_pipeline.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsearch.c

cm_dpsmall.c

truncyk.c

emit.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

tracealign.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

errors.c

generic_optacc.c

hmmer.c

fm_alphabet.c

ssvfilter.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

esl-reformat

compile units

esl-reformat.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl-reformat.c

easel.c

esl_getopts.c

esl_mem.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_ssi.c

esl_wuss.c

esl_alphabet.c

esl_buffer.c

esl_keyhash.c

esl_stack.c

esl_random.c

libraries

manual

cmconvert

compile units

cmconvert.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

cmconvert.c

cm.c

cm_file.c

cm_modelconfig.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_submodel.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_pipeline.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsearch.c

cm_dpsmall.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

jackhmmer

compile units

jackhmmer.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_builder.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_prior.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

build.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

eweight.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

seqmodel.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msacluster.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_msaweight.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_rootfinder.c

Gimple

GKD

OBJ

esl_scorematrix.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_threads.c

Gimple

GKD

OBJ

esl_tree.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_workqueue.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_distance.c

Gimple

GKD

OBJ

esl_ratematrix.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

jackhmmer.c

errors.c

hmmer.c

logsum.c

p7_bg.c

p7_builder.c

p7_hmm.c

p7_hmmfile.c

p7_pipeline.c

p7_prior.c

p7_profile.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

fwdback.c

io.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

build.c

evalues.c

eweight.c

modelconfig.c

modelstats.c

seqmodel.c

tracealign.c

p7_alidisplay.c

p7_domaindef.c

p7_gmx.c

p7_hmmwindow.c

p7_null3.c

p7_spensemble.c

fm_alphabet.c

decoding.c

ssvfilter.c

null2.c

optacc.c

stotrace.c

emit.c

generic_decoding.c

generic_fwdback.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_dmatrix.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msacluster.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_msaweight.c

esl_random.c

esl_randomseq.c

esl_rootfinder.c

esl_scorematrix.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_stopwatch.c

esl_threads.c

esl_tree.c

esl_vectorops.c

esl_workqueue.c

esl_wuss.c

esl_buffer.c

esl_distance.c

esl_ratematrix.c

esl_stack.c

libraries

manual

nhmmer

compile units

nhmmer.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_builder.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_prior.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

build.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

eweight.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

seqmodel.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msacluster.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_msaweight.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_rootfinder.c

Gimple

GKD

OBJ

esl_scorematrix.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_threads.c

Gimple

GKD

OBJ

esl_tree.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_workqueue.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_distance.c

Gimple

GKD

OBJ

esl_ratematrix.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

nhmmer.c

errors.c

hmmer.c

logsum.c

modelconfig.c

p7_bg.c

p7_builder.c

p7_hmm.c

p7_hmmfile.c

p7_pipeline.c

p7_prior.c

p7_profile.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_alphabet.c

fm_general.c

fm_msv.c

fwdback.c

io.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

build.c

evalues.c

eweight.c

modelstats.c

seqmodel.c

tracealign.c

p7_alidisplay.c

p7_domaindef.c

p7_gmx.c

p7_hmmwindow.c

p7_null3.c

p7_spensemble.c

decoding.c

ssvfilter.c

null2.c

optacc.c

stotrace.c

emit.c

generic_decoding.c

generic_fwdback.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_dmatrix.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msacluster.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_msaweight.c

esl_random.c

esl_randomseq.c

esl_rootfinder.c

esl_scorematrix.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_stopwatch.c

esl_threads.c

esl_tree.c

esl_vectorops.c

esl_workqueue.c

esl_wuss.c

esl_buffer.c

esl_distance.c

esl_ratematrix.c

esl_stack.c

libraries

manual

makenhmmerdb

compile units

makenhmmerdb.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

divsufsort.c

Gimple

GKD

OBJ

includes

makenhmmerdb.c

hmmer.c

fm_alphabet.c

easel.c

esl_alphabet.c

esl_getopts.c

esl_mem.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_ssi.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_stack.c

esl_random.c

divsufsort.c

libraries

manual

cmstat

compile units

cmstat.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

eweight.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

prior.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_rootfinder.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

cmstat.c

cm.c

cm_file.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

eweight.c

hmmband.c

logsum.c

prior.c

rnamat.c

stats.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_modelconfig.c

cm_pipeline.c

cm_submodel.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsearch.c

cm_dpsmall.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_rootfinder.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

truncyk_check

compile units

truncyk_check.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

truncyk_check.c

cm.c

cm_file.c

cm_modelconfig.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_submodel.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

truncyk.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_dpsmall.c

cm_pipeline.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsearch.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

bandcyk-montecarlo-test

compile units

bandcyk-montecarlo-test.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

bandcyk-montecarlo-test.c

cm.c

cm_file.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_modelconfig.c

cm_pipeline.c

cm_submodel.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsearch.c

cm_dpsmall.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

sse_cmsearch

compile units

sse_cmsearch.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

cm_optimized.c

Gimple

GKD

OBJ

sse_cm_dpsearch.c

Gimple

GKD

OBJ

sse_cm_dpsmall.c

Gimple

GKD

OBJ

sse_cmcons_mscyk.c

Gimple

GKD

OBJ

sse_util.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

sse_cmcons_hitmx.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_histogram.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

sse_cmsearch.c

cm.c

cm_file.c

cm_modelconfig.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_submodel.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_optimized.c

sse_cm_dpsearch.c

sse_cm_dpsmall.c

sse_cmcons_mscyk.c

sse_util.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_dpsmall.c

cm_pipeline.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

sse_cmcons_hitmx.c

cm_alndata.c

cm_dpsearch.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_histogram.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

create-profmark

compile units

create-profmark.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_distance.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msacluster.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_msashuffle.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

includes

create-profmark.c

easel.c

esl_alphabet.c

esl_distance.c

esl_dmatrix.c

esl_getopts.c

esl_keyhash.c

esl_mem.c

esl_msa.c

esl_msacluster.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_msashuffle.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_ssi.c

esl_stack.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_cluster.c

libraries

manual

hmmstat

compile units

hmmstat.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

hmmstat.c

errors.c

hmmer.c

modelstats.c

p7_bg.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_profile.c

emit.c

evalues.c

generic_fwdback.c

logsum.c

modelconfig.c

p7_trace.c

fwdback.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

ssvfilter.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_vectorops.c

libraries

manual

hmmpgmd

compile units

hmmpgmd.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmdmstr.c

Gimple

GKD

OBJ

hmmdwrkr.c

Gimple

GKD

OBJ

hmmdutils.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_builder.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmcache.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_prior.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

build.c

Gimple

GKD

OBJ

cachedb.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

eweight.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

seqmodel.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msacluster.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_msaweight.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_rootfinder.c

Gimple

GKD

OBJ

esl_scorematrix.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_threads.c

Gimple

GKD

OBJ

esl_tree.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_distance.c

Gimple

GKD

OBJ

esl_ratematrix.c

Gimple

GKD

OBJ

includes

hmmpgmd.c

errors.c

hmmdmstr.c

hmmdwrkr.c

hmmdutils.c

hmmer.c

logsum.c

modelconfig.c

p7_bg.c

p7_builder.c

p7_hmm.c

p7_hmmcache.c

p7_hmmfile.c

p7_pipeline.c

p7_prior.c

p7_profile.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

fwdback.c

io.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

build.c

cachedb.c

evalues.c

eweight.c

modelstats.c

seqmodel.c

tracealign.c

p7_alidisplay.c

p7_domaindef.c

p7_gmx.c

p7_hmmwindow.c

p7_null3.c

p7_spensemble.c

fm_alphabet.c

decoding.c

ssvfilter.c

null2.c

optacc.c

stotrace.c

emit.c

generic_decoding.c

generic_fwdback.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_dmatrix.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msacluster.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_msaweight.c

esl_random.c

esl_randomseq.c

esl_rootfinder.c

esl_scorematrix.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_threads.c

esl_tree.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_distance.c

esl_ratematrix.c

libraries

manual