fastx-toolkit - amd64
Documentation
./doc/copyright
./doc/README.gz
./doc/README.Debian
./doc/THANKS
./doc/changelog.Debian.gz
./doc/NEWS.Debian.gz
./doc/changelog.gz
Binaries
fastx_renamer
compile units
fastx_renamer.c
Gimple
./fastx_renamer.c.004t.gimple
GKD
./fastx_renamer.o.gkd
OBJ
obj: ./fastx_renamer.o
fastx.c
Gimple
./fastx.c.004t.gimple
GKD
./fastx.o.gkd
OBJ
obj: ./fastx.o
fastx_args.c
Gimple
./fastx_args.c.004t.gimple
GKD
./fastx_args.o.gkd
OBJ
obj: ./fastx_args.o
chomp.c
Gimple
./chomp.c.004t.gimple
GKD
./chomp.o.gkd
OBJ
obj: ./chomp.o
includes
fastx_renamer.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers/../../src/libfastx/fastx.h
../headers/../../src/libfastx/fastx_args.h
../headers//usr/include/err.h
fastx.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
./fastx.h
../headers//usr/include/unistd.h
../headers//usr/include/err.h
./chomp.h
fastx_args.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./fastx_args.h
../headers//usr/include/getopt.h
../headers//usr/include/err.h
chomp.c
libraries
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/fastx_renamer.1.gz
fasta_nucleotide_changer
compile units
fasta_nucleotide_changer.c
Gimple
./fasta_nucleotide_changer.c.004t.gimple
GKD
./fasta_nucleotide_changer.o.gkd
OBJ
obj: ./fasta_nucleotide_changer.o
fastx.c
Gimple
./fastx.c.004t.gimple
GKD
./fastx.o.gkd
OBJ
obj: ./fastx.o
fastx_args.c
Gimple
./fastx_args.c.004t.gimple
GKD
./fastx_args.o.gkd
OBJ
obj: ./fastx_args.o
chomp.c
Gimple
./chomp.c.004t.gimple
GKD
./chomp.o.gkd
OBJ
obj: ./chomp.o
includes
fasta_nucleotide_changer.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers/../../src/libfastx/fastx.h
../headers/../../src/libfastx/fastx_args.h
../headers//usr/include/err.h
fastx.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
./fastx.h
../headers//usr/include/unistd.h
../headers//usr/include/err.h
./chomp.h
fastx_args.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./fastx_args.h
../headers//usr/include/getopt.h
../headers//usr/include/err.h
chomp.c
libraries
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/fasta_nucleotide_changer.1.gz
fastx_trimmer
compile units
fastx_trimmer.c
Gimple
./fastx_trimmer.c.004t.gimple
GKD
./fastx_trimmer.o.gkd
OBJ
obj: ./fastx_trimmer.o
fastx.c
Gimple
./fastx.c.004t.gimple
GKD
./fastx.o.gkd
OBJ
obj: ./fastx.o
fastx_args.c
Gimple
./fastx_args.c.004t.gimple
GKD
./fastx_args.o.gkd
OBJ
obj: ./fastx_args.o
chomp.c
Gimple
./chomp.c.004t.gimple
GKD
./chomp.o.gkd
OBJ
obj: ./chomp.o
includes
fastx_trimmer.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers/../../src/libfastx/fastx.h
../headers/../../src/libfastx/fastx_args.h
../headers//usr/include/stdlib.h
../headers//usr/include/err.h
fastx.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
./fastx.h
../headers//usr/include/unistd.h
../headers//usr/include/err.h
./chomp.h
fastx_args.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./fastx_args.h
../headers//usr/include/getopt.h
../headers//usr/include/err.h
chomp.c
libraries
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/fastx_trimmer.1.gz
fastx_collapser
compile units
fastx_collapser.cpp
Class
./fastx_collapser.cpp.002t.class
Gimple
./fastx_collapser.cpp.004t.gimple
GKD
./fastx_collapser.o.gkd
OBJ
obj: ./fastx_collapser.o
fastx.c
Gimple
./fastx.c.004t.gimple
GKD
./fastx.o.gkd
OBJ
obj: ./fastx.o
fastx_args.c
Gimple
./fastx_args.c.004t.gimple
GKD
./fastx_args.o.gkd
OBJ
obj: ./fastx_args.o
chomp.c
Gimple
./chomp.c.004t.gimple
GKD
./chomp.o.gkd
OBJ
obj: ./chomp.o
includes
fastx_collapser.cpp
../headers//usr/include/c++/4.9/bits/stl_algo.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/bits/stl_list.h
../headers//usr/include/c++/4.9/bits/stl_pair.h
../headers//usr/include/c++/4.9/ostream
../headers//usr/include/c++/4.9/bits/basic_ios.h
../headers//usr/include/c++/4.9/bits/locale_facets.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/list.tcc
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/hashtable_policy.h
../headers//usr/include/c++/4.9/bits/unordered_map.h
../headers//usr/include/c++/4.9/bits/hashtable.h
../headers//usr/include/c++/4.9/bits/functional_hash.h
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/tuple
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/c++/4.9/type_traits
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/c++/4.9/utility
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/bits/exception_ptr.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/cmath
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/cstdint
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/initializer_list
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/random.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/bits/ostream.tcc
../headers//usr/include/c++/4.9/streambuf
../headers//usr/include/c++/4.9/bits/postypes.h
../headers//usr/include/c++/4.9/bits/uses_allocator.h
../headers//usr/include/c++/4.9/bits/stl_function.h
../headers//usr/include/c++/4.9/bits/alloc_traits.h
../headers//usr/include/c++/4.9/bits/ptr_traits.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/bits/move.h
../headers//usr/include/c++/4.9/fstream
../headers//usr/include/c++/4.9/bits/ostream_insert.h
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/c++/4.9/bits/hash_bytes.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/aligned_buffer.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/mathdef.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/stdint.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/wctype.h
../headers/../../src/libfastx/fastx.h
../headers/../../src/libfastx/fastx_args.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/err.h
fastx.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
./fastx.h
../headers//usr/include/unistd.h
../headers//usr/include/err.h
./chomp.h
fastx_args.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./fastx_args.h
../headers//usr/include/getopt.h
../headers//usr/include/err.h
chomp.c
libraries
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/fastx_collapser.1.gz
fastq_quality_filter
compile units
fastq_quality_filter.c
Gimple
./fastq_quality_filter.c.004t.gimple
GKD
./fastq_quality_filter.o.gkd
OBJ
obj: ./fastq_quality_filter.o
fastx.c
Gimple
./fastx.c.004t.gimple
GKD
./fastx.o.gkd
OBJ
obj: ./fastx.o
fastx_args.c
Gimple
./fastx_args.c.004t.gimple
GKD
./fastx_args.o.gkd
OBJ
obj: ./fastx_args.o
chomp.c
Gimple
./chomp.c.004t.gimple
GKD
./chomp.o.gkd
OBJ
obj: ./chomp.o
includes
fastq_quality_filter.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers/../../src/libfastx/fastx.h
../headers/../../src/libfastx/fastx_args.h
../headers//usr/include/err.h
../headers//usr/include/stdlib.h
fastx.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
./fastx.h
../headers//usr/include/unistd.h
../headers//usr/include/err.h
./chomp.h
fastx_args.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./fastx_args.h
../headers//usr/include/getopt.h
../headers//usr/include/err.h
chomp.c
libraries
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/fastq_quality_filter.1.gz
seqalign_test
compile units
unassigned
seqalign_test.cpp
Class
./seqalign_test.cpp.002t.class
Gimple
./seqalign_test.cpp.004t.gimple
GKD
./seqalign_test.o.gkd
OBJ
obj: ./seqalign_test.o
sequence_alignment.cpp
Class
./sequence_alignment.cpp.002t.class
Gimple
./sequence_alignment.cpp.004t.gimple
GKD
./sequence_alignment.o.gkd
OBJ
obj: ./sequence_alignment.o
includes
unassigned
../headers/../../src/libfastx/sequence_alignment.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
seqalign_test.cpp
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/c++/4.9/type_traits
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/cstdint
../headers//usr/include/c++/4.9/bits/exception_ptr.h
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/initializer_list
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/bits/ptr_traits.h
../headers//usr/include/c++/4.9/bits/alloc_traits.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/bits/move.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/stdint.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/c++/4.9/bits/stl_pair.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/x86_64-linux-gnu/bits/confname.h
sequence_alignment.cpp
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/bits/basic_string.h
./sequence_alignment.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ostream
../headers//usr/include/c++/4.9/bits/basic_ios.h
../headers//usr/include/c++/4.9/bits/locale_facets.h
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/iomanip
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/bits/move.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/bits/stl_algo.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/type_traits
../headers//usr/include/c++/4.9/bits/stl_pair.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/cstdint
../headers//usr/include/c++/4.9/bits/exception_ptr.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/initializer_list
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/bits/ostream.tcc
../headers//usr/include/c++/4.9/cmath
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/random.h
../headers//usr/include/c++/4.9/ctime
../headers//usr/include/c++/4.9/bits/ptr_traits.h
../headers//usr/include/c++/4.9/bits/alloc_traits.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/bits/postypes.h
../headers//usr/include/c++/4.9/bits/ostream_insert.h
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/stdint.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/mathdef.h
../headers//usr/include/x86_64-linux-gnu/bits/confname.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/err.h
libraries
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
fastx_uncollapser
compile units
fastx_uncollapser.cpp
Class
./fastx_uncollapser.cpp.002t.class
Gimple
./fastx_uncollapser.cpp.004t.gimple
GKD
./fastx_uncollapser.o.gkd
OBJ
obj: ./fastx_uncollapser.o
fastx.c
Gimple
./fastx.c.004t.gimple
GKD
./fastx.o.gkd
OBJ
obj: ./fastx.o
fastx_args.c
Gimple
./fastx_args.c.004t.gimple
GKD
./fastx_args.o.gkd
OBJ
obj: ./fastx_args.o
chomp.c
Gimple
./chomp.c.004t.gimple
GKD
./chomp.o.gkd
OBJ
obj: ./chomp.o
includes
fastx_uncollapser.cpp
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/gtextutils/text_line_reader.h
../headers//usr/include/c++/4.9/sstream
../headers//usr/include/c++/4.9/streambuf
../headers//usr/include/c++/4.9/istream
../headers//usr/include/c++/4.9/bits/basic_ios.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/gtextutils/string_tokenize.h
../headers//usr/include/gtextutils/stream_wrapper.h
../headers//usr/include/c++/4.9/ostream
../headers//usr/include/c++/4.9/bits/locale_facets.h
../headers//usr/include/c++/4.9/fstream
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/c++/4.9/type_traits
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/c++/4.9/bits/stl_pair.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/bits/exception_ptr.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/cmath
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/cstdint
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/initializer_list
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/random.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/bits/ostream.tcc
../headers//usr/include/c++/4.9/bits/postypes.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/bits/ptr_traits.h
../headers//usr/include/c++/4.9/bits/alloc_traits.h
../headers//usr/include/c++/4.9/bits/move.h
../headers//usr/include/c++/4.9/bits/fstream.tcc
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/c++/4.9/bits/ostream_insert.h
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/mathdef.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/stdint.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/wctype.h
../headers/../../src/libfastx/fastx.h
../headers/../../src/libfastx/fastx_args.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/err.h
fastx.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
./fastx.h
../headers//usr/include/unistd.h
../headers//usr/include/err.h
./chomp.h
fastx_args.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./fastx_args.h
../headers//usr/include/getopt.h
../headers//usr/include/err.h
chomp.c
libraries
../libs/usr/lib/x86_64-linux-gnu/libgtextutils-0.7.so.0
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/fastx_uncollapser.1.gz
fastx_clipper
compile units
fastx_clipper.cpp
Class
./fastx_clipper.cpp.002t.class
Gimple
./fastx_clipper.cpp.004t.gimple
GKD
./fastx_clipper.o.gkd
OBJ
obj: ./fastx_clipper.o
fastx.c
Gimple
./fastx.c.004t.gimple
GKD
./fastx.o.gkd
OBJ
obj: ./fastx.o
fastx_args.c
Gimple
./fastx_args.c.004t.gimple
GKD
./fastx_args.o.gkd
OBJ
obj: ./fastx_args.o
sequence_alignment.cpp
Class
./sequence_alignment.cpp.002t.class
Gimple
./sequence_alignment.cpp.004t.gimple
GKD
./sequence_alignment.o.gkd
OBJ
obj: ./sequence_alignment.o
chomp.c
Gimple
./chomp.c.004t.gimple
GKD
./chomp.o.gkd
OBJ
obj: ./chomp.o
includes
fastx_clipper.cpp
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers/../../src/libfastx/sequence_alignment.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/c++/4.9/iostream
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/c++/4.9/cstddef
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/type_traits
../headers//usr/include/c++/4.9/bits/exception_ptr.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/bits/stl_pair.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/cmath
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/cstdint
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/initializer_list
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/random.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/bits/ptr_traits.h
../headers//usr/include/c++/4.9/bits/alloc_traits.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/bits/move.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/x86_64-linux-gnu/bits/mathdef.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/stdint.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/wctype.h
../headers/../../src/libfastx/fastx.h
../headers/../../src/libfastx/fastx_args.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/err.h
../headers//usr/include/x86_64-linux-gnu/bits/confname.h
fastx.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
./fastx.h
../headers//usr/include/unistd.h
../headers//usr/include/err.h
./chomp.h
fastx_args.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./fastx_args.h
../headers//usr/include/getopt.h
../headers//usr/include/err.h
sequence_alignment.cpp
../headers//usr/include/c++/4.9/bits/stl_vector.h
../headers//usr/include/c++/4.9/bits/basic_string.h
./sequence_alignment.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/bits/stl_construct.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ostream
../headers//usr/include/c++/4.9/bits/basic_ios.h
../headers//usr/include/c++/4.9/bits/locale_facets.h
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/c++/4.9/bits/stl_algobase.h
../headers//usr/include/c++/4.9/iomanip
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/bits/vector.tcc
../headers//usr/include/c++/4.9/bits/stl_uninitialized.h
../headers//usr/include/c++/4.9/bits/move.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/c++/4.9/bits/stl_algo.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/c++/4.9/iostream
../headers//usr/include/c++/4.9/bits/cpp_type_traits.h
../headers//usr/include/c++/4.9/type_traits
../headers//usr/include/c++/4.9/bits/stl_pair.h
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/cstdint
../headers//usr/include/c++/4.9/bits/exception_ptr.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/initializer_list
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/bits/ostream.tcc
../headers//usr/include/c++/4.9/cmath
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/random.h
../headers//usr/include/c++/4.9/ctime
../headers//usr/include/c++/4.9/bits/ptr_traits.h
../headers//usr/include/c++/4.9/bits/alloc_traits.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/bits/postypes.h
../headers//usr/include/c++/4.9/bits/ostream_insert.h
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/ext/alloc_traits.h
../headers//usr/include/c++/4.9/ext/type_traits.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/stdint.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/bits/mathdef.h
../headers//usr/include/x86_64-linux-gnu/bits/confname.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/err.h
chomp.c
libraries
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/fastx_clipper.1.gz
fastx_artifacts_filter
compile units
fastx_artifacts_filter.c
Gimple
./fastx_artifacts_filter.c.004t.gimple
GKD
./fastx_artifacts_filter.o.gkd
OBJ
obj: ./fastx_artifacts_filter.o
fastx.c
Gimple
./fastx.c.004t.gimple
GKD
./fastx.o.gkd
OBJ
obj: ./fastx.o
fastx_args.c
Gimple
./fastx_args.c.004t.gimple
GKD
./fastx_args.o.gkd
OBJ
obj: ./fastx_args.o
chomp.c
Gimple
./chomp.c.004t.gimple
GKD
./chomp.o.gkd
OBJ
obj: ./chomp.o
includes
fastx_artifacts_filter.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers/../../src/libfastx/fastx.h
../headers/../../src/libfastx/fastx_args.h
../headers//usr/include/err.h
fastx.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
./fastx.h
../headers//usr/include/unistd.h
../headers//usr/include/err.h
./chomp.h
fastx_args.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./fastx_args.h
../headers//usr/include/getopt.h
../headers//usr/include/err.h
chomp.c
libraries
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/fastx_artifacts_filter.1.gz
fastq_quality_converter
compile units
fastq_quality_converter.c
Gimple
./fastq_quality_converter.c.004t.gimple
GKD
./fastq_quality_converter.o.gkd
OBJ
obj: ./fastq_quality_converter.o
fastx.c
Gimple
./fastx.c.004t.gimple
GKD
./fastx.o.gkd
OBJ
obj: ./fastx.o
fastx_args.c
Gimple
./fastx_args.c.004t.gimple
GKD
./fastx_args.o.gkd
OBJ
obj: ./fastx_args.o
chomp.c
Gimple
./chomp.c.004t.gimple
GKD
./chomp.o.gkd
OBJ
obj: ./chomp.o
includes
fastq_quality_converter.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers/../../src/libfastx/fastx.h
../headers/../../src/libfastx/fastx_args.h
../headers//usr/include/err.h
fastx.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
./fastx.h
../headers//usr/include/unistd.h
../headers//usr/include/err.h
./chomp.h
fastx_args.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./fastx_args.h
../headers//usr/include/getopt.h
../headers//usr/include/err.h
chomp.c
libraries
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/fastq_quality_converter.1.gz
fastq_masker
compile units
fastq_masker.c
Gimple
./fastq_masker.c.004t.gimple
GKD
./fastq_masker.o.gkd
OBJ
obj: ./fastq_masker.o
fastx.c
Gimple
./fastx.c.004t.gimple
GKD
./fastx.o.gkd
OBJ
obj: ./fastx.o
fastx_args.c
Gimple
./fastx_args.c.004t.gimple
GKD
./fastx_args.o.gkd
OBJ
obj: ./fastx_args.o
chomp.c
Gimple
./chomp.c.004t.gimple
GKD
./chomp.o.gkd
OBJ
obj: ./chomp.o
includes
fastq_masker.c
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers/../../src/libfastx/fastx.h
../headers/../../src/libfastx/fastx_args.h
../headers//usr/include/err.h
fastx.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
./fastx.h
../headers//usr/include/unistd.h
../headers//usr/include/err.h
./chomp.h
fastx_args.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./fastx_args.h
../headers//usr/include/getopt.h
../headers//usr/include/err.h
chomp.c
libraries
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/fastq_masker.1.gz
fasta_formatter
compile units
unassigned
fasta_formatter.cpp
Class
./fasta_formatter.cpp.002t.class
Gimple
./fasta_formatter.cpp.004t.gimple
GKD
./fasta_formatter.o.gkd
OBJ
obj: ./fasta_formatter.o
includes
unassigned
./sequence_writers.h
../headers//usr/include/c++/4.9/bits/basic_string.h
../headers//usr/include/c++/4.9/ext/atomicity.h
../headers//usr/include/c++/4.9/ostream
../headers//usr/include/c++/4.9/bits/basic_ios.h
../headers//usr/include/c++/4.9/bits/locale_facets.h
fasta_formatter.cpp
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/c++/4.9/bits/char_traits.h
../headers//usr/include/stdlib.h
../headers//usr/include/gtextutils/text_line_reader.h
../headers//usr/include/c++/4.9/sstream
../headers//usr/include/c++/4.9/streambuf
../headers//usr/include/c++/4.9/istream
../headers//usr/include/gtextutils/stream_wrapper.h
../headers//usr/include/c++/4.9/iostream
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/c++/4.9/cstddef
../headers//usr/include/c++/4.9/cstdlib
../headers//usr/include/c++/4.9/cwchar
../headers//usr/include/c++/4.9/bits/exception_ptr.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/c++config.h
../headers//usr/include/c++/4.9/cstdint
../headers//usr/include/c++/4.9/clocale
../headers//usr/include/c++/4.9/bits/allocator.h
../headers//usr/include/c++/4.9/cstdio
../headers//usr/include/c++/4.9/bits/basic_string.tcc
../headers//usr/include/c++/4.9/initializer_list
../headers//usr/include/c++/4.9/bits/stringfwd.h
../headers//usr/include/c++/4.9/bits/ios_base.h
../headers//usr/include/c++/4.9/cwctype
../headers//usr/include/c++/4.9/bits/ostream.tcc
../headers//usr/include/c++/4.9/bits/postypes.h
../headers//usr/include/c++/4.9/iosfwd
../headers//usr/include/c++/4.9/bits/stl_iterator_base_types.h
../headers//usr/include/c++/4.9/bits/functexcept.h
../headers//usr/include/c++/4.9/bits/ostream_insert.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib.h
../headers//usr/include/c++/4.9/debug/debug.h
../headers//usr/include/c++/4.9/bits/predefined_ops.h
../headers//usr/include/c++/4.9/ext/new_allocator.h
../headers//usr/include/c++/4.9/ext/numeric_traits.h
../headers//usr/include/c++/4.9/bits/stl_iterator.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/wchar.h
../headers//usr/include/x86_64-linux-gnu/bits/wchar2.h
../headers//usr/include/time.h
../headers//usr/include/stdint.h
../headers//usr/include/locale.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/atomic_word.h
../headers//usr/include/_G_config.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/wctype.h
../headers//usr/include/x86_64-linux-gnu/c++/4.9/bits/gthr-default.h
../headers//usr/include/c++/4.9/bits/stl_pair.h
../headers//usr/include/getopt.h
../headers//usr/include/c++/4.9/new
../headers//usr/include/err.h
libraries
../libs/usr/lib/x86_64-linux-gnu/libgtextutils-0.7.so.0
../libs/usr/lib/x86_64-linux-gnu/libstdc++.so.6
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libgcc_s.so.1
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/fasta_formatter.1.gz
fastx_quality_stats
compile units
fastx_quality_stats.c
Gimple
./fastx_quality_stats.c.004t.gimple
GKD
./fastx_quality_stats.o.gkd
OBJ
obj: ./fastx_quality_stats.o
fastx.c
Gimple
./fastx.c.004t.gimple
GKD
./fastx.o.gkd
OBJ
obj: ./fastx.o
fastx_args.c
Gimple
./fastx_args.c.004t.gimple
GKD
./fastx_args.o.gkd
OBJ
obj: ./fastx_args.o
chomp.c
Gimple
./chomp.c.004t.gimple
GKD
./chomp.o.gkd
OBJ
obj: ./chomp.o
includes
fastx_quality_stats.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers/../../src/libfastx/fastx.h
../headers/../../src/libfastx/fastx_args.h
../headers//usr/include/err.h
../headers//usr/include/stdlib.h
fastx.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
./fastx.h
../headers//usr/include/unistd.h
../headers//usr/include/err.h
./chomp.h
fastx_args.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./fastx_args.h
../headers//usr/include/getopt.h
../headers//usr/include/err.h
chomp.c
libraries
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/fastx_quality_stats.1.gz
fastx_reverse_complement
compile units
fastx_reverse_complement.c
Gimple
./fastx_reverse_complement.c.004t.gimple
GKD
./fastx_reverse_complement.o.gkd
OBJ
obj: ./fastx_reverse_complement.o
fastx.c
Gimple
./fastx.c.004t.gimple
GKD
./fastx.o.gkd
OBJ
obj: ./fastx.o
fastx_args.c
Gimple
./fastx_args.c.004t.gimple
GKD
./fastx_args.o.gkd
OBJ
obj: ./fastx_args.o
chomp.c
Gimple
./chomp.c.004t.gimple
GKD
./chomp.o.gkd
OBJ
obj: ./chomp.o
includes
fastx_reverse_complement.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers/../../src/libfastx/fastx.h
../headers/../../src/libfastx/fastx_args.h
../headers//usr/include/err.h
fastx.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
./fastx.h
../headers//usr/include/unistd.h
../headers//usr/include/err.h
./chomp.h
fastx_args.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./fastx_args.h
../headers//usr/include/getopt.h
../headers//usr/include/err.h
chomp.c
libraries
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/fastx_reverse_complement.1.gz
fastq_quality_trimmer
compile units
fastq_quality_trimmer.c
Gimple
./fastq_quality_trimmer.c.004t.gimple
GKD
./fastq_quality_trimmer.o.gkd
OBJ
obj: ./fastq_quality_trimmer.o
fastx.c
Gimple
./fastx.c.004t.gimple
GKD
./fastx.o.gkd
OBJ
obj: ./fastx.o
fastx_args.c
Gimple
./fastx_args.c.004t.gimple
GKD
./fastx_args.o.gkd
OBJ
obj: ./fastx_args.o
chomp.c
Gimple
./chomp.c.004t.gimple
GKD
./chomp.o.gkd
OBJ
obj: ./chomp.o
includes
fastq_quality_trimmer.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers/../../src/libfastx/fastx.h
../headers/../../src/libfastx/fastx_args.h
../headers//usr/include/stdlib.h
../headers//usr/include/err.h
fastx.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
./fastx.h
../headers//usr/include/unistd.h
../headers//usr/include/err.h
./chomp.h
fastx_args.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./fastx_args.h
../headers//usr/include/getopt.h
../headers//usr/include/err.h
chomp.c
libraries
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/fastq_quality_trimmer.1.gz
fastq_to_fasta
compile units
fastq_to_fasta.c
Gimple
./fastq_to_fasta.c.004t.gimple
GKD
./fastq_to_fasta.o.gkd
OBJ
obj: ./fastq_to_fasta.o
fastx.c
Gimple
./fastx.c.004t.gimple
GKD
./fastx.o.gkd
OBJ
obj: ./fastx.o
fastx_args.c
Gimple
./fastx_args.c.004t.gimple
GKD
./fastx_args.o.gkd
OBJ
obj: ./fastx_args.o
chomp.c
Gimple
./chomp.c.004t.gimple
GKD
./chomp.o.gkd
OBJ
obj: ./chomp.o
includes
fastq_to_fasta.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers/../../src/libfastx/fastx.h
../headers/../../src/libfastx/fastx_args.h
../headers//usr/include/err.h
fastx.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
./fastx.h
../headers//usr/include/unistd.h
../headers//usr/include/err.h
./chomp.h
fastx_args.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./fastx_args.h
../headers//usr/include/getopt.h
../headers//usr/include/err.h
chomp.c
libraries
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/fastq_to_fasta.1.gz