infernal - amd64

Documentation

Binaries

hmmfetch

compile units

hmmfetch.c

Gimple

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errors.c

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p7_hmm.c

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p7_hmmfile.c

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evalues.c

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modelconfig.c

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modelstats.c

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p7_bg.c

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p7_gmx.c

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p7_hmmwindow.c

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p7_profile.c

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fwdback.c

Gimple

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msvfilter.c

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vitfilter.c

Gimple

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p7_omx.c

Gimple

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p7_oprofile.c

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emit.c

Gimple

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generic_fwdback.c

Gimple

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hmmer.c

Gimple

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logsum.c

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p7_trace.c

Gimple

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ssvfilter.c

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easel.c

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esl_alphabet.c

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esl_dirichlet.c

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esl_fileparser.c

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esl_getopts.c

Gimple

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esl_gumbel.c

Gimple

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esl_hmm.c

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esl_keyhash.c

Gimple

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esl_mem.c

Gimple

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esl_minimizer.c

Gimple

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esl_random.c

Gimple

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esl_randomseq.c

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esl_sq.c

Gimple

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esl_sse.c

Gimple

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esl_ssi.c

Gimple

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esl_stats.c

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esl_vectorops.c

Gimple

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OBJ

includes

hmmfetch.c

errors.c

p7_hmm.c

p7_hmmfile.c

evalues.c

modelconfig.c

modelstats.c

p7_bg.c

p7_gmx.c

p7_hmmwindow.c

p7_profile.c

fwdback.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

emit.c

generic_fwdback.c

hmmer.c

logsum.c

p7_trace.c

ssvfilter.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl_random_utest

compile units

esl_random.c

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OBJ

easel.c

Gimple

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esl_dirichlet.c

Gimple

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esl_fileparser.c

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esl_getopts.c

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esl_minimizer.c

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esl_stats.c

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esl_vectorops.c

Gimple

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includes

esl_random.c

easel.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_minimizer.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl-alimap

compile units

esl-alimap.c

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easel.c

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esl_alphabet.c

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esl_getopts.c

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esl_msa.c

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esl_msafile.c

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esl_msafile_a2m.c

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esl_msafile_afa.c

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esl_msafile_clustal.c

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esl_msafile_phylip.c

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esl_msafile_psiblast.c

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esl_msafile_selex.c

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esl_msafile_stockholm.c

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esl_ssi.c

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esl_vectorops.c

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esl_wuss.c

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esl_buffer.c

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esl_keyhash.c

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esl_mem.c

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esl_random.c

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esl_stack.c

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includes

esl-alimap.c

easel.c

esl_alphabet.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_ssi.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_random.c

esl_stack.c

libraries

manual

hmmsearch

compile units

hmmsearch.c

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errors.c

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hmmer.c

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logsum.c

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modelconfig.c

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p7_bg.c

Gimple

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p7_hmm.c

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p7_hmmfile.c

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p7_pipeline.c

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p7_profile.c

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p7_tophits.c

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p7_trace.c

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p7_msvdata.c

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fm_general.c

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fm_msv.c

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fwdback.c

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io.c

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msvfilter.c

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vitfilter.c

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p7_omx.c

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p7_oprofile.c

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fm.c

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evalues.c

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modelstats.c

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tracealign.c

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p7_alidisplay.c

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p7_domaindef.c

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p7_gmx.c

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p7_hmmwindow.c

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p7_null3.c

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p7_spensemble.c

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fm_alphabet.c

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decoding.c

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ssvfilter.c

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null2.c

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optacc.c

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stotrace.c

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emit.c

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generic_decoding.c

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generic_fwdback.c

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generic_optacc.c

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easel.c

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esl_alphabet.c

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esl_cluster.c

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esl_dirichlet.c

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esl_exponential.c

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esl_fileparser.c

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esl_getopts.c

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esl_gumbel.c

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esl_hmm.c

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esl_keyhash.c

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esl_mem.c

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esl_minimizer.c

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esl_msa.c

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esl_msafile.c

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esl_msafile_a2m.c

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esl_msafile_afa.c

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esl_msafile_clustal.c

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esl_msafile_phylip.c

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esl_msafile_psiblast.c

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esl_msafile_selex.c

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esl_msafile_stockholm.c

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esl_random.c

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esl_randomseq.c

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esl_sq.c

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esl_sqio.c

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esl_sqio_ascii.c

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esl_sqio_ncbi.c

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esl_sse.c

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esl_ssi.c

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esl_stats.c

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esl_stopwatch.c

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esl_threads.c

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esl_vectorops.c

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esl_workqueue.c

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esl_wuss.c

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esl_buffer.c

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esl_stack.c

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includes

hmmsearch.c

errors.c

hmmer.c

logsum.c

modelconfig.c

p7_bg.c

p7_hmm.c

p7_hmmfile.c

p7_pipeline.c

p7_profile.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

fwdback.c

io.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

evalues.c

modelstats.c

tracealign.c

p7_alidisplay.c

p7_domaindef.c

p7_gmx.c

p7_hmmwindow.c

p7_null3.c

p7_spensemble.c

fm_alphabet.c

decoding.c

ssvfilter.c

null2.c

optacc.c

stotrace.c

emit.c

generic_decoding.c

generic_fwdback.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_stopwatch.c

esl_threads.c

esl_vectorops.c

esl_workqueue.c

esl_wuss.c

esl_buffer.c

esl_stack.c

libraries

manual

esl_gumbel_utest

compile units

esl_gumbel.c

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easel.c

Gimple

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esl_minimizer.c

Gimple

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esl_random.c

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esl_stats.c

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esl_vectorops.c

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includes

esl_gumbel.c

easel.c

esl_minimizer.c

esl_random.c

esl_stats.c

esl_vectorops.c

libraries

manual

msvfilter_utest

compile units

msvfilter.c

Gimple

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generic_viterbi.c

Gimple

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hmmer.c

Gimple

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p7_bg.c

Gimple

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p7_gmx.c

Gimple

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p7_hmm.c

Gimple

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p7_hmmwindow.c

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p7_profile.c

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ssvfilter.c

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p7_omx.c

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p7_oprofile.c

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modelconfig.c

Gimple

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easel.c

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esl_alphabet.c

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esl_dirichlet.c

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esl_fileparser.c

Gimple

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esl_getopts.c

Gimple

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esl_gumbel.c

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esl_hmm.c

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esl_minimizer.c

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esl_random.c

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esl_randomseq.c

Gimple

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esl_sse.c

Gimple

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esl_stats.c

Gimple

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esl_vectorops.c

Gimple

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OBJ

includes

msvfilter.c

generic_viterbi.c

hmmer.c

p7_bg.c

p7_gmx.c

p7_hmm.c

p7_hmmwindow.c

p7_profile.c

ssvfilter.c

p7_omx.c

p7_oprofile.c

modelconfig.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_sse.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl-shuffle

compile units

esl-shuffle.c

Gimple

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easel.c

Gimple

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esl_alphabet.c

Gimple

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esl_getopts.c

Gimple

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esl_msa.c

Gimple

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esl_msafile.c

Gimple

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esl_msafile_a2m.c

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esl_msafile_afa.c

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esl_msafile_clustal.c

Gimple

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esl_msafile_phylip.c

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esl_msafile_psiblast.c

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esl_msafile_selex.c

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esl_msafile_stockholm.c

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esl_msashuffle.c

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esl_random.c

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esl_randomseq.c

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esl_sq.c

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esl_sqio.c

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esl_sqio_ascii.c

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esl_sqio_ncbi.c

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esl_ssi.c

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esl_vectorops.c

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esl_wuss.c

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esl_buffer.c

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esl_keyhash.c

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esl_mem.c

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esl_stack.c

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includes

esl-shuffle.c

easel.c

esl_alphabet.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_msashuffle.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_ssi.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

libraries

manual

esl-compalign

compile units

esl-compalign.c

Gimple

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easel.c

Gimple

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esl_alphabet.c

Gimple

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esl_fileparser.c

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esl_getopts.c

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esl_msa.c

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esl_msafile.c

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esl_msafile_a2m.c

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esl_msafile_afa.c

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esl_msafile_clustal.c

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esl_msafile_phylip.c

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esl_msafile_psiblast.c

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esl_msafile_selex.c

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esl_msafile_stockholm.c

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esl_ssi.c

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esl_vectorops.c

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esl_wuss.c

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esl_buffer.c

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esl_keyhash.c

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esl_mem.c

Gimple

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esl_random.c

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esl_stack.c

Gimple

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includes

esl-compalign.c

easel.c

esl_alphabet.c

esl_fileparser.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_ssi.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_random.c

esl_stack.c

libraries

manual

esl_sq_utest

compile units

esl_sq.c

Gimple

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easel.c

Gimple

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esl_alphabet.c

Gimple

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esl_getopts.c

Gimple

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esl_random.c

Gimple

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includes

esl_sq.c

easel.c

esl_alphabet.c

esl_getopts.c

esl_random.c

libraries

manual

esl-compstruct

compile units

esl-compstruct.c

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easel.c

Gimple

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esl_getopts.c

Gimple

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esl_msa.c

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esl_msafile.c

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esl_msafile_a2m.c

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esl_msafile_afa.c

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esl_msafile_clustal.c

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esl_msafile_phylip.c

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esl_msafile_psiblast.c

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esl_msafile_selex.c

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esl_msafile_stockholm.c

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esl_ssi.c

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esl_wuss.c

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esl_alphabet.c

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esl_buffer.c

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esl_keyhash.c

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esl_mem.c

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esl_stack.c

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esl_random.c

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includes

esl-compstruct.c

easel.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_ssi.c

esl_wuss.c

esl_alphabet.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

esl_random.c

libraries

manual

esl_histogram_utest

compile units

esl_histogram.c

Gimple

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OBJ

easel.c

Gimple

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esl_exponential.c

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esl_getopts.c

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esl_gumbel.c

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esl_minimizer.c

Gimple

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esl_random.c

Gimple

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esl_stats.c

Gimple

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esl_vectorops.c

Gimple

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OBJ

includes

esl_histogram.c

easel.c

esl_exponential.c

esl_getopts.c

esl_gumbel.c

esl_minimizer.c

esl_random.c

esl_stats.c

esl_vectorops.c

libraries

manual

generic_msv_utest

compile units

generic_msv.c

Gimple

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OBJ

generic_viterbi.c

Gimple

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hmmer.c

Gimple

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modelconfig.c

Gimple

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OBJ

p7_bg.c

Gimple

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OBJ

p7_gmx.c

Gimple

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OBJ

p7_hmm.c

Gimple

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OBJ

p7_hmmwindow.c

Gimple

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p7_profile.c

Gimple

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easel.c

Gimple

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OBJ

esl_alphabet.c

Gimple

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OBJ

esl_dirichlet.c

Gimple

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esl_fileparser.c

Gimple

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esl_getopts.c

Gimple

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OBJ

esl_gumbel.c

Gimple

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esl_hmm.c

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esl_minimizer.c

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esl_random.c

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esl_randomseq.c

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esl_stats.c

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esl_vectorops.c

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OBJ

includes

generic_msv.c

generic_viterbi.c

hmmer.c

modelconfig.c

p7_bg.c

p7_gmx.c

p7_hmm.c

p7_hmmwindow.c

p7_profile.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_stats.c

esl_vectorops.c

libraries

manual

exactmatch

compile units

exactmatch.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

includes

exactmatch.c

hmmer.c

fm_alphabet.c

fm_general.c

fm.c

easel.c

esl_getopts.c

esl_mem.c

esl_sq.c

esl_alphabet.c

libraries

manual

esl_msafile_phylip_utest

compile units

esl_msafile_phylip.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl_msafile_phylip.c

easel.c

esl_alphabet.c

esl_buffer.c

esl_getopts.c

esl_mem.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_ssi.c

esl_wuss.c

esl_keyhash.c

esl_stack.c

esl_random.c

libraries

manual

esl_tree_utest

compile units

esl_tree.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

esl_tree.c

easel.c

esl_dmatrix.c

esl_random.c

esl_stack.c

esl_vectorops.c

libraries

manual

cmscan

compile units

cmscan.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_threads.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_workqueue.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

cmscan.c

cm.c

cm_file.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_pipeline.c

cm_qdband.c

cm_tophits.c

cm_trunc.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alidisplay.c

cm_alndata.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch.c

cm_dpsearch_trunc.c

cm_dpsmall.c

cm_modelconfig.c

cm_submodel.c

cp9_dp.c

truncyk.c

errors.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_threads.c

esl_vectorops.c

esl_workqueue.c

esl_wuss.c

esl_buffer.c

libraries

manual

esl-seqrange

compile units

esl-seqrange.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl-seqrange.c

easel.c

esl_getopts.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_ssi.c

esl_alphabet.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_sq.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

esl_random.c

libraries

manual

trcyk

compile units

esl_alphabet.c

trcyk.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

esl_alphabet.c

trcyk.c

cm.c

cm_file.c

cm_modelconfig.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_submodel.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

truncyk.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_dpsmall.c

cm_pipeline.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsearch.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

esl-ssdraw

compile units

esl-ssdraw.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile2.c

Gimple

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OBJ

esl_msafile_a2m.c

Gimple

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OBJ

esl_msafile_afa.c

Gimple

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OBJ

esl_msafile_clustal.c

Gimple

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OBJ

esl_msafile_phylip.c

Gimple

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OBJ

esl_msafile_psiblast.c

Gimple

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OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

esl-ssdraw.c

easel.c

esl_alphabet.c

esl_fileparser.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile2.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_ssi.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_random.c

esl_stack.c

libraries

manual

esl_ratematrix_utest

compile units

esl_ratematrix.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl_ratematrix.c

easel.c

esl_dmatrix.c

esl_vectorops.c

esl_random.c

libraries

manual

esl_stack_utest

compile units

esl_stack.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl_stack.c

easel.c

esl_random.c

libraries

manual

esl_buffer_utest

compile units

esl_buffer.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl_buffer.c

easel.c

esl_getopts.c

esl_mem.c

esl_random.c

libraries

manual

sub_cm-test

compile units

sub_cm-test.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

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OBJ

logsum.c

Gimple

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OBJ

rnamat.c

Gimple

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OBJ

stats.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

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OBJ

cm_dpalign.c

Gimple

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OBJ

cm_dpalign_trunc.c

Gimple

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OBJ

cm_dpsearch_trunc.c

Gimple

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OBJ

cm_pipeline.c

Gimple

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OBJ

cm_p7_domaindef.c

Gimple

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OBJ

cm_p7_modelconfig_trunc.c

Gimple

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OBJ

cp9_dp.c

Gimple

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OBJ

cm_alndata.c

Gimple

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OBJ

cm_dpsearch.c

Gimple

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OBJ

cm_dpsmall.c

Gimple

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OBJ

truncyk.c

Gimple

GKD

OBJ

evalues.c

Gimple

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OBJ

generic_decoding.c

Gimple

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OBJ

generic_fwdback.c

Gimple

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OBJ

generic_null2.c

Gimple

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OBJ

generic_stotrace.c

Gimple

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OBJ

logsum.c

Gimple

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OBJ

modelconfig.c

Gimple

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OBJ

modelstats.c

Gimple

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OBJ

p7_alidisplay.c

Gimple

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OBJ

p7_bg.c

Gimple

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OBJ

p7_domaindef.c

Gimple

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OBJ

p7_gmx.c

Gimple

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OBJ

p7_hmm.c

Gimple

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OBJ

p7_hmmfile.c

Gimple

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OBJ

p7_hmmwindow.c

Gimple

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OBJ

p7_null3.c

Gimple

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OBJ

p7_pipeline.c

Gimple

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OBJ

p7_profile.c

Gimple

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OBJ

p7_spensemble.c

Gimple

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OBJ

p7_tophits.c

Gimple

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OBJ

p7_trace.c

Gimple

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OBJ

p7_msvdata.c

Gimple

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OBJ

fm_general.c

Gimple

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OBJ

fm_msv.c

Gimple

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OBJ

decoding.c

Gimple

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OBJ

fwdback.c

Gimple

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OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

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OBJ

null2.c

Gimple

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OBJ

optacc.c

Gimple

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OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

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OBJ

hmmer.c

Gimple

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OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

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OBJ

esl_mem.c

Gimple

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OBJ

esl_minimizer.c

Gimple

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OBJ

esl_msa.c

Gimple

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OBJ

esl_msafile.c

Gimple

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OBJ

esl_msafile_a2m.c

Gimple

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OBJ

esl_msafile_afa.c

Gimple

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esl_msafile_clustal.c

Gimple

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esl_msafile_phylip.c

Gimple

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esl_msafile_psiblast.c

Gimple

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OBJ

esl_msafile_selex.c

Gimple

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OBJ

esl_msafile_stockholm.c

Gimple

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OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

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OBJ

esl_sq.c

Gimple

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OBJ

esl_sqio.c

Gimple

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OBJ

esl_sqio_ascii.c

Gimple

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OBJ

esl_sqio_ncbi.c

Gimple

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OBJ

esl_sse.c

Gimple

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OBJ

esl_ssi.c

Gimple

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OBJ

esl_stack.c

Gimple

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OBJ

esl_stats.c

Gimple

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OBJ

esl_stopwatch.c

Gimple

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esl_vectorops.c

Gimple

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OBJ

esl_wuss.c

Gimple

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OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

sub_cm-test.c

cm.c

cm_file.c

cm_modelconfig.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_submodel.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_pipeline.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsearch.c

cm_dpsmall.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

esl-alistat

compile units

esl-alistat.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_distance.c

Gimple

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OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile2.c

Gimple

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OBJ

esl_msafile_a2m.c

Gimple

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OBJ

esl_msafile_afa.c

Gimple

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OBJ

esl_msafile_clustal.c

Gimple

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OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

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OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

esl-alistat.c

easel.c

esl_alphabet.c

esl_distance.c

esl_dmatrix.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile2.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_ssi.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

libraries

manual

hmmpress

compile units

hmmpress.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

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OBJ

logsum.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

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OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

hmmpress.c

errors.c

hmmer.c

modelconfig.c

p7_bg.c

p7_hmm.c

p7_hmmfile.c

p7_profile.c

io.c

p7_oprofile.c

evalues.c

modelstats.c

p7_gmx.c

p7_hmmwindow.c

fwdback.c

msvfilter.c

vitfilter.c

p7_omx.c

emit.c

generic_fwdback.c

logsum.c

p7_trace.c

ssvfilter.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl-alimerge

compile units

esl-alimerge.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile2.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

esl-alimerge.c

easel.c

esl_alphabet.c

esl_fileparser.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile2.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_ssi.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_random.c

esl_stack.c

libraries

manual

rmark-rocplot

compile units

rmark-rocplot.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

rmark-rocplot.c

easel.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_random.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl_keyhash_utest

compile units

esl_keyhash.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

includes

esl_keyhash.c

easel.c

esl_mem.c

libraries

manual

esl-construct

compile units

esl-construct.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

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OBJ

esl_msafile_selex.c

Gimple

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OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

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OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

esl-construct.c

easel.c

esl_alphabet.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_ssi.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_random.c

esl_stack.c

libraries

manual

esl_msacluster_utest

compile units

esl_msacluster.c

Gimple

GKD

OBJ

easel.c

Gimple

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OBJ

esl_alphabet.c

Gimple

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OBJ

esl_cluster.c

Gimple

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OBJ

esl_distance.c

Gimple

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esl_dmatrix.c

Gimple

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esl_getopts.c

Gimple

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esl_msa.c

Gimple

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esl_msafile.c

Gimple

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esl_msafile_a2m.c

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esl_msafile_afa.c

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esl_msafile_clustal.c

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esl_msafile_phylip.c

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esl_msafile_psiblast.c

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esl_msafile_selex.c

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esl_msafile_stockholm.c

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esl_random.c

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esl_ssi.c

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esl_wuss.c

Gimple

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esl_buffer.c

Gimple

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esl_keyhash.c

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esl_mem.c

Gimple

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OBJ

esl_stack.c

Gimple

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OBJ

includes

esl_msacluster.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_distance.c

esl_dmatrix.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_ssi.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

libraries

manual

build_utest

compile units

build.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

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OBJ

p7_hmm.c

Gimple

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OBJ

p7_profile.c

Gimple

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OBJ

p7_trace.c

Gimple

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OBJ

decoding.c

Gimple

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fwdback.c

Gimple

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OBJ

optacc.c

Gimple

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OBJ

p7_omx.c

Gimple

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OBJ

p7_oprofile.c

Gimple

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OBJ

errors.c

Gimple

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OBJ

generic_decoding.c

Gimple

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OBJ

generic_fwdback.c

Gimple

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OBJ

generic_optacc.c

Gimple

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OBJ

hmmer.c

Gimple

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logsum.c

Gimple

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OBJ

modelconfig.c

Gimple

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OBJ

easel.c

Gimple

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OBJ

esl_alphabet.c

Gimple

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OBJ

esl_dirichlet.c

Gimple

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OBJ

esl_fileparser.c

Gimple

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OBJ

esl_getopts.c

Gimple

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OBJ

esl_hmm.c

Gimple

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OBJ

esl_minimizer.c

Gimple

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OBJ

esl_msa.c

Gimple

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OBJ

esl_msafile.c

Gimple

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OBJ

esl_msafile_a2m.c

Gimple

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OBJ

esl_msafile_afa.c

Gimple

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OBJ

esl_msafile_clustal.c

Gimple

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OBJ

esl_msafile_phylip.c

Gimple

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OBJ

esl_msafile_psiblast.c

Gimple

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OBJ

esl_msafile_selex.c

Gimple

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OBJ

esl_msafile_stockholm.c

Gimple

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OBJ

esl_random.c

Gimple

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OBJ

esl_sq.c

Gimple

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OBJ

esl_sse.c

Gimple

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OBJ

esl_ssi.c

Gimple

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OBJ

esl_stats.c

Gimple

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OBJ

esl_vectorops.c

Gimple

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OBJ

esl_wuss.c

Gimple

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OBJ

esl_buffer.c

Gimple

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OBJ

esl_keyhash.c

Gimple

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OBJ

esl_mem.c

Gimple

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OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

build.c

tracealign.c

p7_alidisplay.c

p7_bg.c

p7_gmx.c

p7_hmm.c

p7_profile.c

p7_trace.c

decoding.c

fwdback.c

optacc.c

p7_omx.c

p7_oprofile.c

errors.c

generic_decoding.c

generic_fwdback.c

generic_optacc.c

hmmer.c

logsum.c

modelconfig.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_hmm.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_sq.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

libraries

manual

esl_dirichlet_utest

compile units

esl_dirichlet.c

Gimple

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OBJ

easel.c

Gimple

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OBJ

esl_fileparser.c

Gimple

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OBJ

esl_getopts.c

Gimple

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OBJ

esl_minimizer.c

Gimple

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esl_random.c

Gimple

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esl_stats.c

Gimple

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esl_vectorops.c

Gimple

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OBJ

includes

esl_dirichlet.c

easel.c

esl_fileparser.c

esl_getopts.c

esl_minimizer.c

esl_random.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl_alphabet_utest

compile units

esl_alphabet.c

Gimple

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OBJ

easel.c

Gimple

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OBJ

esl_vectorops.c

Gimple

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OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl_alphabet.c

easel.c

esl_vectorops.c

esl_random.c

libraries

manual

hmmscan

compile units

hmmscan.c

Gimple

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OBJ

errors.c

Gimple

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OBJ

hmmer.c

Gimple

GKD

OBJ

logsum.c

Gimple

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OBJ

p7_bg.c

Gimple

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p7_hmmfile.c

Gimple

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p7_pipeline.c

Gimple

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OBJ

p7_tophits.c

Gimple

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OBJ

p7_trace.c

Gimple

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OBJ

p7_msvdata.c

Gimple

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OBJ

fm_general.c

Gimple

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OBJ

fm_msv.c

Gimple

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OBJ

fwdback.c

Gimple

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OBJ

io.c

Gimple

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OBJ

msvfilter.c

Gimple

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OBJ

vitfilter.c

Gimple

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OBJ

p7_omx.c

Gimple

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OBJ

p7_oprofile.c

Gimple

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OBJ

fm.c

Gimple

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OBJ

evalues.c

Gimple

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OBJ

modelconfig.c

Gimple

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OBJ

modelstats.c

Gimple

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OBJ

tracealign.c

Gimple

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OBJ

p7_alidisplay.c

Gimple

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OBJ

p7_domaindef.c

Gimple

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OBJ

p7_gmx.c

Gimple

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OBJ

p7_hmm.c

Gimple

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OBJ

p7_hmmwindow.c

Gimple

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OBJ

p7_null3.c

Gimple

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OBJ

p7_profile.c

Gimple

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OBJ

p7_spensemble.c

Gimple

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OBJ

fm_alphabet.c

Gimple

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OBJ

decoding.c

Gimple

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OBJ

ssvfilter.c

Gimple

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OBJ

null2.c

Gimple

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OBJ

optacc.c

Gimple

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OBJ

stotrace.c

Gimple

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OBJ

emit.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

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OBJ

generic_fwdback.c

Gimple

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OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

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OBJ

esl_alphabet.c

Gimple

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OBJ

esl_cluster.c

Gimple

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OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

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OBJ

esl_keyhash.c

Gimple

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OBJ

esl_mem.c

Gimple

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OBJ

esl_minimizer.c

Gimple

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OBJ

esl_msa.c

Gimple

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OBJ

esl_msafile.c

Gimple

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OBJ

esl_msafile_a2m.c

Gimple

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esl_msafile_afa.c

Gimple

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esl_msafile_clustal.c

Gimple

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esl_msafile_phylip.c

Gimple

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esl_msafile_psiblast.c

Gimple

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esl_msafile_selex.c

Gimple

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esl_msafile_stockholm.c

Gimple

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OBJ

esl_random.c

Gimple

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OBJ

esl_randomseq.c

Gimple

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OBJ

esl_sq.c

Gimple

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OBJ

esl_sqio.c

Gimple

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OBJ

esl_sqio_ascii.c

Gimple

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esl_sqio_ncbi.c

Gimple

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esl_sse.c

Gimple

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esl_ssi.c

Gimple

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esl_stats.c

Gimple

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esl_stopwatch.c

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esl_threads.c

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esl_vectorops.c

Gimple

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esl_workqueue.c

Gimple

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esl_wuss.c

Gimple

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esl_buffer.c

Gimple

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esl_stack.c

Gimple

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OBJ

includes

hmmscan.c

errors.c

hmmer.c

logsum.c

p7_bg.c

p7_hmmfile.c

p7_pipeline.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

fwdback.c

io.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

evalues.c

modelconfig.c

modelstats.c

tracealign.c

p7_alidisplay.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmwindow.c

p7_null3.c

p7_profile.c

p7_spensemble.c

fm_alphabet.c

decoding.c

ssvfilter.c

null2.c

optacc.c

stotrace.c

emit.c

generic_decoding.c

generic_fwdback.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_stopwatch.c

esl_threads.c

esl_vectorops.c

esl_workqueue.c

esl_wuss.c

esl_buffer.c

esl_stack.c

libraries

manual

esl_sse_utest

compile units

esl_sse.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl_sse.c

easel.c

esl_getopts.c

esl_random.c

libraries

manual

cp9-test

compile units

cp9-test.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

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OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

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OBJ

cp9_mx.c

Gimple

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OBJ

cp9_trace.c

Gimple

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OBJ

alphabet.c

Gimple

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OBJ

display.c

Gimple

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OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

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OBJ

logsum.c

Gimple

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OBJ

rnamat.c

Gimple

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OBJ

stats.c

Gimple

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OBJ

cm_alidisplay.c

Gimple

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OBJ

cm_dpalign.c

Gimple

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OBJ

cm_dpalign_trunc.c

Gimple

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OBJ

cm_dpsearch_trunc.c

Gimple

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OBJ

cm_modelconfig.c

Gimple

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OBJ

cm_pipeline.c

Gimple

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OBJ

cm_submodel.c

Gimple

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OBJ

cm_p7_domaindef.c

Gimple

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OBJ

cm_p7_modelconfig_trunc.c

Gimple

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OBJ

cp9_dp.c

Gimple

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OBJ

cm_alndata.c

Gimple

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cm_dpsearch.c

Gimple

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cm_dpsmall.c

Gimple

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OBJ

truncyk.c

Gimple

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OBJ

evalues.c

Gimple

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OBJ

generic_decoding.c

Gimple

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OBJ

generic_fwdback.c

Gimple

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OBJ

generic_null2.c

Gimple

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OBJ

generic_stotrace.c

Gimple

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OBJ

logsum.c

Gimple

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OBJ

modelconfig.c

Gimple

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OBJ

modelstats.c

Gimple

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OBJ

p7_alidisplay.c

Gimple

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OBJ

p7_bg.c

Gimple

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OBJ

p7_domaindef.c

Gimple

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OBJ

p7_gmx.c

Gimple

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OBJ

p7_hmm.c

Gimple

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OBJ

p7_hmmfile.c

Gimple

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OBJ

p7_hmmwindow.c

Gimple

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OBJ

p7_null3.c

Gimple

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OBJ

p7_pipeline.c

Gimple

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OBJ

p7_profile.c

Gimple

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OBJ

p7_spensemble.c

Gimple

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OBJ

p7_tophits.c

Gimple

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OBJ

p7_trace.c

Gimple

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OBJ

p7_msvdata.c

Gimple

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OBJ

fm_general.c

Gimple

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OBJ

fm_msv.c

Gimple

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OBJ

decoding.c

Gimple

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OBJ

fwdback.c

Gimple

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OBJ

io.c

Gimple

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OBJ

msvfilter.c

Gimple

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OBJ

null2.c

Gimple

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OBJ

optacc.c

Gimple

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OBJ

stotrace.c

Gimple

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OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

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OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

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OBJ

hmmer.c

Gimple

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OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

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OBJ

esl_keyhash.c

Gimple

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OBJ

esl_mem.c

Gimple

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OBJ

esl_minimizer.c

Gimple

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OBJ

esl_msa.c

Gimple

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OBJ

esl_msafile.c

Gimple

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OBJ

esl_msafile_a2m.c

Gimple

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esl_msafile_afa.c

Gimple

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esl_msafile_clustal.c

Gimple

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esl_msafile_phylip.c

Gimple

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esl_msafile_psiblast.c

Gimple

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esl_msafile_selex.c

Gimple

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esl_msafile_stockholm.c

Gimple

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esl_random.c

Gimple

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esl_randomseq.c

Gimple

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esl_sq.c

Gimple

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OBJ

esl_sqio.c

Gimple

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OBJ

esl_sqio_ascii.c

Gimple

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OBJ

esl_sqio_ncbi.c

Gimple

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OBJ

esl_sse.c

Gimple

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OBJ

esl_ssi.c

Gimple

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OBJ

esl_stack.c

Gimple

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OBJ

esl_stats.c

Gimple

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OBJ

esl_stopwatch.c

Gimple

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esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

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OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

cp9-test.c

cm.c

cm_file.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_modelconfig.c

cm_pipeline.c

cm_submodel.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsearch.c

cm_dpsmall.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

stotrace_utest

compile units

stotrace.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

generic_viterbi.c

Gimple

GKD

OBJ

generic_vtrace.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

fwdback.c

Gimple

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OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

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OBJ

easel.c

Gimple

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OBJ

esl_alphabet.c

Gimple

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OBJ

esl_dirichlet.c

Gimple

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OBJ

esl_fileparser.c

Gimple

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OBJ

esl_getopts.c

Gimple

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OBJ

esl_gumbel.c

Gimple

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OBJ

esl_hmm.c

Gimple

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OBJ

esl_minimizer.c

Gimple

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OBJ

esl_random.c

Gimple

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OBJ

esl_randomseq.c

Gimple

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OBJ

esl_sq.c

Gimple

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OBJ

esl_sse.c

Gimple

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OBJ

esl_stats.c

Gimple

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OBJ

esl_vectorops.c

Gimple

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OBJ

includes

stotrace.c

emit.c

generic_viterbi.c

generic_vtrace.c

hmmer.c

modelconfig.c

p7_bg.c

p7_gmx.c

p7_hmm.c

p7_hmmwindow.c

p7_profile.c

p7_trace.c

fwdback.c

p7_omx.c

p7_oprofile.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sse.c

esl_stats.c

esl_vectorops.c

libraries

manual

p7_profile_utest

compile units

p7_profile.c

Gimple

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OBJ

errors.c

Gimple

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OBJ

hmmer.c

Gimple

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OBJ

modelconfig.c

Gimple

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OBJ

p7_bg.c

Gimple

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OBJ

p7_hmm.c

Gimple

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OBJ

easel.c

Gimple

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OBJ

esl_alphabet.c

Gimple

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OBJ

esl_dirichlet.c

Gimple

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OBJ

esl_fileparser.c

Gimple

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OBJ

esl_getopts.c

Gimple

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OBJ

esl_hmm.c

Gimple

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OBJ

esl_minimizer.c

Gimple

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OBJ

esl_random.c

Gimple

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OBJ

esl_stats.c

Gimple

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OBJ

esl_vectorops.c

Gimple

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OBJ

includes

p7_profile.c

errors.c

hmmer.c

modelconfig.c

p7_bg.c

p7_hmm.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl_msafile_selex_utest

compile units

esl_msafile_selex.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

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OBJ

esl_buffer.c

Gimple

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OBJ

esl_getopts.c

Gimple

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OBJ

esl_mem.c

Gimple

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OBJ

esl_msa.c

Gimple

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OBJ

esl_msafile.c

Gimple

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OBJ

esl_msafile_a2m.c

Gimple

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OBJ

esl_msafile_afa.c

Gimple

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esl_msafile_clustal.c

Gimple

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esl_msafile_phylip.c

Gimple

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esl_msafile_psiblast.c

Gimple

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OBJ

esl_msafile_stockholm.c

Gimple

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esl_ssi.c

Gimple

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OBJ

esl_wuss.c

Gimple

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esl_keyhash.c

Gimple

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esl_stack.c

Gimple

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OBJ

esl_random.c

Gimple

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OBJ

includes

esl_msafile_selex.c

easel.c

esl_alphabet.c

esl_buffer.c

esl_getopts.c

esl_mem.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_stockholm.c

esl_ssi.c

esl_wuss.c

esl_keyhash.c

esl_stack.c

esl_random.c

libraries

manual

phmmer

compile units

phmmer.c

Gimple

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OBJ

errors.c

Gimple

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OBJ

hmmer.c

Gimple

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OBJ

logsum.c

Gimple

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OBJ

p7_bg.c

Gimple

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OBJ

p7_builder.c

Gimple

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OBJ

p7_hmm.c

Gimple

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p7_pipeline.c

Gimple

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OBJ

p7_prior.c

Gimple

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OBJ

p7_profile.c

Gimple

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OBJ

p7_tophits.c

Gimple

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OBJ

p7_trace.c

Gimple

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OBJ

p7_msvdata.c

Gimple

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fm_general.c

Gimple

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fm_msv.c

Gimple

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fwdback.c

Gimple

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io.c

Gimple

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msvfilter.c

Gimple

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OBJ

vitfilter.c

Gimple

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OBJ

p7_omx.c

Gimple

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p7_oprofile.c

Gimple

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fm.c

Gimple

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build.c

Gimple

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OBJ

evalues.c

Gimple

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OBJ

eweight.c

Gimple

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OBJ

modelconfig.c

Gimple

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modelstats.c

Gimple

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OBJ

seqmodel.c

Gimple

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tracealign.c

Gimple

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p7_alidisplay.c

Gimple

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p7_domaindef.c

Gimple

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p7_gmx.c

Gimple

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p7_hmmwindow.c

Gimple

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p7_null3.c

Gimple

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OBJ

p7_spensemble.c

Gimple

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OBJ

fm_alphabet.c

Gimple

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OBJ

decoding.c

Gimple

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ssvfilter.c

Gimple

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OBJ

null2.c

Gimple

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OBJ

optacc.c

Gimple

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OBJ

stotrace.c

Gimple

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OBJ

emit.c

Gimple

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OBJ

generic_decoding.c

Gimple

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OBJ

generic_fwdback.c

Gimple

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OBJ

generic_optacc.c

Gimple

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OBJ

easel.c

Gimple

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OBJ

esl_alphabet.c

Gimple

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OBJ

esl_cluster.c

Gimple

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OBJ

esl_dirichlet.c

Gimple

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OBJ

esl_dmatrix.c

Gimple

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OBJ

esl_exponential.c

Gimple

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OBJ

esl_fileparser.c

Gimple

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OBJ

esl_getopts.c

Gimple

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OBJ

esl_gumbel.c

Gimple

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OBJ

esl_hmm.c

Gimple

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OBJ

esl_keyhash.c

Gimple

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OBJ

esl_mem.c

Gimple

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OBJ

esl_minimizer.c

Gimple

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OBJ

esl_msa.c

Gimple

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OBJ

esl_msacluster.c

Gimple

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OBJ

esl_msafile.c

Gimple

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OBJ

esl_msafile_a2m.c

Gimple

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esl_msafile_afa.c

Gimple

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esl_msafile_clustal.c

Gimple

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esl_msafile_phylip.c

Gimple

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OBJ

esl_msafile_psiblast.c

Gimple

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OBJ

esl_msafile_selex.c

Gimple

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OBJ

esl_msafile_stockholm.c

Gimple

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OBJ

esl_msaweight.c

Gimple

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OBJ

esl_random.c

Gimple

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OBJ

esl_randomseq.c

Gimple

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OBJ

esl_rootfinder.c

Gimple

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esl_scorematrix.c

Gimple

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esl_sq.c

Gimple

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esl_sqio.c

Gimple

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esl_sqio_ascii.c

Gimple

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esl_sqio_ncbi.c

Gimple

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esl_sse.c

Gimple

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esl_ssi.c

Gimple

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esl_stats.c

Gimple

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esl_stopwatch.c

Gimple

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esl_threads.c

Gimple

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esl_tree.c

Gimple

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esl_vectorops.c

Gimple

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esl_workqueue.c

Gimple

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esl_wuss.c

Gimple

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esl_buffer.c

Gimple

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esl_distance.c

Gimple

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esl_ratematrix.c

Gimple

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esl_stack.c

Gimple

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OBJ

includes

phmmer.c

errors.c

hmmer.c

logsum.c

p7_bg.c

p7_builder.c

p7_hmm.c

p7_pipeline.c

p7_prior.c

p7_profile.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

fwdback.c

io.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

build.c

evalues.c

eweight.c

modelconfig.c

modelstats.c

seqmodel.c

tracealign.c

p7_alidisplay.c

p7_domaindef.c

p7_gmx.c

p7_hmmwindow.c

p7_null3.c

p7_spensemble.c

fm_alphabet.c

decoding.c

ssvfilter.c

null2.c

optacc.c

stotrace.c

emit.c

generic_decoding.c

generic_fwdback.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_dmatrix.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msacluster.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_msaweight.c

esl_random.c

esl_randomseq.c

esl_rootfinder.c

esl_scorematrix.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_stopwatch.c

esl_threads.c

esl_tree.c

esl_vectorops.c

esl_workqueue.c

esl_wuss.c

esl_buffer.c

esl_distance.c

esl_ratematrix.c

esl_stack.c

libraries

manual

p7_tophits_utest

compile units

p7_tophits.c

Gimple

GKD

OBJ

hmmer.c

Gimple

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OBJ

tracealign.c

Gimple

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OBJ

p7_alidisplay.c

Gimple

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OBJ

p7_bg.c

Gimple

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OBJ

p7_gmx.c

Gimple

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OBJ

p7_pipeline.c

Gimple

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OBJ

p7_profile.c

Gimple

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OBJ

p7_trace.c

Gimple

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OBJ

p7_msvdata.c

Gimple

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OBJ

fm_general.c

Gimple

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OBJ

fm_msv.c

Gimple

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OBJ

decoding.c

Gimple

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OBJ

fwdback.c

Gimple

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OBJ

io.c

Gimple

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OBJ

msvfilter.c

Gimple

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OBJ

optacc.c

Gimple

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OBJ

vitfilter.c

Gimple

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OBJ

p7_omx.c

Gimple

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OBJ

p7_oprofile.c

Gimple

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OBJ

fm.c

Gimple

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OBJ

errors.c

Gimple

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OBJ

generic_decoding.c

Gimple

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OBJ

generic_fwdback.c

Gimple

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OBJ

generic_optacc.c

Gimple

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OBJ

logsum.c

Gimple

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OBJ

modelconfig.c

Gimple

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OBJ

p7_domaindef.c

Gimple

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OBJ

p7_hmm.c

Gimple

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OBJ

p7_hmmwindow.c

Gimple

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OBJ

p7_null3.c

Gimple

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OBJ

p7_spensemble.c

Gimple

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OBJ

fm_alphabet.c

Gimple

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OBJ

ssvfilter.c

Gimple

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OBJ

null2.c

Gimple

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OBJ

stotrace.c

Gimple

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OBJ

easel.c

Gimple

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OBJ

esl_alphabet.c

Gimple

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OBJ

esl_cluster.c

Gimple

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OBJ

esl_dirichlet.c

Gimple

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OBJ

esl_exponential.c

Gimple

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OBJ

esl_fileparser.c

Gimple

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OBJ

esl_getopts.c

Gimple

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OBJ

esl_gumbel.c

Gimple

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OBJ

esl_hmm.c

Gimple

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OBJ

esl_keyhash.c

Gimple

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OBJ

esl_mem.c

Gimple

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OBJ

esl_minimizer.c

Gimple

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OBJ

esl_msa.c

Gimple

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OBJ

esl_msafile.c

Gimple

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OBJ

esl_msafile_a2m.c

Gimple

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esl_msafile_afa.c

Gimple

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esl_msafile_clustal.c

Gimple

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esl_msafile_phylip.c

Gimple

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esl_msafile_psiblast.c

Gimple

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OBJ

esl_msafile_selex.c

Gimple

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OBJ

esl_msafile_stockholm.c

Gimple

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OBJ

esl_random.c

Gimple

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OBJ

esl_sq.c

Gimple

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OBJ

esl_sse.c

Gimple

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OBJ

esl_ssi.c

Gimple

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OBJ

esl_stats.c

Gimple

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OBJ

esl_stopwatch.c

Gimple

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OBJ

esl_vectorops.c

Gimple

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esl_wuss.c

Gimple

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esl_buffer.c

Gimple

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esl_stack.c

Gimple

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OBJ

includes

p7_tophits.c

hmmer.c

tracealign.c

p7_alidisplay.c

p7_bg.c

p7_gmx.c

p7_pipeline.c

p7_profile.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

optacc.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

errors.c

generic_decoding.c

generic_fwdback.c

generic_optacc.c

logsum.c

modelconfig.c

p7_domaindef.c

p7_hmm.c

p7_hmmwindow.c

p7_null3.c

p7_spensemble.c

fm_alphabet.c

ssvfilter.c

null2.c

stotrace.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_sq.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_stack.c

libraries

manual

cmbuild

compile units

cmbuild.c

Gimple

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OBJ

cm.c

Gimple

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OBJ

cm_alndata.c

Gimple

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OBJ

cm_dpalign.c

Gimple

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OBJ

cm_dpalign_trunc.c

Gimple

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cm_dpsmall.c

Gimple

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OBJ

cm_file.c

Gimple

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OBJ

cm_modelconfig.c

Gimple

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OBJ

cm_modelmaker.c

Gimple

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OBJ

cm_mx.c

Gimple

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OBJ

cm_parsetree.c

Gimple

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OBJ

cm_pipeline.c

Gimple

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OBJ

cm_qdband.c

Gimple

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cm_submodel.c

Gimple

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cm_tophits.c

Gimple

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cm_trunc.c

Gimple

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OBJ

cm_p7_domaindef.c

Gimple

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cm_p7_modelconfig_trunc.c

Gimple

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cm_p7_modelmaker.c

Gimple

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OBJ

cp9.c

Gimple

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cp9_modelmaker.c

Gimple

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OBJ

cp9_mx.c

Gimple

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OBJ

cp9_trace.c

Gimple

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OBJ

alphabet.c

Gimple

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OBJ

display.c

Gimple

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OBJ

errors.c

Gimple

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eweight.c

Gimple

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OBJ

hmmband.c

Gimple

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OBJ

logsum.c

Gimple

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OBJ

prior.c

Gimple

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OBJ

rnamat.c

Gimple

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OBJ

stats.c

Gimple

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OBJ

truncyk.c

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cm_alidisplay.c

Gimple

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cm_dpsearch.c

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cm_dpsearch_trunc.c

Gimple

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cp9_dp.c

Gimple

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evalues.c

Gimple

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generic_decoding.c

Gimple

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OBJ

generic_fwdback.c

Gimple

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OBJ

generic_null2.c

Gimple

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OBJ

generic_stotrace.c

Gimple

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OBJ

logsum.c

Gimple

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OBJ

modelconfig.c

Gimple

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OBJ

modelstats.c

Gimple

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OBJ

p7_alidisplay.c

Gimple

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OBJ

p7_bg.c

Gimple

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OBJ

p7_builder.c

Gimple

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OBJ

p7_domaindef.c

Gimple

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OBJ

p7_gmx.c

Gimple

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OBJ

p7_hmm.c

Gimple

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OBJ

p7_hmmfile.c

Gimple

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p7_hmmwindow.c

Gimple

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p7_null3.c

Gimple

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OBJ

p7_pipeline.c

Gimple

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p7_prior.c

Gimple

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p7_profile.c

Gimple

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p7_spensemble.c

Gimple

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OBJ

p7_tophits.c

Gimple

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OBJ

p7_trace.c

Gimple

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p7_msvdata.c

Gimple

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OBJ

fm_general.c

Gimple

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OBJ

fm_msv.c

Gimple

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OBJ

decoding.c

Gimple

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OBJ

fwdback.c

Gimple

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OBJ

io.c

Gimple

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OBJ

msvfilter.c

Gimple

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OBJ

null2.c

Gimple

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OBJ

optacc.c

Gimple

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OBJ

stotrace.c

Gimple

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OBJ

vitfilter.c

Gimple

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OBJ

p7_omx.c

Gimple

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p7_oprofile.c

Gimple

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fm.c

Gimple

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OBJ

build.c

Gimple

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OBJ

emit.c

Gimple

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OBJ

errors.c

Gimple

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OBJ

eweight.c

Gimple

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OBJ

hmmer.c

Gimple

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OBJ

seqmodel.c

Gimple

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OBJ

tracealign.c

Gimple

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OBJ

fm_alphabet.c

Gimple

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OBJ

ssvfilter.c

Gimple

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OBJ

generic_optacc.c

Gimple

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OBJ

easel.c

Gimple

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OBJ

esl_alphabet.c

Gimple

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OBJ

esl_cluster.c

Gimple

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OBJ

esl_dirichlet.c

Gimple

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OBJ

esl_distance.c

Gimple

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OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

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OBJ

esl_fileparser.c

Gimple

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OBJ

esl_getopts.c

Gimple

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OBJ

esl_gumbel.c

Gimple

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OBJ

esl_hmm.c

Gimple

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OBJ

esl_keyhash.c

Gimple

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OBJ

esl_mem.c

Gimple

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OBJ

esl_minimizer.c

Gimple

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OBJ

esl_msa.c

Gimple

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OBJ

esl_msacluster.c

Gimple

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OBJ

esl_msafile.c

Gimple

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OBJ

esl_msafile_a2m.c

Gimple

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OBJ

esl_msafile_afa.c

Gimple

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OBJ

esl_msafile_clustal.c

Gimple

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OBJ

esl_msafile_phylip.c

Gimple

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OBJ

esl_msafile_psiblast.c

Gimple

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OBJ

esl_msafile_selex.c

Gimple

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esl_msafile_stockholm.c

Gimple

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esl_msaweight.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_rootfinder.c

Gimple

GKD

OBJ

esl_scorematrix.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_tree.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_ratematrix.c

Gimple

GKD

OBJ

includes

cmbuild.c

cm.c

cm_alndata.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsmall.c

cm_file.c

cm_modelconfig.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_pipeline.c

cm_qdband.c

cm_submodel.c

cm_tophits.c

cm_trunc.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

eweight.c

hmmband.c

logsum.c

prior.c

rnamat.c

stats.c

truncyk.c

cm_alidisplay.c

cm_dpsearch.c

cm_dpsearch_trunc.c

cp9_dp.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_builder.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_prior.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

build.c

emit.c

errors.c

eweight.c

hmmer.c

seqmodel.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_distance.c

esl_dmatrix.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msacluster.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_msaweight.c

esl_random.c

esl_randomseq.c

esl_rootfinder.c

esl_scorematrix.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_tree.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_ratematrix.c

libraries

manual

hmmc2

compile units

hmmc2.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmdutils.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

hmmc2.c

errors.c

hmmdutils.c

p7_hmm.c

p7_pipeline.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

fwdback.c

io.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

logsum.c

modelconfig.c

tracealign.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmmwindow.c

p7_null3.c

p7_profile.c

p7_spensemble.c

fm_alphabet.c

decoding.c

ssvfilter.c

null2.c

optacc.c

stotrace.c

generic_decoding.c

generic_fwdback.c

generic_optacc.c

hmmer.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_sq.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_stack.c

libraries

manual

bandcyk-truncation-test

compile units

bandcyk-truncation-test.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

bandcyk-truncation-test.c

cm.c

cm_file.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_modelconfig.c

cm_pipeline.c

cm_submodel.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsearch.c

cm_dpsmall.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

hmmer_utest

compile units

hmmer.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

includes

hmmer.c

easel.c

esl_alphabet.c

esl_getopts.c

libraries

manual

esl_regexp_utest

compile units

esl_regexp.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

includes

esl_regexp.c

easel.c

libraries

manual

esl-weight

compile units

esl-weight.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_msaweight.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_tree.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_distance.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_msacluster.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

includes

esl-weight.c

easel.c

esl_alphabet.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_msaweight.c

esl_ssi.c

esl_tree.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_distance.c

esl_dmatrix.c

esl_keyhash.c

esl_mem.c

esl_msacluster.c

esl_random.c

esl_stack.c

esl_cluster.c

libraries

manual

cmcalibrate

compile units

cmcalibrate.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_histogram.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_threads.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_workqueue.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

cmcalibrate.c

cm.c

cm_dpsearch.c

cm_file.c

cm_modelconfig.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_submodel.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_pipeline.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsmall.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_histogram.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_threads.c

esl_vectorops.c

esl_workqueue.c

esl_wuss.c

esl_buffer.c

libraries

manual

esl_randomseq_utest

compile units

esl_randomseq.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

esl_randomseq.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_minimizer.c

esl_random.c

esl_stats.c

esl_vectorops.c

libraries

manual

hmmsim

compile units

hmmsim.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_msv.c

Gimple

GKD

OBJ

generic_viterbi.c

Gimple

GKD

OBJ

generic_vtrace.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_histogram.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

hmmsim.c

errors.c

evalues.c

generic_fwdback.c

generic_msv.c

generic_viterbi.c

generic_vtrace.c

hmmer.c

logsum.c

modelconfig.c

modelstats.c

p7_bg.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_profile.c

p7_trace.c

fwdback.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

emit.c

ssvfilter.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_histogram.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

libraries

manual

esl-seqstat

compile units

esl-seqstat.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

esl-seqstat.c

easel.c

esl_alphabet.c

esl_getopts.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_ssi.c

esl_vectorops.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

libraries

manual

cmalign

compile units

cmalign.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile2.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_threads.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_workqueue.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

cmalign.c

cm.c

cm_alndata.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsmall.c

cm_file.c

cm_modelconfig.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_pipeline.c

cm_qdband.c

cm_submodel.c

cm_tophits.c

cm_trunc.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

truncyk.c

cm_alidisplay.c

cm_dpsearch.c

cm_dpsearch_trunc.c

cp9_dp.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile2.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_threads.c

esl_vectorops.c

esl_workqueue.c

esl_wuss.c

esl_buffer.c

libraries

manual

p7_bg_utest

compile units

p7_bg.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

p7_bg.c

hmmer.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl_stretchexp_utest

compile units

esl_stretchexp.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_histogram.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

esl_stretchexp.c

easel.c

esl_getopts.c

esl_histogram.c

esl_minimizer.c

esl_random.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl_msaweight_utest

compile units

esl_msaweight.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_distance.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msacluster.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_tree.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

esl_msaweight.c

easel.c

esl_alphabet.c

esl_distance.c

esl_dmatrix.c

esl_msa.c

esl_msacluster.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_ssi.c

esl_tree.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_cluster.c

esl_keyhash.c

esl_mem.c

esl_stack.c

libraries

manual

modelconfig_utest

compile units

modelconfig.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

modelconfig.c

p7_bg.c

p7_hmm.c

p7_profile.c

hmmer.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl-histplot

compile units

esl-histplot.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_histogram.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

esl-histplot.c

easel.c

esl_exponential.c

esl_getopts.c

esl_gumbel.c

esl_histogram.c

esl_minimizer.c

esl_random.c

esl_stats.c

esl_vectorops.c

libraries

manual

generic_fwdback_utest

compile units

generic_fwdback.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

generic_viterbi.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

generic_fwdback.c

emit.c

generic_viterbi.c

hmmer.c

logsum.c

modelconfig.c

p7_bg.c

p7_gmx.c

p7_hmm.c

p7_hmmwindow.c

p7_profile.c

p7_trace.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl-afetch

compile units

esl-afetch.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl-afetch.c

easel.c

esl_fileparser.c

esl_getopts.c

esl_keyhash.c

esl_mem.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_ssi.c

esl_wuss.c

esl_alphabet.c

esl_buffer.c

esl_stack.c

esl_random.c

libraries

manual

cmpress

compile units

cmpress.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

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OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

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OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

cmpress.c

cm.c

cm_file.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_modelconfig.c

cm_pipeline.c

cm_submodel.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsearch.c

cm_dpsmall.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

fwdback_utest

compile units

fwdback.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

fwdback.c

generic_fwdback.c

hmmer.c

logsum.c

p7_bg.c

p7_gmx.c

p7_hmm.c

p7_profile.c

p7_omx.c

p7_oprofile.c

modelconfig.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_sse.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl-alimask

compile units

esl-alimask.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile2.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_regexp.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

esl-alimask.c

easel.c

esl_alphabet.c

esl_fileparser.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile2.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_regexp.c

esl_ssi.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_random.c

esl_stack.c

libraries

manual

esl_mem_utest

compile units

esl_mem.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

includes

esl_mem.c

easel.c

esl_getopts.c

libraries

manual

esl-sfetch

compile units

esl-sfetch.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_regexp.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

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OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

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OBJ

esl_msafile_afa.c

Gimple

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OBJ

esl_msafile_clustal.c

Gimple

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OBJ

esl_msafile_phylip.c

Gimple

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OBJ

esl_msafile_psiblast.c

Gimple

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OBJ

esl_msafile_selex.c

Gimple

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OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl-sfetch.c

easel.c

esl_fileparser.c

esl_getopts.c

esl_keyhash.c

esl_mem.c

esl_regexp.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_ssi.c

esl_alphabet.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_wuss.c

esl_buffer.c

esl_stack.c

esl_random.c

libraries

manual

esl_weibull_utest

compile units

esl_weibull.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_histogram.c

Gimple

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OBJ

esl_minimizer.c

Gimple

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OBJ

esl_random.c

Gimple

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OBJ

esl_stats.c

Gimple

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OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

esl_weibull.c

easel.c

esl_histogram.c

esl_minimizer.c

esl_random.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl_msafile_clustal_utest

compile units

esl_msafile_clustal.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

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OBJ

esl_buffer.c

Gimple

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OBJ

esl_getopts.c

Gimple

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OBJ

esl_mem.c

Gimple

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OBJ

esl_msa.c

Gimple

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OBJ

esl_msafile.c

Gimple

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OBJ

esl_msafile_a2m.c

Gimple

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esl_msafile_afa.c

Gimple

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esl_msafile_phylip.c

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esl_msafile_psiblast.c

Gimple

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esl_msafile_selex.c

Gimple

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OBJ

esl_msafile_stockholm.c

Gimple

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OBJ

esl_ssi.c

Gimple

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OBJ

esl_wuss.c

Gimple

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OBJ

esl_keyhash.c

Gimple

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OBJ

esl_stack.c

Gimple

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OBJ

esl_random.c

Gimple

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OBJ

includes

esl_msafile_clustal.c

easel.c

esl_alphabet.c

esl_buffer.c

esl_getopts.c

esl_mem.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_ssi.c

esl_wuss.c

esl_keyhash.c

esl_stack.c

esl_random.c

libraries

manual

p7_hmmfile_utest

compile units

p7_hmmfile.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

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OBJ

p7_bg.c

Gimple

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OBJ

p7_gmx.c

Gimple

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OBJ

p7_hmm.c

Gimple

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OBJ

p7_hmmwindow.c

Gimple

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OBJ

p7_profile.c

Gimple

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OBJ

fwdback.c

Gimple

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OBJ

msvfilter.c

Gimple

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OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

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OBJ

p7_oprofile.c

Gimple

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OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

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OBJ

generic_fwdback.c

Gimple

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OBJ

hmmer.c

Gimple

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OBJ

logsum.c

Gimple

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OBJ

p7_trace.c

Gimple

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OBJ

ssvfilter.c

Gimple

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OBJ

easel.c

Gimple

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OBJ

esl_alphabet.c

Gimple

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OBJ

esl_dirichlet.c

Gimple

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OBJ

esl_fileparser.c

Gimple

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OBJ

esl_getopts.c

Gimple

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OBJ

esl_gumbel.c

Gimple

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OBJ

esl_hmm.c

Gimple

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OBJ

esl_minimizer.c

Gimple

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OBJ

esl_random.c

Gimple

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OBJ

esl_randomseq.c

Gimple

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OBJ

esl_sq.c

Gimple

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OBJ

esl_sse.c

Gimple

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esl_ssi.c

Gimple

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OBJ

esl_stats.c

Gimple

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OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

p7_hmmfile.c

evalues.c

modelconfig.c

modelstats.c

p7_bg.c

p7_gmx.c

p7_hmm.c

p7_hmmwindow.c

p7_profile.c

fwdback.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

emit.c

errors.c

generic_fwdback.c

hmmer.c

logsum.c

p7_trace.c

ssvfilter.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl-selectn

compile units

esl-selectn.c

Gimple

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OBJ

easel.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl-selectn.c

easel.c

esl_getopts.c

esl_random.c

libraries

manual

esl-cluster

compile units

esl-cluster.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

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OBJ

esl_getopts.c

Gimple

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esl_keyhash.c

Gimple

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OBJ

esl_mem.c

Gimple

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OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_tree.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl-cluster.c

easel.c

esl_dmatrix.c

esl_fileparser.c

esl_getopts.c

esl_keyhash.c

esl_mem.c

esl_stack.c

esl_tree.c

esl_vectorops.c

esl_random.c

libraries

manual

p7_gmx_utest

compile units

p7_gmx.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

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OBJ

p7_profile.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

p7_gmx.c

generic_fwdback.c

hmmer.c

logsum.c

modelconfig.c

p7_bg.c

p7_hmm.c

p7_profile.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl_msafile_stockholm_utest

compile units

esl_msafile_stockholm.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

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OBJ

esl_getopts.c

Gimple

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OBJ

esl_keyhash.c

Gimple

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OBJ

esl_mem.c

Gimple

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OBJ

esl_msa.c

Gimple

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OBJ

esl_msafile.c

Gimple

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OBJ

esl_msafile_a2m.c

Gimple

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OBJ

esl_msafile_afa.c

Gimple

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esl_msafile_clustal.c

Gimple

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OBJ

esl_msafile_phylip.c

Gimple

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OBJ

esl_msafile_psiblast.c

Gimple

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esl_msafile_selex.c

Gimple

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OBJ

esl_ssi.c

Gimple

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OBJ

esl_wuss.c

Gimple

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OBJ

esl_stack.c

Gimple

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OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl_msafile_stockholm.c

easel.c

esl_alphabet.c

esl_buffer.c

esl_getopts.c

esl_keyhash.c

esl_mem.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_ssi.c

esl_wuss.c

esl_stack.c

esl_random.c

libraries

manual

esl_stats_utest

compile units

esl_stats.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

includes

esl_stats.c

easel.c

esl_getopts.c

esl_random.c

esl_stopwatch.c

libraries

manual

hmmlogo

compile units

hmmlogo.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

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OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

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OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

hmmlogo.c

errors.c

hmmer.c

p7_bg.c

p7_hmmfile.c

evalues.c

modelconfig.c

modelstats.c

p7_gmx.c

p7_hmm.c

p7_hmmwindow.c

p7_profile.c

fwdback.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

emit.c

generic_fwdback.c

logsum.c

p7_trace.c

ssvfilter.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl-alimanip

compile units

esl-alimanip.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

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OBJ

esl_distance.c

Gimple

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OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

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OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

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OBJ

esl_msafile2.c

Gimple

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OBJ

esl_msafile_a2m.c

Gimple

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OBJ

esl_msafile_afa.c

Gimple

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OBJ

esl_msafile_clustal.c

Gimple

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OBJ

esl_msafile_phylip.c

Gimple

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OBJ

esl_msafile_psiblast.c

Gimple

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OBJ

esl_msafile_selex.c

Gimple

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OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_tree.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

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OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

esl-alimanip.c

easel.c

esl_alphabet.c

esl_distance.c

esl_dmatrix.c

esl_fileparser.c

esl_getopts.c

esl_keyhash.c

esl_mem.c

esl_msa.c

esl_msafile.c

esl_msafile2.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_ssi.c

esl_stack.c

esl_tree.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

esl_rootfinder_utest

compile units

esl_rootfinder.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

includes

esl_rootfinder.c

easel.c

libraries

manual

logsum_utest

compile units

logsum.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

logsum.c

hmmer.c

easel.c

esl_getopts.c

esl_random.c

libraries

manual

itest_brute

compile units

itest_brute.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

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OBJ

cm_qdband.c

Gimple

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OBJ

cm_submodel.c

Gimple

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OBJ

cm_tophits.c

Gimple

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OBJ

cm_trunc.c

Gimple

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OBJ

cm_p7_modelmaker.c

Gimple

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OBJ

cp9.c

Gimple

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OBJ

cp9_modelmaker.c

Gimple

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OBJ

cp9_mx.c

Gimple

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OBJ

cp9_trace.c

Gimple

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OBJ

alphabet.c

Gimple

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OBJ

display.c

Gimple

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OBJ

errors.c

Gimple

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OBJ

hmmband.c

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OBJ

logsum.c

Gimple

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OBJ

rnamat.c

Gimple

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stats.c

Gimple

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OBJ

cm_alidisplay.c

Gimple

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OBJ

cm_dpsearch_trunc.c

Gimple

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OBJ

cm_file.c

Gimple

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OBJ

cm_modelconfig.c

Gimple

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OBJ

cm_pipeline.c

Gimple

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OBJ

cm_p7_domaindef.c

Gimple

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OBJ

cm_p7_modelconfig_trunc.c

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cp9_dp.c

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cm_alndata.c

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cm_dpsearch.c

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cm_dpsmall.c

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truncyk.c

Gimple

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OBJ

evalues.c

Gimple

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OBJ

generic_decoding.c

Gimple

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OBJ

generic_fwdback.c

Gimple

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OBJ

generic_null2.c

Gimple

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OBJ

generic_stotrace.c

Gimple

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OBJ

logsum.c

Gimple

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OBJ

modelconfig.c

Gimple

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OBJ

modelstats.c

Gimple

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OBJ

p7_alidisplay.c

Gimple

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OBJ

p7_bg.c

Gimple

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OBJ

p7_domaindef.c

Gimple

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OBJ

p7_gmx.c

Gimple

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OBJ

p7_hmm.c

Gimple

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OBJ

p7_hmmfile.c

Gimple

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OBJ

p7_hmmwindow.c

Gimple

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OBJ

p7_null3.c

Gimple

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OBJ

p7_pipeline.c

Gimple

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p7_profile.c

Gimple

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OBJ

p7_spensemble.c

Gimple

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p7_tophits.c

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OBJ

p7_trace.c

Gimple

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p7_msvdata.c

Gimple

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fm_general.c

Gimple

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OBJ

fm_msv.c

Gimple

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decoding.c

Gimple

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fwdback.c

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io.c

Gimple

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OBJ

msvfilter.c

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OBJ

null2.c

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optacc.c

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OBJ

stotrace.c

Gimple

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OBJ

vitfilter.c

Gimple

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OBJ

p7_omx.c

Gimple

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OBJ

p7_oprofile.c

Gimple

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OBJ

fm.c

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OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

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OBJ

hmmer.c

Gimple

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OBJ

tracealign.c

Gimple

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OBJ

fm_alphabet.c

Gimple

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OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

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OBJ

esl_fileparser.c

Gimple

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OBJ

esl_getopts.c

Gimple

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esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

itest_brute.c

cm.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_submodel.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alidisplay.c

cm_dpsearch_trunc.c

cm_file.c

cm_modelconfig.c

cm_pipeline.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsearch.c

cm_dpsmall.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

esl_dmatrix_utest

compile units

esl_dmatrix.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl_dmatrix.c

easel.c

esl_random.c

libraries

manual

alimask

compile units

alimask.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_msaweight.c

Gimple

GKD

OBJ

esl_regexp.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_tree.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_distance.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_msacluster.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

includes

alimask.c

errors.c

hmmer.c

easel.c

esl_alphabet.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_msaweight.c

esl_regexp.c

esl_ssi.c

esl_stopwatch.c

esl_tree.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_distance.c

esl_dmatrix.c

esl_keyhash.c

esl_mem.c

esl_msacluster.c

esl_random.c

esl_stack.c

esl_cluster.c

libraries

manual

cmfetch

compile units

cmfetch.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

cmfetch.c

cm.c

cm_file.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_modelconfig.c

cm_pipeline.c

cm_submodel.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsearch.c

cm_dpsmall.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

rocplot

compile units

rocplot.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

rocplot.c

easel.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_random.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl_gamma_utest

compile units

esl_gamma.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_histogram.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

esl_gamma.c

easel.c

esl_histogram.c

esl_random.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl-alipid

compile units

esl-alipid.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_distance.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

esl-alipid.c

easel.c

esl_alphabet.c

esl_distance.c

esl_dmatrix.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_ssi.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

libraries

manual

esl_msa_utest

compile units

esl_msa.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl_msa.c

easel.c

esl_alphabet.c

esl_keyhash.c

esl_mem.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_ssi.c

esl_wuss.c

esl_buffer.c

esl_stack.c

esl_random.c

libraries

manual

esl_distance_utest

compile units

esl_distance.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

includes

esl_distance.c

easel.c

esl_alphabet.c

esl_dmatrix.c

esl_getopts.c

esl_random.c

esl_randomseq.c

libraries

manual

esl_cluster_utest

compile units

esl_cluster.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

includes

esl_cluster.c

easel.c

esl_getopts.c

libraries

manual

rmark-create

compile units

rmark-create.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_distance.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msacluster.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

rmark-create.c

easel.c

esl_alphabet.c

esl_distance.c

esl_dmatrix.c

esl_fileparser.c

esl_getopts.c

esl_hmm.c

esl_msa.c

esl_msacluster.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_ssi.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_cluster.c

esl_keyhash.c

esl_mem.c

esl_stack.c

libraries

manual

esl_wuss_utest

compile units

esl_wuss.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl_wuss.c

easel.c

esl_stack.c

esl_random.c

libraries

manual

generic_viterbi_utest

compile units

generic_viterbi.c

Gimple

GKD

OBJ

build.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_vtrace.c

Gimple

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OBJ

hmmer.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

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OBJ

p7_gmx.c

Gimple

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OBJ

p7_hmm.c

Gimple

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OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_prior.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

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OBJ

esl_dirichlet.c

Gimple

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OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

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OBJ

esl_hmm.c

Gimple

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OBJ

esl_minimizer.c

Gimple

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OBJ

esl_msa.c

Gimple

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OBJ

esl_msafile.c

Gimple

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OBJ

esl_msafile_a2m.c

Gimple

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OBJ

esl_msafile_afa.c

Gimple

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OBJ

esl_msafile_clustal.c

Gimple

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OBJ

esl_msafile_phylip.c

Gimple

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OBJ

esl_msafile_psiblast.c

Gimple

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OBJ

esl_msafile_selex.c

Gimple

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OBJ

esl_msafile_stockholm.c

Gimple

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OBJ

esl_random.c

Gimple

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OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

generic_viterbi.c

build.c

generic_fwdback.c

generic_vtrace.c

hmmer.c

logsum.c

modelconfig.c

p7_bg.c

p7_gmx.c

p7_hmm.c

p7_hmmwindow.c

p7_prior.c

p7_profile.c

p7_trace.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_ssi.c

esl_stats.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

libraries

manual

esl_msafile_utest

compile units

esl_msafile.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

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OBJ

esl_msafile_afa.c

Gimple

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OBJ

esl_msafile_clustal.c

Gimple

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OBJ

esl_msafile_phylip.c

Gimple

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OBJ

esl_msafile_psiblast.c

Gimple

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OBJ

esl_msafile_selex.c

Gimple

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OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl_msafile.c

easel.c

esl_alphabet.c

esl_buffer.c

esl_getopts.c

esl_mem.c

esl_msa.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_ssi.c

esl_wuss.c

esl_keyhash.c

esl_stack.c

esl_random.c

libraries

manual

optacc_utest

compile units

optacc.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

logsum.c

Gimple

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OBJ

p7_bg.c

Gimple

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OBJ

p7_gmx.c

Gimple

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OBJ

p7_hmm.c

Gimple

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OBJ

p7_profile.c

Gimple

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OBJ

p7_trace.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

optacc.c

emit.c

generic_decoding.c

generic_fwdback.c

generic_optacc.c

hmmer.c

logsum.c

p7_bg.c

p7_gmx.c

p7_hmm.c

p7_profile.c

p7_trace.c

decoding.c

fwdback.c

p7_omx.c

p7_oprofile.c

modelconfig.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_sq.c

esl_sse.c

esl_stats.c

esl_vectorops.c

libraries

manual

cmsearch

compile units

cmsearch.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

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OBJ

cm_qdband.c

Gimple

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OBJ

cm_submodel.c

Gimple

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OBJ

cm_tophits.c

Gimple

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OBJ

cm_trunc.c

Gimple

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OBJ

cm_p7_domaindef.c

Gimple

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OBJ

cm_p7_modelconfig_trunc.c

Gimple

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OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

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OBJ

cp9_mx.c

Gimple

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OBJ

cp9_trace.c

Gimple

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OBJ

alphabet.c

Gimple

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OBJ

display.c

Gimple

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OBJ

errors.c

Gimple

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OBJ

hmmband.c

Gimple

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OBJ

logsum.c

Gimple

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OBJ

rnamat.c

Gimple

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OBJ

stats.c

Gimple

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OBJ

cm_alidisplay.c

Gimple

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OBJ

cm_alndata.c

Gimple

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OBJ

cm_dpalign.c

Gimple

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OBJ

cm_dpalign_trunc.c

Gimple

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OBJ

cm_dpsearch.c

Gimple

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OBJ

cm_dpsearch_trunc.c

Gimple

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OBJ

cm_dpsmall.c

Gimple

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OBJ

cp9_dp.c

Gimple

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OBJ

truncyk.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

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OBJ

generic_fwdback.c

Gimple

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OBJ

generic_null2.c

Gimple

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OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

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OBJ

p7_hmmwindow.c

Gimple

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OBJ

p7_null3.c

Gimple

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OBJ

p7_pipeline.c

Gimple

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OBJ

p7_profile.c

Gimple

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OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

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OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

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OBJ

esl_msafile_a2m.c

Gimple

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OBJ

esl_msafile_afa.c

Gimple

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OBJ

esl_msafile_clustal.c

Gimple

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OBJ

esl_msafile_phylip.c

Gimple

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OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

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OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

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OBJ

esl_stopwatch.c

Gimple

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OBJ

esl_threads.c

Gimple

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OBJ

esl_vectorops.c

Gimple

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OBJ

esl_workqueue.c

Gimple

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OBJ

esl_wuss.c

Gimple

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OBJ

esl_buffer.c

Gimple

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OBJ

includes

cmsearch.c

cm.c

cm_file.c

cm_modelconfig.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_pipeline.c

cm_qdband.c

cm_submodel.c

cm_tophits.c

cm_trunc.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alidisplay.c

cm_alndata.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch.c

cm_dpsearch_trunc.c

cm_dpsmall.c

cp9_dp.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_threads.c

esl_vectorops.c

esl_workqueue.c

esl_wuss.c

esl_buffer.c

libraries

manual

esl_msafile_afa_utest

compile units

esl_msafile_afa.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl_msafile_afa.c

easel.c

esl_alphabet.c

esl_buffer.c

esl_getopts.c

esl_mem.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_ssi.c

esl_wuss.c

esl_keyhash.c

esl_stack.c

esl_random.c

libraries

manual

esl_scorematrix_utest

compile units

esl_scorematrix.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_ratematrix.c

Gimple

GKD

OBJ

esl_rootfinder.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl_scorematrix.c

easel.c

esl_alphabet.c

esl_dmatrix.c

esl_fileparser.c

esl_ratematrix.c

esl_rootfinder.c

esl_vectorops.c

esl_random.c

libraries

manual

hmmconvert

compile units

hmmconvert.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

h2_io.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

hmmconvert.c

errors.c

h2_io.c

hmmer.c

p7_bg.c

p7_hmm.c

p7_hmmfile.c

evalues.c

modelconfig.c

modelstats.c

p7_gmx.c

p7_hmmwindow.c

p7_profile.c

fwdback.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

emit.c

generic_fwdback.c

logsum.c

p7_trace.c

ssvfilter.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_vectorops.c

libraries

manual

cm_tophits_utest

compile units

cm_tophits.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

cm_tophits.c

cm.c

cm_alidisplay.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_pipeline.c

cm_qdband.c

cm_trunc.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alndata.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch.c

cm_dpsearch_trunc.c

cm_dpsmall.c

cm_file.c

cm_modelconfig.c

cm_submodel.c

cp9_dp.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

hmmemit

compile units

hmmemit.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

hmmemit.c

emit.c

errors.c

hmmer.c

modelconfig.c

modelstats.c

tracealign.c

p7_alidisplay.c

p7_bg.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_profile.c

p7_trace.c

decoding.c

fwdback.c

optacc.c

p7_omx.c

p7_oprofile.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_optacc.c

logsum.c

msvfilter.c

vitfilter.c

ssvfilter.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

libraries

manual

esl_msafile2_utest

compile units

esl_msafile2.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

esl_msafile2.c

easel.c

esl_alphabet.c

esl_getopts.c

esl_keyhash.c

esl_mem.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_ssi.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_random.c

esl_stack.c

libraries

manual

hmmalign

compile units

hmmalign.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

hmmalign.c

errors.c

hmmer.c

tracealign.c

p7_alidisplay.c

p7_bg.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_profile.c

p7_trace.c

decoding.c

fwdback.c

optacc.c

p7_omx.c

p7_oprofile.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_optacc.c

logsum.c

modelconfig.c

modelstats.c

p7_hmmwindow.c

msvfilter.c

vitfilter.c

emit.c

ssvfilter.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

libraries

manual

esl-mask

compile units

esl-mask.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl-mask.c

easel.c

esl_fileparser.c

esl_getopts.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_ssi.c

esl_alphabet.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

esl_random.c

libraries

manual

hmmbuild

compile units

hmmbuild.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

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OBJ

p7_builder.c

Gimple

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OBJ

p7_gmx.c

Gimple

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OBJ

p7_hmm.c

Gimple

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OBJ

p7_hmmfile.c

Gimple

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OBJ

p7_hmmwindow.c

Gimple

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OBJ

p7_prior.c

Gimple

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OBJ

p7_profile.c

Gimple

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OBJ

p7_trace.c

Gimple

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OBJ

p7_oprofile.c

Gimple

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OBJ

build.c

Gimple

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OBJ

emit.c

Gimple

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OBJ

evalues.c

Gimple

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OBJ

eweight.c

Gimple

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OBJ

generic_fwdback.c

Gimple

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OBJ

logsum.c

Gimple

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OBJ

modelconfig.c

Gimple

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OBJ

seqmodel.c

Gimple

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OBJ

tracealign.c

Gimple

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OBJ

p7_alidisplay.c

Gimple

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OBJ

decoding.c

Gimple

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OBJ

fwdback.c

Gimple

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OBJ

msvfilter.c

Gimple

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OBJ

optacc.c

Gimple

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OBJ

vitfilter.c

Gimple

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OBJ

p7_omx.c

Gimple

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OBJ

generic_decoding.c

Gimple

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OBJ

generic_optacc.c

Gimple

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OBJ

ssvfilter.c

Gimple

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OBJ

easel.c

Gimple

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OBJ

esl_alphabet.c

Gimple

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OBJ

esl_dirichlet.c

Gimple

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OBJ

esl_dmatrix.c

Gimple

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OBJ

esl_fileparser.c

Gimple

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esl_getopts.c

Gimple

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OBJ

esl_gumbel.c

Gimple

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OBJ

esl_hmm.c

Gimple

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OBJ

esl_minimizer.c

Gimple

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OBJ

esl_msa.c

Gimple

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OBJ

esl_msacluster.c

Gimple

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esl_msafile.c

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esl_msafile_a2m.c

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esl_msafile_afa.c

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esl_msafile_clustal.c

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esl_msafile_phylip.c

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esl_msafile_psiblast.c

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esl_msafile_selex.c

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esl_msafile_stockholm.c

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esl_msaweight.c

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esl_random.c

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esl_randomseq.c

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OBJ

esl_rootfinder.c

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esl_scorematrix.c

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esl_sq.c

Gimple

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OBJ

esl_sse.c

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esl_ssi.c

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OBJ

esl_stats.c

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esl_stopwatch.c

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esl_threads.c

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esl_tree.c

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esl_vectorops.c

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esl_workqueue.c

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OBJ

esl_wuss.c

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esl_buffer.c

Gimple

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esl_cluster.c

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esl_distance.c

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esl_keyhash.c

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esl_mem.c

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esl_ratematrix.c

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esl_stack.c

Gimple

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OBJ

includes

hmmbuild.c

errors.c

hmmer.c

modelstats.c

p7_bg.c

p7_builder.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_prior.c

p7_profile.c

p7_trace.c

p7_oprofile.c

build.c

emit.c

evalues.c

eweight.c

generic_fwdback.c

logsum.c

modelconfig.c

seqmodel.c

tracealign.c

p7_alidisplay.c

decoding.c

fwdback.c

msvfilter.c

optacc.c

vitfilter.c

p7_omx.c

generic_decoding.c

generic_optacc.c

ssvfilter.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_dmatrix.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_msa.c

esl_msacluster.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_msaweight.c

esl_random.c

esl_randomseq.c

esl_rootfinder.c

esl_scorematrix.c

esl_sq.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_stopwatch.c

esl_threads.c

esl_tree.c

esl_vectorops.c

esl_workqueue.c

esl_wuss.c

esl_buffer.c

esl_cluster.c

esl_distance.c

esl_keyhash.c

esl_mem.c

esl_ratematrix.c

esl_stack.c

libraries

manual

p7_alidisplay_utest

compile units

p7_alidisplay.c

Gimple

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OBJ

p7_trace.c

Gimple

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OBJ

p7_hmm.c

Gimple

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OBJ

p7_profile.c

Gimple

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OBJ

easel.c

Gimple

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OBJ

esl_alphabet.c

Gimple

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OBJ

esl_dirichlet.c

Gimple

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OBJ

esl_fileparser.c

Gimple

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OBJ

esl_getopts.c

Gimple

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OBJ

esl_minimizer.c

Gimple

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OBJ

esl_random.c

Gimple

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OBJ

esl_sq.c

Gimple

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OBJ

esl_stats.c

Gimple

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OBJ

esl_vectorops.c

Gimple

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OBJ

includes

p7_alidisplay.c

p7_trace.c

p7_hmm.c

p7_profile.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_minimizer.c

esl_random.c

esl_sq.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl_vectorops_utest

compile units

esl_vectorops.c

Gimple

GKD

OBJ

easel.c

Gimple

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OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl_vectorops.c

easel.c

esl_random.c

libraries

manual

generic_stotrace_utest

compile units

generic_stotrace.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_viterbi.c

Gimple

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OBJ

hmmer.c

Gimple

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OBJ

logsum.c

Gimple

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OBJ

modelconfig.c

Gimple

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OBJ

p7_bg.c

Gimple

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OBJ

p7_gmx.c

Gimple

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OBJ

p7_hmm.c

Gimple

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OBJ

p7_hmmwindow.c

Gimple

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OBJ

p7_profile.c

Gimple

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OBJ

p7_trace.c

Gimple

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OBJ

easel.c

Gimple

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OBJ

esl_alphabet.c

Gimple

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OBJ

esl_dirichlet.c

Gimple

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OBJ

esl_fileparser.c

Gimple

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OBJ

esl_getopts.c

Gimple

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OBJ

esl_gumbel.c

Gimple

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OBJ

esl_hmm.c

Gimple

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OBJ

esl_minimizer.c

Gimple

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OBJ

esl_random.c

Gimple

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OBJ

esl_randomseq.c

Gimple

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esl_sq.c

Gimple

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OBJ

esl_stats.c

Gimple

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OBJ

esl_vectorops.c

Gimple

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OBJ

includes

generic_stotrace.c

emit.c

generic_fwdback.c

generic_viterbi.c

hmmer.c

logsum.c

modelconfig.c

p7_bg.c

p7_gmx.c

p7_hmm.c

p7_hmmwindow.c

p7_profile.c

p7_trace.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_stats.c

esl_vectorops.c

libraries

manual

cmemit

compile units

cmemit.c

Gimple

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OBJ

cm.c

Gimple

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OBJ

cm_file.c

Gimple

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OBJ

cm_modelconfig.c

Gimple

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OBJ

cm_modelmaker.c

Gimple

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OBJ

cm_mx.c

Gimple

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OBJ

cm_parsetree.c

Gimple

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OBJ

cm_qdband.c

Gimple

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OBJ

cm_submodel.c

Gimple

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OBJ

cm_tophits.c

Gimple

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OBJ

cm_trunc.c

Gimple

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OBJ

cm_p7_modelmaker.c

Gimple

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OBJ

cp9.c

Gimple

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OBJ

cp9_modelmaker.c

Gimple

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OBJ

cp9_mx.c

Gimple

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OBJ

cp9_trace.c

Gimple

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OBJ

alphabet.c

Gimple

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OBJ

display.c

Gimple

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OBJ

errors.c

Gimple

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OBJ

hmmband.c

Gimple

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OBJ

logsum.c

Gimple

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OBJ

rnamat.c

Gimple

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OBJ

stats.c

Gimple

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OBJ

cm_alidisplay.c

Gimple

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OBJ

cm_dpalign.c

Gimple

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OBJ

cm_dpalign_trunc.c

Gimple

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cm_dpsearch_trunc.c

Gimple

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OBJ

cm_pipeline.c

Gimple

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cm_p7_domaindef.c

Gimple

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cm_p7_modelconfig_trunc.c

Gimple

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cp9_dp.c

Gimple

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OBJ

cm_alndata.c

Gimple

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OBJ

cm_dpsearch.c

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cm_dpsmall.c

Gimple

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OBJ

truncyk.c

Gimple

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OBJ

emit.c

Gimple

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OBJ

evalues.c

Gimple

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OBJ

generic_decoding.c

Gimple

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OBJ

generic_fwdback.c

Gimple

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OBJ

generic_null2.c

Gimple

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OBJ

generic_stotrace.c

Gimple

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OBJ

logsum.c

Gimple

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OBJ

modelconfig.c

Gimple

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OBJ

modelstats.c

Gimple

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OBJ

tracealign.c

Gimple

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OBJ

p7_alidisplay.c

Gimple

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OBJ

p7_bg.c

Gimple

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OBJ

p7_domaindef.c

Gimple

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OBJ

p7_gmx.c

Gimple

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OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

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OBJ

p7_hmmwindow.c

Gimple

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OBJ

p7_null3.c

Gimple

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OBJ

p7_pipeline.c

Gimple

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p7_profile.c

Gimple

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OBJ

p7_spensemble.c

Gimple

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OBJ

p7_tophits.c

Gimple

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OBJ

p7_trace.c

Gimple

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OBJ

p7_msvdata.c

Gimple

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fm_general.c

Gimple

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OBJ

fm_msv.c

Gimple

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OBJ

decoding.c

Gimple

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OBJ

fwdback.c

Gimple

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OBJ

io.c

Gimple

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OBJ

msvfilter.c

Gimple

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OBJ

null2.c

Gimple

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OBJ

optacc.c

Gimple

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stotrace.c

Gimple

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OBJ

vitfilter.c

Gimple

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OBJ

p7_omx.c

Gimple

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p7_oprofile.c

Gimple

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fm.c

Gimple

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errors.c

Gimple

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generic_optacc.c

Gimple

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hmmer.c

Gimple

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fm_alphabet.c

Gimple

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ssvfilter.c

Gimple

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easel.c

Gimple

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esl_alphabet.c

Gimple

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esl_cluster.c

Gimple

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esl_dirichlet.c

Gimple

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esl_exponential.c

Gimple

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esl_fileparser.c

Gimple

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esl_getopts.c

Gimple

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esl_gumbel.c

Gimple

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esl_hmm.c

Gimple

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esl_keyhash.c

Gimple

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esl_mem.c

Gimple

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esl_minimizer.c

Gimple

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esl_msa.c

Gimple

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esl_msafile.c

Gimple

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esl_msafile_a2m.c

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esl_msafile_afa.c

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esl_msafile_clustal.c

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esl_msafile_phylip.c

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esl_msafile_psiblast.c

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esl_msafile_selex.c

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esl_msafile_stockholm.c

Gimple

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esl_random.c

Gimple

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esl_randomseq.c

Gimple

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esl_sq.c

Gimple

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esl_sqio.c

Gimple

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esl_sqio_ascii.c

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esl_sqio_ncbi.c

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esl_sse.c

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esl_ssi.c

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esl_stack.c

Gimple

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esl_stats.c

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esl_stopwatch.c

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esl_vectorops.c

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esl_wuss.c

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esl_buffer.c

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includes

cmemit.c

cm.c

cm_file.c

cm_modelconfig.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_submodel.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_pipeline.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsearch.c

cm_dpsmall.c

truncyk.c

emit.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

tracealign.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

errors.c

generic_optacc.c

hmmer.c

fm_alphabet.c

ssvfilter.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

p7_hmm_utest

compile units

p7_hmm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

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OBJ

p7_trace.c

Gimple

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OBJ

easel.c

Gimple

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OBJ

esl_alphabet.c

Gimple

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OBJ

esl_dirichlet.c

Gimple

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OBJ

esl_fileparser.c

Gimple

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OBJ

esl_getopts.c

Gimple

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OBJ

esl_minimizer.c

Gimple

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OBJ

esl_random.c

Gimple

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OBJ

esl_sq.c

Gimple

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OBJ

esl_stats.c

Gimple

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OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

p7_hmm.c

emit.c

hmmer.c

p7_profile.c

p7_trace.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_minimizer.c

esl_random.c

esl_sq.c

esl_stats.c

esl_vectorops.c

libraries

manual

generic_fwdback_chk_utest

compile units

generic_fwdback_chk.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

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OBJ

hmmer.c

Gimple

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OBJ

logsum.c

Gimple

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OBJ

modelconfig.c

Gimple

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OBJ

p7_bg.c

Gimple

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OBJ

p7_gbands.c

Gimple

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OBJ

p7_gmx.c

Gimple

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OBJ

p7_gmxchk.c

Gimple

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OBJ

p7_hmm.c

Gimple

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OBJ

p7_profile.c

Gimple

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OBJ

p7_trace.c

Gimple

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OBJ

easel.c

Gimple

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OBJ

esl_alphabet.c

Gimple

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OBJ

esl_dirichlet.c

Gimple

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OBJ

esl_fileparser.c

Gimple

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OBJ

esl_getopts.c

Gimple

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OBJ

esl_hmm.c

Gimple

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OBJ

esl_minimizer.c

Gimple

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OBJ

esl_random.c

Gimple

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OBJ

esl_randomseq.c

Gimple

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OBJ

esl_sq.c

Gimple

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OBJ

esl_stats.c

Gimple

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OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

generic_fwdback_chk.c

emit.c

generic_fwdback.c

hmmer.c

logsum.c

modelconfig.c

p7_bg.c

p7_gbands.c

p7_gmx.c

p7_gmxchk.c

p7_hmm.c

p7_profile.c

p7_trace.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl-reformat

compile units

esl-reformat.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

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OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

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OBJ

esl_msafile_a2m.c

Gimple

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OBJ

esl_msafile_afa.c

Gimple

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esl_msafile_clustal.c

Gimple

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esl_msafile_phylip.c

Gimple

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esl_msafile_psiblast.c

Gimple

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esl_msafile_selex.c

Gimple

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esl_msafile_stockholm.c

Gimple

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esl_sq.c

Gimple

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esl_sqio.c

Gimple

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esl_sqio_ascii.c

Gimple

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OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl-reformat.c

easel.c

esl_getopts.c

esl_mem.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_ssi.c

esl_wuss.c

esl_alphabet.c

esl_buffer.c

esl_keyhash.c

esl_stack.c

esl_random.c

libraries

manual

cmconvert

compile units

cmconvert.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

cmconvert.c

cm.c

cm_file.c

cm_modelconfig.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_submodel.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_pipeline.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsearch.c

cm_dpsmall.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

jackhmmer

compile units

jackhmmer.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_builder.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_prior.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

build.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

eweight.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

seqmodel.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msacluster.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_msaweight.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_rootfinder.c

Gimple

GKD

OBJ

esl_scorematrix.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_threads.c

Gimple

GKD

OBJ

esl_tree.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_workqueue.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_distance.c

Gimple

GKD

OBJ

esl_ratematrix.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

jackhmmer.c

errors.c

hmmer.c

logsum.c

p7_bg.c

p7_builder.c

p7_hmm.c

p7_hmmfile.c

p7_pipeline.c

p7_prior.c

p7_profile.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

fwdback.c

io.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

build.c

evalues.c

eweight.c

modelconfig.c

modelstats.c

seqmodel.c

tracealign.c

p7_alidisplay.c

p7_domaindef.c

p7_gmx.c

p7_hmmwindow.c

p7_null3.c

p7_spensemble.c

fm_alphabet.c

decoding.c

ssvfilter.c

null2.c

optacc.c

stotrace.c

emit.c

generic_decoding.c

generic_fwdback.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_dmatrix.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msacluster.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_msaweight.c

esl_random.c

esl_randomseq.c

esl_rootfinder.c

esl_scorematrix.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_stopwatch.c

esl_threads.c

esl_tree.c

esl_vectorops.c

esl_workqueue.c

esl_wuss.c

esl_buffer.c

esl_distance.c

esl_ratematrix.c

esl_stack.c

libraries

manual

nhmmer

compile units

nhmmer.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_builder.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_prior.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

build.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

eweight.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

seqmodel.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msacluster.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_msaweight.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_rootfinder.c

Gimple

GKD

OBJ

esl_scorematrix.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_threads.c

Gimple

GKD

OBJ

esl_tree.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_workqueue.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_distance.c

Gimple

GKD

OBJ

esl_ratematrix.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

nhmmer.c

errors.c

hmmer.c

logsum.c

modelconfig.c

p7_bg.c

p7_builder.c

p7_hmm.c

p7_hmmfile.c

p7_pipeline.c

p7_prior.c

p7_profile.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_alphabet.c

fm_general.c

fm_msv.c

fwdback.c

io.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

build.c

evalues.c

eweight.c

modelstats.c

seqmodel.c

tracealign.c

p7_alidisplay.c

p7_domaindef.c

p7_gmx.c

p7_hmmwindow.c

p7_null3.c

p7_spensemble.c

decoding.c

ssvfilter.c

null2.c

optacc.c

stotrace.c

emit.c

generic_decoding.c

generic_fwdback.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_dmatrix.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msacluster.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_msaweight.c

esl_random.c

esl_randomseq.c

esl_rootfinder.c

esl_scorematrix.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_stopwatch.c

esl_threads.c

esl_tree.c

esl_vectorops.c

esl_workqueue.c

esl_wuss.c

esl_buffer.c

esl_distance.c

esl_ratematrix.c

esl_stack.c

libraries

manual

esl_exponential_utest

compile units

esl_exponential.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_histogram.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

esl_exponential.c

easel.c

esl_histogram.c

esl_random.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl_recorder_utest

compile units

esl_recorder.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl_recorder.c

easel.c

esl_getopts.c

esl_random.c

libraries

manual

esl_msafile_a2m_utest

compile units

esl_msafile_a2m.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

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OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl_msafile_a2m.c

easel.c

esl_alphabet.c

esl_buffer.c

esl_getopts.c

esl_mem.c

esl_msa.c

esl_msafile.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_ssi.c

esl_wuss.c

esl_keyhash.c

esl_stack.c

esl_random.c

libraries

manual

p7_trace_utest

compile units

p7_trace.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

p7_trace.c

hmmer.c

tracealign.c

p7_alidisplay.c

p7_bg.c

p7_gmx.c

p7_hmm.c

p7_profile.c

decoding.c

fwdback.c

optacc.c

p7_omx.c

p7_oprofile.c

errors.c

generic_decoding.c

generic_fwdback.c

generic_optacc.c

logsum.c

modelconfig.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_hmm.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_sq.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

libraries

manual

decoding_utest

compile units

decoding.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

decoding.c

generic_decoding.c

generic_fwdback.c

hmmer.c

logsum.c

p7_bg.c

p7_gmx.c

p7_hmm.c

p7_profile.c

fwdback.c

p7_omx.c

p7_oprofile.c

modelconfig.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_sse.c

esl_stats.c

esl_vectorops.c

libraries

manual

makenhmmerdb

compile units

makenhmmerdb.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

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OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

divsufsort.c

Gimple

GKD

OBJ

includes

makenhmmerdb.c

hmmer.c

fm_alphabet.c

easel.c

esl_alphabet.c

esl_getopts.c

esl_mem.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_ssi.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_stack.c

esl_random.c

divsufsort.c

libraries

manual

null2_utest

compile units

null2.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

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OBJ

modelconfig.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

null2.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

hmmer.c

logsum.c

p7_bg.c

p7_gmx.c

p7_hmm.c

p7_profile.c

decoding.c

fwdback.c

p7_omx.c

p7_oprofile.c

modelconfig.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_sse.c

esl_stats.c

esl_vectorops.c

libraries

manual

p7_gmxchk_utest

compile units

p7_gmxchk.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

p7_gmxchk.c

hmmer.c

logsum.c

modelconfig.c

p7_bg.c

p7_hmm.c

p7_profile.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_stats.c

esl_vectorops.c

libraries

manual

cmstat

compile units

cmstat.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

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OBJ

eweight.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

prior.c

Gimple

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OBJ

rnamat.c

Gimple

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OBJ

stats.c

Gimple

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OBJ

cm_alidisplay.c

Gimple

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OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

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OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

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OBJ

p7_pipeline.c

Gimple

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OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_rootfinder.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

cmstat.c

cm.c

cm_file.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

eweight.c

hmmband.c

logsum.c

prior.c

rnamat.c

stats.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_modelconfig.c

cm_pipeline.c

cm_submodel.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsearch.c

cm_dpsmall.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_rootfinder.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

esl_ssi_utest

compile units

esl_ssi.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

esl_ssi.c

easel.c

esl_getopts.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_alphabet.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

libraries

manual

truncyk_check

compile units

truncyk_check.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

truncyk_check.c

cm.c

cm_file.c

cm_modelconfig.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_submodel.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

truncyk.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_dpsmall.c

cm_pipeline.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsearch.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

seqmodel_utest

compile units

seqmodel.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_builder.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_prior.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

build.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

eweight.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msacluster.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

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OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_msaweight.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_rootfinder.c

Gimple

GKD

OBJ

esl_scorematrix.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_tree.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_distance.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_ratematrix.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

seqmodel.c

hmmer.c

p7_bg.c

p7_builder.c

p7_hmm.c

p7_prior.c

p7_profile.c

p7_trace.c

p7_oprofile.c

build.c

evalues.c

eweight.c

modelconfig.c

modelstats.c

tracealign.c

p7_alidisplay.c

p7_gmx.c

p7_hmmwindow.c

decoding.c

fwdback.c

msvfilter.c

optacc.c

vitfilter.c

p7_omx.c

emit.c

errors.c

generic_decoding.c

generic_fwdback.c

generic_optacc.c

logsum.c

ssvfilter.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_dmatrix.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_msa.c

esl_msacluster.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_msaweight.c

esl_random.c

esl_randomseq.c

esl_rootfinder.c

esl_scorematrix.c

esl_sq.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_tree.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_cluster.c

esl_distance.c

esl_keyhash.c

esl_mem.c

esl_ratematrix.c

esl_stack.c

libraries

manual

bandcyk-montecarlo-test

compile units

bandcyk-montecarlo-test.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

bandcyk-montecarlo-test.c

cm.c

cm_file.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_modelconfig.c

cm_pipeline.c

cm_submodel.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

cm_alndata.c

cm_dpsearch.c

cm_dpsmall.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

p7_msvdata_utest

compile units

p7_msvdata.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

p7_msvdata.c

p7_hmm.c

p7_profile.c

p7_oprofile.c

modelconfig.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_minimizer.c

esl_random.c

esl_sse.c

esl_stats.c

esl_vectorops.c

libraries

manual

sse_cmsearch

compile units

sse_cmsearch.c

Gimple

GKD

OBJ

cm.c

Gimple

GKD

OBJ

cm_file.c

Gimple

GKD

OBJ

cm_modelconfig.c

Gimple

GKD

OBJ

cm_modelmaker.c

Gimple

GKD

OBJ

cm_mx.c

Gimple

GKD

OBJ

cm_parsetree.c

Gimple

GKD

OBJ

cm_qdband.c

Gimple

GKD

OBJ

cm_submodel.c

Gimple

GKD

OBJ

cm_tophits.c

Gimple

GKD

OBJ

cm_trunc.c

Gimple

GKD

OBJ

cm_p7_modelmaker.c

Gimple

GKD

OBJ

cp9.c

Gimple

GKD

OBJ

cp9_modelmaker.c

Gimple

GKD

OBJ

cp9_mx.c

Gimple

GKD

OBJ

cp9_trace.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

display.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmband.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

rnamat.c

Gimple

GKD

OBJ

stats.c

Gimple

GKD

OBJ

cm_optimized.c

Gimple

GKD

OBJ

sse_cm_dpsearch.c

Gimple

GKD

OBJ

sse_cm_dpsmall.c

Gimple

GKD

OBJ

sse_cmcons_mscyk.c

Gimple

GKD

OBJ

sse_util.c

Gimple

GKD

OBJ

cm_alidisplay.c

Gimple

GKD

OBJ

cm_dpalign.c

Gimple

GKD

OBJ

cm_dpalign_trunc.c

Gimple

GKD

OBJ

cm_dpsearch_trunc.c

Gimple

GKD

OBJ

cm_dpsmall.c

Gimple

GKD

OBJ

cm_pipeline.c

Gimple

GKD

OBJ

cm_p7_domaindef.c

Gimple

GKD

OBJ

cm_p7_modelconfig_trunc.c

Gimple

GKD

OBJ

cp9_dp.c

Gimple

GKD

OBJ

sse_cmcons_hitmx.c

Gimple

GKD

OBJ

cm_alndata.c

Gimple

GKD

OBJ

cm_dpsearch.c

Gimple

GKD

OBJ

truncyk.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_null2.c

Gimple

GKD

OBJ

generic_stotrace.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_pipeline.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

decoding.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

GKD

OBJ

stotrace.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

tracealign.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_histogram.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_stopwatch.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

includes

sse_cmsearch.c

cm.c

cm_file.c

cm_modelconfig.c

cm_modelmaker.c

cm_mx.c

cm_parsetree.c

cm_qdband.c

cm_submodel.c

cm_tophits.c

cm_trunc.c

cm_p7_modelmaker.c

cp9.c

cp9_modelmaker.c

cp9_mx.c

cp9_trace.c

alphabet.c

display.c

errors.c

hmmband.c

logsum.c

rnamat.c

stats.c

cm_optimized.c

sse_cm_dpsearch.c

sse_cm_dpsmall.c

sse_cmcons_mscyk.c

sse_util.c

cm_alidisplay.c

cm_dpalign.c

cm_dpalign_trunc.c

cm_dpsearch_trunc.c

cm_dpsmall.c

cm_pipeline.c

cm_p7_domaindef.c

cm_p7_modelconfig_trunc.c

cp9_dp.c

sse_cmcons_hitmx.c

cm_alndata.c

cm_dpsearch.c

truncyk.c

evalues.c

generic_decoding.c

generic_fwdback.c

generic_null2.c

generic_stotrace.c

logsum.c

modelconfig.c

modelstats.c

p7_alidisplay.c

p7_bg.c

p7_domaindef.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_null3.c

p7_pipeline.c

p7_profile.c

p7_spensemble.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

decoding.c

fwdback.c

io.c

msvfilter.c

null2.c

optacc.c

stotrace.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

emit.c

errors.c

hmmer.c

tracealign.c

fm_alphabet.c

ssvfilter.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_histogram.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

libraries

manual

esl_fileparser_utest

compile units

esl_fileparser.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

includes

esl_fileparser.c

easel.c

libraries

manual

esl_sqio_utest

compile units

esl_sqio.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

includes

esl_sqio.c

easel.c

esl_alphabet.c

esl_getopts.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_ssi.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_keyhash.c

esl_mem.c

esl_stack.c

libraries

manual

create-profmark

compile units

create-profmark.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_distance.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msacluster.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_psiblast.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_msashuffle.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

includes

create-profmark.c

easel.c

esl_alphabet.c

esl_distance.c

esl_dmatrix.c

esl_getopts.c

esl_keyhash.c

esl_mem.c

esl_msa.c

esl_msacluster.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_msashuffle.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_ssi.c

esl_stack.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_cluster.c

libraries

manual

esl_msafile_psiblast_utest

compile units

esl_msafile_psiblast.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_buffer.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

GKD

OBJ

esl_msafile_phylip.c

Gimple

GKD

OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_wuss.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_stack.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

includes

esl_msafile_psiblast.c

easel.c

esl_alphabet.c

esl_buffer.c

esl_getopts.c

esl_mem.c

esl_msa.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_ssi.c

esl_wuss.c

esl_keyhash.c

esl_stack.c

esl_random.c

libraries

manual

esl_hyperexp_utest

compile units

esl_hyperexp.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_histogram.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

esl_hyperexp.c

easel.c

esl_exponential.c

esl_fileparser.c

esl_histogram.c

esl_minimizer.c

esl_random.c

esl_stats.c

esl_vectorops.c

libraries

manual

io_utest

compile units

io.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

io.c

hmmer.c

p7_bg.c

p7_hmm.c

p7_hmmfile.c

p7_oprofile.c

evalues.c

modelconfig.c

modelstats.c

p7_gmx.c

p7_hmmwindow.c

p7_profile.c

fwdback.c

msvfilter.c

vitfilter.c

p7_omx.c

emit.c

errors.c

generic_fwdback.c

logsum.c

p7_trace.c

ssvfilter.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_vectorops.c

libraries

manual

esl_getopts_utest

compile units

esl_getopts.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

includes

esl_getopts.c

easel.c

libraries

manual

easel_utest

compile units

easel.c

Gimple

GKD

OBJ

includes

easel.c

libraries

manual

hmmstat

compile units

hmmstat.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

modelstats.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmfile.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

evalues.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

ssvfilter.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_ssi.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

hmmstat.c

errors.c

hmmer.c

modelstats.c

p7_bg.c

p7_gmx.c

p7_hmm.c

p7_hmmfile.c

p7_hmmwindow.c

p7_profile.c

emit.c

evalues.c

generic_fwdback.c

logsum.c

modelconfig.c

p7_trace.c

fwdback.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

ssvfilter.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_sq.c

esl_sse.c

esl_ssi.c

esl_stats.c

esl_vectorops.c

libraries

manual

hmmpgmd

compile units

hmmpgmd.c

Gimple

GKD

OBJ

errors.c

Gimple

GKD

OBJ

hmmdmstr.c

Gimple

GKD

OBJ

hmmdwrkr.c

Gimple

GKD

OBJ

hmmdutils.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

logsum.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_builder.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmcache.c

Gimple

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OBJ

p7_hmmfile.c

Gimple

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OBJ

p7_pipeline.c

Gimple

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OBJ

p7_prior.c

Gimple

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OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_tophits.c

Gimple

GKD

OBJ

p7_trace.c

Gimple

GKD

OBJ

p7_msvdata.c

Gimple

GKD

OBJ

fm_general.c

Gimple

GKD

OBJ

fm_msv.c

Gimple

GKD

OBJ

fwdback.c

Gimple

GKD

OBJ

io.c

Gimple

GKD

OBJ

msvfilter.c

Gimple

GKD

OBJ

vitfilter.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

fm.c

Gimple

GKD

OBJ

build.c

Gimple

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OBJ

cachedb.c

Gimple

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OBJ

evalues.c

Gimple

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OBJ

eweight.c

Gimple

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OBJ

modelstats.c

Gimple

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OBJ

seqmodel.c

Gimple

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OBJ

tracealign.c

Gimple

GKD

OBJ

p7_alidisplay.c

Gimple

GKD

OBJ

p7_domaindef.c

Gimple

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OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_null3.c

Gimple

GKD

OBJ

p7_spensemble.c

Gimple

GKD

OBJ

fm_alphabet.c

Gimple

GKD

OBJ

decoding.c

Gimple

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OBJ

ssvfilter.c

Gimple

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OBJ

null2.c

Gimple

GKD

OBJ

optacc.c

Gimple

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OBJ

stotrace.c

Gimple

GKD

OBJ

emit.c

Gimple

GKD

OBJ

generic_decoding.c

Gimple

GKD

OBJ

generic_fwdback.c

Gimple

GKD

OBJ

generic_optacc.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_cluster.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_dmatrix.c

Gimple

GKD

OBJ

esl_exponential.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_keyhash.c

Gimple

GKD

OBJ

esl_mem.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_msa.c

Gimple

GKD

OBJ

esl_msacluster.c

Gimple

GKD

OBJ

esl_msafile.c

Gimple

GKD

OBJ

esl_msafile_a2m.c

Gimple

GKD

OBJ

esl_msafile_afa.c

Gimple

GKD

OBJ

esl_msafile_clustal.c

Gimple

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OBJ

esl_msafile_phylip.c

Gimple

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OBJ

esl_msafile_psiblast.c

Gimple

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OBJ

esl_msafile_selex.c

Gimple

GKD

OBJ

esl_msafile_stockholm.c

Gimple

GKD

OBJ

esl_msaweight.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_rootfinder.c

Gimple

GKD

OBJ

esl_scorematrix.c

Gimple

GKD

OBJ

esl_sq.c

Gimple

GKD

OBJ

esl_sqio.c

Gimple

GKD

OBJ

esl_sqio_ascii.c

Gimple

GKD

OBJ

esl_sqio_ncbi.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

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OBJ

esl_ssi.c

Gimple

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OBJ

esl_stack.c

Gimple

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OBJ

esl_stats.c

Gimple

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OBJ

esl_stopwatch.c

Gimple

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OBJ

esl_threads.c

Gimple

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OBJ

esl_tree.c

Gimple

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esl_vectorops.c

Gimple

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esl_wuss.c

Gimple

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esl_buffer.c

Gimple

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esl_distance.c

Gimple

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esl_ratematrix.c

Gimple

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OBJ

includes

hmmpgmd.c

errors.c

hmmdmstr.c

hmmdwrkr.c

hmmdutils.c

hmmer.c

logsum.c

modelconfig.c

p7_bg.c

p7_builder.c

p7_hmm.c

p7_hmmcache.c

p7_hmmfile.c

p7_pipeline.c

p7_prior.c

p7_profile.c

p7_tophits.c

p7_trace.c

p7_msvdata.c

fm_general.c

fm_msv.c

fwdback.c

io.c

msvfilter.c

vitfilter.c

p7_omx.c

p7_oprofile.c

fm.c

build.c

cachedb.c

evalues.c

eweight.c

modelstats.c

seqmodel.c

tracealign.c

p7_alidisplay.c

p7_domaindef.c

p7_gmx.c

p7_hmmwindow.c

p7_null3.c

p7_spensemble.c

fm_alphabet.c

decoding.c

ssvfilter.c

null2.c

optacc.c

stotrace.c

emit.c

generic_decoding.c

generic_fwdback.c

generic_optacc.c

easel.c

esl_alphabet.c

esl_cluster.c

esl_dirichlet.c

esl_dmatrix.c

esl_exponential.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_keyhash.c

esl_mem.c

esl_minimizer.c

esl_msa.c

esl_msacluster.c

esl_msafile.c

esl_msafile_a2m.c

esl_msafile_afa.c

esl_msafile_clustal.c

esl_msafile_phylip.c

esl_msafile_psiblast.c

esl_msafile_selex.c

esl_msafile_stockholm.c

esl_msaweight.c

esl_random.c

esl_randomseq.c

esl_rootfinder.c

esl_scorematrix.c

esl_sq.c

esl_sqio.c

esl_sqio_ascii.c

esl_sqio_ncbi.c

esl_sse.c

esl_ssi.c

esl_stack.c

esl_stats.c

esl_stopwatch.c

esl_threads.c

esl_tree.c

esl_vectorops.c

esl_wuss.c

esl_buffer.c

esl_distance.c

esl_ratematrix.c

libraries

manual

vitfilter_utest

compile units

vitfilter.c

Gimple

GKD

OBJ

generic_viterbi.c

Gimple

GKD

OBJ

hmmer.c

Gimple

GKD

OBJ

p7_bg.c

Gimple

GKD

OBJ

p7_gmx.c

Gimple

GKD

OBJ

p7_hmm.c

Gimple

GKD

OBJ

p7_hmmwindow.c

Gimple

GKD

OBJ

p7_profile.c

Gimple

GKD

OBJ

p7_omx.c

Gimple

GKD

OBJ

p7_oprofile.c

Gimple

GKD

OBJ

modelconfig.c

Gimple

GKD

OBJ

easel.c

Gimple

GKD

OBJ

esl_alphabet.c

Gimple

GKD

OBJ

esl_dirichlet.c

Gimple

GKD

OBJ

esl_fileparser.c

Gimple

GKD

OBJ

esl_getopts.c

Gimple

GKD

OBJ

esl_gumbel.c

Gimple

GKD

OBJ

esl_hmm.c

Gimple

GKD

OBJ

esl_minimizer.c

Gimple

GKD

OBJ

esl_random.c

Gimple

GKD

OBJ

esl_randomseq.c

Gimple

GKD

OBJ

esl_sse.c

Gimple

GKD

OBJ

esl_stats.c

Gimple

GKD

OBJ

esl_vectorops.c

Gimple

GKD

OBJ

includes

vitfilter.c

generic_viterbi.c

hmmer.c

p7_bg.c

p7_gmx.c

p7_hmm.c

p7_hmmwindow.c

p7_profile.c

p7_omx.c

p7_oprofile.c

modelconfig.c

easel.c

esl_alphabet.c

esl_dirichlet.c

esl_fileparser.c

esl_getopts.c

esl_gumbel.c

esl_hmm.c

esl_minimizer.c

esl_random.c

esl_randomseq.c

esl_sse.c

esl_stats.c

esl_vectorops.c

libraries

manual