exonerate - amd64

Documentation

Binaries

recyclebin.test

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recyclebin.test.c

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OBJ

recyclebin.c

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OBJ

includes

recyclebin.test.c

recyclebin.c

libraries

manual

bootstrapper

compile units

bootstrapper.c

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OBJ

modeltype.c

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ungapped.c

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affine.c

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OBJ

est2genome.c

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OBJ

ner.c

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OBJ

protein2dna.c

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OBJ

protein2genome.c

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OBJ

coding2coding.c

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OBJ

coding2genome.c

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OBJ

genome2genome.c

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OBJ

cdna2genome.c

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OBJ

frameshift.c

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intron.c

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phase.c

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pqueue.c

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comparison.c

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hspset.c

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wordhood.c

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heuristic.c

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sdp.c

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scheduler.c

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straceback.c

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lookahead.c

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boundary.c

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slist.c

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rangetree.c

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OBJ

recyclebin.c

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OBJ

optimal.c

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OBJ

unassigned

viterbi.c

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layout.c

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codegen.c

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cgutil.c

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alignment.c

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region.c

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c4.c

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OBJ

subopt.c

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OBJ

match.c

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codonsubmat.c

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submat.c

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OBJ

sparsecache.c

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matrix.c

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sequence.c

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alphabet.c

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splice.c

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OBJ

translate.c

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argument.c

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OBJ

lineparse.c

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OBJ

includes

bootstrapper.c

modeltype.c

ungapped.c

affine.c

est2genome.c

ner.c

protein2dna.c

protein2genome.c

coding2coding.c

coding2genome.c

genome2genome.c

cdna2genome.c

frameshift.c

intron.c

phase.c

pqueue.c

comparison.c

hspset.c

wordhood.c

heuristic.c

sdp.c

scheduler.c

straceback.c

lookahead.c

boundary.c

slist.c

rangetree.c

recyclebin.c

optimal.c

unassigned

viterbi.c

layout.c

codegen.c

cgutil.c

alignment.c

region.c

c4.c

subopt.c

match.c

codonsubmat.c

submat.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

translate.test

compile units

translate.test.c

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OBJ

translate.c

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argument.c

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OBJ

includes

translate.test.c

translate.c

argument.c

libraries

manual

fastanrdb

compile units

fastanrdb.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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fastadb.c

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argument.c

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compoundfile.c

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lineparse.c

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sparsecache.c

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matrix.c

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includes

fastanrdb.c

sequence.c

alphabet.c

splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

wordhood.test

compile units

wordhood.test.c

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OBJ

wordhood.c

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submat.c

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codonsubmat.c

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sparsecache.c

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matrix.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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argument.c

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lineparse.c

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includes

wordhood.test.c

wordhood.c

submat.c

codonsubmat.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

affine.test

compile units

affine.test.c

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affine.c

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ungapped.c

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slist.c

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rangetree.c

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recyclebin.c

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optimal.c

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OBJ

unassigned

viterbi.c

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layout.c

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codegen.c

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cgutil.c

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alignment.c

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region.c

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c4.c

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subopt.c

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match.c

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codonsubmat.c

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submat.c

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sparsecache.c

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matrix.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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argument.c

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lineparse.c

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includes

affine.test.c

affine.c

ungapped.c

slist.c

rangetree.c

recyclebin.c

optimal.c

unassigned

viterbi.c

layout.c

codegen.c

cgutil.c

alignment.c

region.c

c4.c

subopt.c

match.c

codonsubmat.c

submat.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

alignment.test

compile units

alignment.test.c

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OBJ

alignment.c

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c4.c

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region.c

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match.c

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codonsubmat.c

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submat.c

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sparsecache.c

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matrix.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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argument.c

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lineparse.c

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includes

alignment.test.c

alignment.c

c4.c

region.c

match.c

codonsubmat.c

submat.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

pcr.test

compile units

pcr.test.c

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pcr.c

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wordhood.c

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submat.c

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codonsubmat.c

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fsm.c

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slist.c

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recyclebin.c

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sparsecache.c

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matrix.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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argument.c

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lineparse.c

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includes

pcr.test.c

pcr.c

wordhood.c

submat.c

codonsubmat.c

fsm.c

slist.c

recyclebin.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

fastaindex

compile units

fastaindex.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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fastadb.c

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argument.c

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compoundfile.c

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lineparse.c

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sparsecache.c

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matrix.c

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includes

fastaindex.c

sequence.c

alphabet.c

splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

argument.test

compile units

argument.test.c

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OBJ

argument.c

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includes

argument.test.c

argument.c

libraries

manual

dejavu.test

compile units

dejavu.test.c

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OBJ

dejavu.c

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includes

dejavu.test.c

dejavu.c

libraries

manual

opair.test

compile units

opair.test.c

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opair.c

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optimal.c

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c4.c

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alignment.c

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codegen.c

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region.c

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layout.c

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unassigned

viterbi.c

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subopt.c

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cgutil.c

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slist.c

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recyclebin.c

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rangetree.c

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match.c

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codonsubmat.c

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submat.c

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sparsecache.c

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matrix.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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argument.c

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lineparse.c

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includes

opair.test.c

opair.c

optimal.c

c4.c

alignment.c

codegen.c

region.c

layout.c

unassigned

viterbi.c

subopt.c

cgutil.c

slist.c

recyclebin.c

rangetree.c

match.c

codonsubmat.c

submat.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

fastasubseq

compile units

fastasubseq.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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fastadb.c

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argument.c

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compoundfile.c

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lineparse.c

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sparsecache.c

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matrix.c

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includes

fastasubseq.c

sequence.c

alphabet.c

splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

edit_distance.test

compile units

edit_distance.test.c

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edit_distance.c

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slist.c

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rangetree.c

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recyclebin.c

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optimal.c

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OBJ

unassigned

viterbi.c

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layout.c

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codegen.c

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cgutil.c

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alignment.c

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region.c

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c4.c

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subopt.c

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match.c

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codonsubmat.c

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submat.c

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sparsecache.c

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matrix.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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argument.c

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lineparse.c

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includes

edit_distance.test.c

edit_distance.c

slist.c

rangetree.c

recyclebin.c

optimal.c

unassigned

viterbi.c

layout.c

codegen.c

cgutil.c

alignment.c

region.c

c4.c

subopt.c

match.c

codonsubmat.c

submat.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

lookahead.test

compile units

lookahead.test.c

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OBJ

lookahead.c

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OBJ

includes

lookahead.test.c

lookahead.c

libraries

manual

alphabet.test

compile units

alphabet.test.c

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alphabet.c

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argument.c

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includes

alphabet.test.c

alphabet.c

argument.c

libraries

manual

coding2genome.test

compile units

coding2genome.test.c

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coding2genome.c

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coding2coding.c

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affine.c

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ungapped.c

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frameshift.c

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intron.c

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phase.c

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slist.c

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rangetree.c

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recyclebin.c

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optimal.c

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OBJ

unassigned

viterbi.c

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layout.c

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codegen.c

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cgutil.c

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alignment.c

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region.c

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c4.c

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subopt.c

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match.c

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codonsubmat.c

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submat.c

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sparsecache.c

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matrix.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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argument.c

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lineparse.c

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includes

coding2genome.test.c

coding2genome.c

coding2coding.c

affine.c

ungapped.c

frameshift.c

intron.c

phase.c

slist.c

rangetree.c

recyclebin.c

optimal.c

unassigned

viterbi.c

layout.c

codegen.c

cgutil.c

alignment.c

region.c

c4.c

subopt.c

match.c

codonsubmat.c

submat.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

fastaclean

compile units

fastaclean.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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fastadb.c

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argument.c

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compoundfile.c

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lineparse.c

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sparsecache.c

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matrix.c

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includes

fastaclean.c

sequence.c

alphabet.c

splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

sar.test

compile units

sar.test.c

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sar.c

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heuristic.c

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slist.c

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recyclebin.c

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rangetree.c

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match.c

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codonsubmat.c

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submat.c

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c4.c

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alignment.c

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optimal.c

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codegen.c

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region.c

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layout.c

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unassigned

viterbi.c

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subopt.c

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cgutil.c

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sparsecache.c

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matrix.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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argument.c

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lineparse.c

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includes

sar.test.c

sar.c

heuristic.c

slist.c

recyclebin.c

rangetree.c

match.c

codonsubmat.c

submat.c

c4.c

alignment.c

optimal.c

codegen.c

region.c

layout.c

unassigned

viterbi.c

subopt.c

cgutil.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

fastaexplode

compile units

fastaexplode.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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fastadb.c

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argument.c

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compoundfile.c

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lineparse.c

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sparsecache.c

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matrix.c

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includes

fastaexplode.c

sequence.c

alphabet.c

splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

fastaremove

compile units

fastaremove.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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fastadb.c

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argument.c

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compoundfile.c

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lineparse.c

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sparsecache.c

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matrix.c

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includes

fastaremove.c

sequence.c

alphabet.c

splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

fastareformat

compile units

fastareformat.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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fastadb.c

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argument.c

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compoundfile.c

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lineparse.c

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sparsecache.c

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matrix.c

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includes

fastareformat.c

sequence.c

alphabet.c

splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

dataset.test

compile units

dataset.test.c

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dataset.c

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fastadb.c

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compoundfile.c

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bitarray.c

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sparsecache.c

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matrix.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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argument.c

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lineparse.c

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includes

dataset.test.c

dataset.c

fastadb.c

compoundfile.c

bitarray.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

match.test

compile units

match.test.c

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match.c

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submat.c

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OBJ

codonsubmat.c

Gimple

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OBJ

sparsecache.c

Gimple

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OBJ

matrix.c

Gimple

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OBJ

sequence.c

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OBJ

alphabet.c

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OBJ

splice.c

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OBJ

translate.c

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OBJ

argument.c

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lineparse.c

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includes

match.test.c

match.c

submat.c

codonsubmat.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

fastatranslate

compile units

fastatranslate.c

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OBJ

sequence.c

Gimple

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OBJ

alphabet.c

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OBJ

splice.c

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translate.c

Gimple

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OBJ

fastadb.c

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OBJ

argument.c

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OBJ

compoundfile.c

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OBJ

lineparse.c

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OBJ

sparsecache.c

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OBJ

matrix.c

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includes

fastatranslate.c

sequence.c

alphabet.c

splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

cdna2genome.test

compile units

cdna2genome.test.c

Gimple

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cdna2genome.c

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affine.c

Gimple

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ungapped.c

Gimple

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frameshift.c

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intron.c

Gimple

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phase.c

Gimple

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OBJ

coding2coding.c

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coding2genome.c

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est2genome.c

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slist.c

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rangetree.c

Gimple

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OBJ

recyclebin.c

Gimple

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OBJ

optimal.c

Gimple

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OBJ

unassigned

viterbi.c

Gimple

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OBJ

layout.c

Gimple

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OBJ

codegen.c

Gimple

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OBJ

cgutil.c

Gimple

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OBJ

alignment.c

Gimple

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OBJ

region.c

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OBJ

c4.c

Gimple

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OBJ

subopt.c

Gimple

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match.c

Gimple

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OBJ

codonsubmat.c

Gimple

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OBJ

submat.c

Gimple

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OBJ

sparsecache.c

Gimple

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OBJ

matrix.c

Gimple

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OBJ

sequence.c

Gimple

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OBJ

alphabet.c

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OBJ

splice.c

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OBJ

translate.c

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argument.c

Gimple

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lineparse.c

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includes

cdna2genome.test.c

cdna2genome.c

affine.c

ungapped.c

frameshift.c

intron.c

phase.c

coding2coding.c

coding2genome.c

est2genome.c

slist.c

rangetree.c

recyclebin.c

optimal.c

unassigned

viterbi.c

layout.c

codegen.c

cgutil.c

alignment.c

region.c

c4.c

subopt.c

match.c

codonsubmat.c

submat.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

analysis.test

compile units

analysis.test.c

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analysis.c

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gam.c

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bsam.c

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hspset.c

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wordhood.c

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seeder.c

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comparison.c

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fastapipe.c

Gimple

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fastadb.c

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dejavu.c

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fsm.c

Gimple

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OBJ

vfsm.c

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OBJ

sparsecache.c

Gimple

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OBJ

compoundfile.c

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socket.c

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c4.c

Gimple

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codegen.c

Gimple

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OBJ

cgutil.c

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OBJ

opair.c

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OBJ

alignment.c

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OBJ

optimal.c

Gimple

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OBJ

unassigned

viterbi.c

Gimple

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OBJ

layout.c

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region.c

Gimple

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OBJ

subopt.c

Gimple

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OBJ

bsdp.c

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OBJ

sar.c

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OBJ

heuristic.c

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OBJ

hpair.c

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boundary.c

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sdp.c

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scheduler.c

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OBJ

straceback.c

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OBJ

lookahead.c

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OBJ

matrix.c

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slist.c

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pqueue.c

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OBJ

recyclebin.c

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OBJ

rangetree.c

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OBJ

sequence.c

Gimple

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OBJ

alphabet.c

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OBJ

translate.c

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splice.c

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OBJ

affine.c

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est2genome.c

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ner.c

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protein2dna.c

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protein2genome.c

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coding2coding.c

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coding2genome.c

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cdna2genome.c

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genome2genome.c

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ungapped.c

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intron.c

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frameshift.c

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phase.c

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modeltype.c

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argument.c

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lineparse.c

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match.c

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submat.c

Gimple

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codonsubmat.c

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OBJ

includes

analysis.test.c

analysis.c

gam.c

bsam.c

hspset.c

wordhood.c

seeder.c

comparison.c

fastapipe.c

fastadb.c

dejavu.c

fsm.c

vfsm.c

sparsecache.c

compoundfile.c

socket.c

c4.c

codegen.c

cgutil.c

opair.c

alignment.c

optimal.c

unassigned

viterbi.c

layout.c

region.c

subopt.c

bsdp.c

sar.c

heuristic.c

hpair.c

boundary.c

sdp.c

scheduler.c

straceback.c

lookahead.c

matrix.c

slist.c

pqueue.c

recyclebin.c

rangetree.c

sequence.c

alphabet.c

translate.c

splice.c

affine.c

est2genome.c

ner.c

protein2dna.c

protein2genome.c

coding2coding.c

coding2genome.c

cdna2genome.c

genome2genome.c

ungapped.c

intron.c

frameshift.c

phase.c

modeltype.c

argument.c

lineparse.c

match.c

submat.c

codonsubmat.c

libraries

manual

fsm.test

compile units

fsm.test.c

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fsm.c

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recyclebin.c

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OBJ

includes

fsm.test.c

fsm.c

recyclebin.c

libraries

manual

bitarray.test

compile units

bitarray.test.c

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bitarray.c

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includes

bitarray.test.c

bitarray.c

libraries

manual

region.test

compile units

region.test.c

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region.c

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includes

region.test.c

region.c

libraries

manual

ungapped.test

compile units

ungapped.test.c

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ungapped.c

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slist.c

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rangetree.c

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recyclebin.c

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OBJ

optimal.c

Gimple

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OBJ

unassigned

viterbi.c

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OBJ

layout.c

Gimple

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OBJ

codegen.c

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OBJ

cgutil.c

Gimple

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OBJ

alignment.c

Gimple

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region.c

Gimple

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c4.c

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OBJ

subopt.c

Gimple

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match.c

Gimple

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OBJ

codonsubmat.c

Gimple

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OBJ

submat.c

Gimple

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OBJ

sparsecache.c

Gimple

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OBJ

matrix.c

Gimple

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OBJ

sequence.c

Gimple

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OBJ

alphabet.c

Gimple

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OBJ

splice.c

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translate.c

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argument.c

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lineparse.c

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includes

ungapped.test.c

ungapped.c

slist.c

rangetree.c

recyclebin.c

optimal.c

unassigned

viterbi.c

layout.c

codegen.c

cgutil.c

alignment.c

region.c

c4.c

subopt.c

match.c

codonsubmat.c

submat.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

fastahardmask

compile units

fastahardmask.c

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OBJ

sequence.c

Gimple

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OBJ

alphabet.c

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OBJ

splice.c

Gimple

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OBJ

translate.c

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OBJ

fastadb.c

Gimple

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OBJ

argument.c

Gimple

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OBJ

compoundfile.c

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OBJ

lineparse.c

Gimple

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OBJ

sparsecache.c

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matrix.c

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includes

fastahardmask.c

sequence.c

alphabet.c

splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

slist.test

compile units

slist.test.c

Gimple

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OBJ

slist.c

Gimple

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OBJ

recyclebin.c

Gimple

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OBJ

includes

slist.test.c

slist.c

recyclebin.c

libraries

manual

est2genome.test

compile units

est2genome.test.c

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est2genome.c

Gimple

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OBJ

affine.c

Gimple

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ungapped.c

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intron.c

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slist.c

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OBJ

rangetree.c

Gimple

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OBJ

recyclebin.c

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OBJ

optimal.c

Gimple

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OBJ

unassigned

viterbi.c

Gimple

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OBJ

layout.c

Gimple

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OBJ

codegen.c

Gimple

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OBJ

cgutil.c

Gimple

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OBJ

alignment.c

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region.c

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c4.c

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OBJ

subopt.c

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match.c

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OBJ

codonsubmat.c

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OBJ

submat.c

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OBJ

sparsecache.c

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OBJ

matrix.c

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OBJ

sequence.c

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OBJ

alphabet.c

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OBJ

splice.c

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OBJ

translate.c

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OBJ

argument.c

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lineparse.c

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OBJ

includes

est2genome.test.c

est2genome.c

affine.c

ungapped.c

intron.c

slist.c

rangetree.c

recyclebin.c

optimal.c

unassigned

viterbi.c

layout.c

codegen.c

cgutil.c

alignment.c

region.c

c4.c

subopt.c

match.c

codonsubmat.c

submat.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

phase.test

compile units

phase.test.c

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OBJ

phase.c

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intron.c

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slist.c

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OBJ

rangetree.c

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OBJ

recyclebin.c

Gimple

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OBJ

optimal.c

Gimple

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OBJ

unassigned

viterbi.c

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OBJ

layout.c

Gimple

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OBJ

codegen.c

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OBJ

cgutil.c

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OBJ

alignment.c

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OBJ

region.c

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OBJ

c4.c

Gimple

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OBJ

subopt.c

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OBJ

match.c

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OBJ

codonsubmat.c

Gimple

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OBJ

submat.c

Gimple

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OBJ

sparsecache.c

Gimple

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OBJ

matrix.c

Gimple

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OBJ

sequence.c

Gimple

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OBJ

alphabet.c

Gimple

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OBJ

splice.c

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OBJ

translate.c

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OBJ

argument.c

Gimple

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OBJ

lineparse.c

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OBJ

includes

phase.test.c

phase.c

intron.c

slist.c

rangetree.c

recyclebin.c

optimal.c

unassigned

viterbi.c

layout.c

codegen.c

cgutil.c

alignment.c

region.c

c4.c

subopt.c

match.c

codonsubmat.c

submat.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

hpair.test

compile units

hpair.test.c

Gimple

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OBJ

hpair.c

Gimple

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OBJ

heuristic.c

Gimple

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OBJ

bsdp.c

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OBJ

sar.c

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OBJ

slist.c

Gimple

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OBJ

pqueue.c

Gimple

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OBJ

recyclebin.c

Gimple

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OBJ

hspset.c

Gimple

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OBJ

wordhood.c

Gimple

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OBJ

rangetree.c

Gimple

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OBJ

match.c

Gimple

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OBJ

codonsubmat.c

Gimple

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OBJ

submat.c

Gimple

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OBJ

c4.c

Gimple

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OBJ

alignment.c

Gimple

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OBJ

optimal.c

Gimple

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OBJ

codegen.c

Gimple

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OBJ

region.c

Gimple

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OBJ

layout.c

Gimple

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OBJ

unassigned

viterbi.c

Gimple

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OBJ

subopt.c

Gimple

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OBJ

cgutil.c

Gimple

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OBJ

sparsecache.c

Gimple

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OBJ

matrix.c

Gimple

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OBJ

sequence.c

Gimple

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OBJ

alphabet.c

Gimple

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OBJ

splice.c

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OBJ

translate.c

Gimple

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OBJ

argument.c

Gimple

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OBJ

lineparse.c

Gimple

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OBJ

includes

hpair.test.c

hpair.c

heuristic.c

bsdp.c

sar.c

slist.c

pqueue.c

recyclebin.c

hspset.c

wordhood.c

rangetree.c

match.c

codonsubmat.c

submat.c

c4.c

alignment.c

optimal.c

codegen.c

region.c

layout.c

unassigned

viterbi.c

subopt.c

cgutil.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

scheduler.test

compile units

scheduler.test.c

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scheduler.c

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OBJ

lookahead.c

Gimple

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OBJ

boundary.c

Gimple

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OBJ

straceback.c

Gimple

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OBJ

recyclebin.c

Gimple

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OBJ

slist.c

Gimple

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OBJ

rangetree.c

Gimple

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OBJ

match.c

Gimple

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OBJ

codonsubmat.c

Gimple

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OBJ

submat.c

Gimple

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OBJ

c4.c

Gimple

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OBJ

alignment.c

Gimple

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OBJ

optimal.c

Gimple

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OBJ

codegen.c

Gimple

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OBJ

region.c

Gimple

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OBJ

layout.c

Gimple

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OBJ

unassigned

viterbi.c

Gimple

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OBJ

subopt.c

Gimple

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OBJ

cgutil.c

Gimple

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OBJ

sparsecache.c

Gimple

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OBJ

matrix.c

Gimple

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OBJ

sequence.c

Gimple

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OBJ

alphabet.c

Gimple

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OBJ

splice.c

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OBJ

translate.c

Gimple

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OBJ

argument.c

Gimple

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OBJ

lineparse.c

Gimple

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OBJ

includes

scheduler.test.c

scheduler.c

lookahead.c

boundary.c

straceback.c

recyclebin.c

slist.c

rangetree.c

match.c

codonsubmat.c

submat.c

c4.c

alignment.c

optimal.c

codegen.c

region.c

layout.c

unassigned

viterbi.c

subopt.c

cgutil.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

fastapipe.test

compile units

fastapipe.test.c

Gimple

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OBJ

fastapipe.c

Gimple

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OBJ

fastadb.c

Gimple

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OBJ

compoundfile.c

Gimple

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OBJ

sparsecache.c

Gimple

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OBJ

matrix.c

Gimple

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OBJ

sequence.c

Gimple

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OBJ

alphabet.c

Gimple

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OBJ

splice.c

Gimple

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OBJ

translate.c

Gimple

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OBJ

argument.c

Gimple

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OBJ

lineparse.c

Gimple

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OBJ

includes

fastapipe.test.c

fastapipe.c

fastadb.c

compoundfile.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

subopt.test

compile units

subopt.test.c

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OBJ

subopt.c

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OBJ

region.c

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OBJ

rangetree.c

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OBJ

recyclebin.c

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OBJ

includes

subopt.test.c

subopt.c

region.c

rangetree.c

recyclebin.c

libraries

manual

fastaclip

compile units

fastaclip.c

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OBJ

sequence.c

Gimple

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OBJ

alphabet.c

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OBJ

splice.c

Gimple

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OBJ

translate.c

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OBJ

fastadb.c

Gimple

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OBJ

argument.c

Gimple

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OBJ

compoundfile.c

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OBJ

lineparse.c

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OBJ

sparsecache.c

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OBJ

matrix.c

Gimple

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OBJ

includes

fastaclip.c

sequence.c

alphabet.c

splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

ner.test

compile units

ner.test.c

Gimple

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OBJ

ner.c

Gimple

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OBJ

affine.c

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OBJ

ungapped.c

Gimple

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OBJ

slist.c

Gimple

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OBJ

rangetree.c

Gimple

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OBJ

recyclebin.c

Gimple

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OBJ

optimal.c

Gimple

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OBJ

unassigned

viterbi.c

Gimple

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OBJ

layout.c

Gimple

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OBJ

codegen.c

Gimple

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OBJ

cgutil.c

Gimple

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OBJ

alignment.c

Gimple

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OBJ

region.c

Gimple

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OBJ

c4.c

Gimple

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OBJ

subopt.c

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OBJ

match.c

Gimple

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OBJ

codonsubmat.c

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OBJ

submat.c

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OBJ

sparsecache.c

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OBJ

matrix.c

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OBJ

sequence.c

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OBJ

alphabet.c

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OBJ

splice.c

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OBJ

translate.c

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OBJ

argument.c

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OBJ

lineparse.c

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OBJ

includes

ner.test.c

ner.c

affine.c

ungapped.c

slist.c

rangetree.c

recyclebin.c

optimal.c

unassigned

viterbi.c

layout.c

codegen.c

cgutil.c

alignment.c

region.c

c4.c

subopt.c

match.c

codonsubmat.c

submat.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

bsdp.test

compile units

bsdp.test.c

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OBJ

bsdp.c

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OBJ

argument.c

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OBJ

pqueue.c

Gimple

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OBJ

recyclebin.c

Gimple

GKD

OBJ

includes

bsdp.test.c

bsdp.c

argument.c

pqueue.c

recyclebin.c

libraries

manual

fastachecksum

compile units

fastachecksum.c

Gimple

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OBJ

sequence.c

Gimple

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OBJ

alphabet.c

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OBJ

splice.c

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translate.c

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fastadb.c

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argument.c

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compoundfile.c

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lineparse.c

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sparsecache.c

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OBJ

matrix.c

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includes

fastachecksum.c

sequence.c

alphabet.c

splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

socket.test

compile units

socket.test.c

Gimple

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OBJ

socket.c

Gimple

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OBJ

includes

socket.test.c

socket.c

libraries

manual

coding2coding.test

compile units

coding2coding.test.c

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coding2coding.c

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affine.c

Gimple

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ungapped.c

Gimple

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frameshift.c

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slist.c

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rangetree.c

Gimple

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OBJ

recyclebin.c

Gimple

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OBJ

optimal.c

Gimple

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OBJ

unassigned

viterbi.c

Gimple

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layout.c

Gimple

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OBJ

codegen.c

Gimple

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OBJ

cgutil.c

Gimple

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OBJ

alignment.c

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region.c

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c4.c

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OBJ

subopt.c

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match.c

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OBJ

codonsubmat.c

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OBJ

submat.c

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OBJ

sparsecache.c

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OBJ

matrix.c

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sequence.c

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OBJ

alphabet.c

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OBJ

splice.c

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translate.c

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argument.c

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lineparse.c

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includes

coding2coding.test.c

coding2coding.c

affine.c

ungapped.c

frameshift.c

slist.c

rangetree.c

recyclebin.c

optimal.c

unassigned

viterbi.c

layout.c

codegen.c

cgutil.c

alignment.c

region.c

c4.c

subopt.c

match.c

codonsubmat.c

submat.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

esd2esi

compile units

esd2esi.c

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dataset.c

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index.c

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OBJ

bitarray.c

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vfsm.c

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pqueue.c

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recyclebin.c

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rangetree.c

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noitree.c

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splaytree.c

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submat.c

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codonsubmat.c

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wordhood.c

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hspset.c

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match.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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fastadb.c

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argument.c

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compoundfile.c

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OBJ

lineparse.c

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sparsecache.c

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matrix.c

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includes

esd2esi.c

dataset.c

index.c

bitarray.c

vfsm.c

pqueue.c

recyclebin.c

rangetree.c

noitree.c

splaytree.c

submat.c

codonsubmat.c

wordhood.c

hspset.c

match.c

sequence.c

alphabet.c

splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

compoundfile.test

compile units

compoundfile.test.c

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compoundfile.c

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includes

compoundfile.test.c

compoundfile.c

libraries

manual

fastasoftmask

compile units

fastasoftmask.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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fastadb.c

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argument.c

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compoundfile.c

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lineparse.c

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sparsecache.c

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matrix.c

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includes

fastasoftmask.c

sequence.c

alphabet.c

splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

exonerate

compile units

exonerate.c

Gimple

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OBJ

unassigned

viterbi.c

scheduler.c

wordhood.c

Gimple

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OBJ

hspset.c

Gimple

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seeder.c

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comparison.c

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fastapipe.c

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fastadb.c

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dejavu.c

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fsm.c

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vfsm.c

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sparsecache.c

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gam.c

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bsam.c

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analysis.c

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compoundfile.c

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c4.c

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codegen.c

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cgutil.c

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opair.c

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alignment.c

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optimal.c

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layout.c

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region.c

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subopt.c

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bsdp.c

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sar.c

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heuristic.c

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hpair.c

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boundary.c

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sdp.c

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lookahead.c

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straceback.c

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matrix.c

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slist.c

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pqueue.c

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recyclebin.c

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rangetree.c

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OBJ

sequence.c

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alphabet.c

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translate.c

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splice.c

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affine.c

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est2genome.c

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ner.c

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protein2dna.c

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protein2genome.c

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coding2coding.c

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coding2genome.c

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cdna2genome.c

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genome2genome.c

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ungapped.c

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intron.c

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frameshift.c

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phase.c

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modeltype.c

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argument.c

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lineparse.c

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socket.c

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match.c

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submat.c

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codonsubmat.c

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includes

exonerate.c

unassigned

viterbi.c

scheduler.c

wordhood.c

hspset.c

seeder.c

comparison.c

fastapipe.c

fastadb.c

dejavu.c

fsm.c

vfsm.c

sparsecache.c

gam.c

bsam.c

analysis.c

compoundfile.c

c4.c

codegen.c

cgutil.c

opair.c

alignment.c

optimal.c

layout.c

region.c

subopt.c

bsdp.c

sar.c

heuristic.c

hpair.c

boundary.c

sdp.c

lookahead.c

straceback.c

matrix.c

slist.c

pqueue.c

recyclebin.c

rangetree.c

sequence.c

alphabet.c

translate.c

splice.c

affine.c

est2genome.c

ner.c

protein2dna.c

protein2genome.c

coding2coding.c

coding2genome.c

cdna2genome.c

genome2genome.c

ungapped.c

intron.c

frameshift.c

phase.c

modeltype.c

argument.c

lineparse.c

socket.c

match.c

submat.c

codonsubmat.c

libraries

manual

comparison.test

compile units

comparison.test.c

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comparison.c

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OBJ

hspset.c

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OBJ

match.c

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wordhood.c

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submat.c

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codonsubmat.c

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recyclebin.c

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pqueue.c

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sparsecache.c

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matrix.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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argument.c

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lineparse.c

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includes

comparison.test.c

comparison.c

hspset.c

match.c

wordhood.c

submat.c

codonsubmat.c

recyclebin.c

pqueue.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

matrix.test

compile units

matrix.test.c

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OBJ

matrix.c

Gimple

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OBJ

includes

matrix.test.c

matrix.c

libraries

manual

protein2dna.test

compile units

protein2dna.test.c

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protein2dna.c

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affine.c

Gimple

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ungapped.c

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frameshift.c

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slist.c

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rangetree.c

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OBJ

recyclebin.c

Gimple

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OBJ

optimal.c

Gimple

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unassigned

viterbi.c

Gimple

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layout.c

Gimple

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codegen.c

Gimple

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OBJ

cgutil.c

Gimple

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alignment.c

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region.c

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c4.c

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subopt.c

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match.c

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codonsubmat.c

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OBJ

submat.c

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sparsecache.c

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matrix.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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argument.c

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lineparse.c

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includes

protein2dna.test.c

protein2dna.c

affine.c

ungapped.c

frameshift.c

slist.c

rangetree.c

recyclebin.c

optimal.c

unassigned

viterbi.c

layout.c

codegen.c

cgutil.c

alignment.c

region.c

c4.c

subopt.c

match.c

codonsubmat.c

submat.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

bsam.test

compile units

bsam.test.c

Gimple

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bsam.c

Gimple

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OBJ

argument.c

Gimple

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OBJ

lineparse.c

Gimple

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OBJ

hspset.c

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comparison.c

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match.c

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wordhood.c

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sequence.c

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alphabet.c

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translate.c

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submat.c

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codonsubmat.c

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splice.c

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dejavu.c

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pqueue.c

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sparsecache.c

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OBJ

recyclebin.c

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matrix.c

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includes

bsam.test.c

bsam.c

argument.c

lineparse.c

hspset.c

comparison.c

match.c

wordhood.c

sequence.c

alphabet.c

translate.c

submat.c

codonsubmat.c

splice.c

dejavu.c

pqueue.c

sparsecache.c

recyclebin.c

matrix.c

libraries

manual

fastarevcomp

compile units

fastarevcomp.c

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OBJ

sequence.c

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OBJ

alphabet.c

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OBJ

splice.c

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translate.c

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fastadb.c

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argument.c

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compoundfile.c

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OBJ

lineparse.c

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sparsecache.c

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matrix.c

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includes

fastarevcomp.c

sequence.c

alphabet.c

splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

codegen.test

compile units

codegen.test.c

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codegen.c

Gimple

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OBJ

argument.c

Gimple

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OBJ

includes

codegen.test.c

codegen.c

argument.c

libraries

manual

seeder.test

compile units

seeder.test.c

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seeder.c

Gimple

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OBJ

wordhood.c

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OBJ

hspset.c

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match.c

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comparison.c

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submat.c

Gimple

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codonsubmat.c

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OBJ

recyclebin.c

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fsm.c

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OBJ

vfsm.c

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OBJ

pqueue.c

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OBJ

sparsecache.c

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OBJ

matrix.c

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sequence.c

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OBJ

alphabet.c

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splice.c

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translate.c

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argument.c

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lineparse.c

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OBJ

includes

seeder.test.c

seeder.c

wordhood.c

hspset.c

match.c

comparison.c

submat.c

codonsubmat.c

recyclebin.c

fsm.c

vfsm.c

pqueue.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

fastaannotatecdna

compile units

fastaannotatecdna.c

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OBJ

sequence.c

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OBJ

alphabet.c

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OBJ

splice.c

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translate.c

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fastadb.c

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argument.c

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compoundfile.c

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OBJ

lineparse.c

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sparsecache.c

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matrix.c

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includes

fastaannotatecdna.c

sequence.c

alphabet.c

splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

intron.test

compile units

intron.test.c

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OBJ

intron.c

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OBJ

slist.c

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OBJ

rangetree.c

Gimple

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OBJ

recyclebin.c

Gimple

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OBJ

optimal.c

Gimple

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OBJ

unassigned

viterbi.c

Gimple

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OBJ

layout.c

Gimple

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OBJ

codegen.c

Gimple

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OBJ

cgutil.c

Gimple

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OBJ

alignment.c

Gimple

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OBJ

region.c

Gimple

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OBJ

c4.c

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subopt.c

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match.c

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codonsubmat.c

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OBJ

submat.c

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OBJ

sparsecache.c

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matrix.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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argument.c

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lineparse.c

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includes

intron.test.c

intron.c

slist.c

rangetree.c

recyclebin.c

optimal.c

unassigned

viterbi.c

layout.c

codegen.c

cgutil.c

alignment.c

region.c

c4.c

subopt.c

match.c

codonsubmat.c

submat.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

fastadb.test

compile units

fastadb.test.c

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OBJ

fastadb.c

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OBJ

compoundfile.c

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OBJ

sparsecache.c

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OBJ

matrix.c

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OBJ

sequence.c

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OBJ

alphabet.c

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splice.c

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OBJ

translate.c

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argument.c

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lineparse.c

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includes

fastadb.test.c

fastadb.c

compoundfile.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

fasta2esd

compile units

fasta2esd.c

Gimple

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OBJ

dataset.c

Gimple

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OBJ

bitarray.c

Gimple

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OBJ

sequence.c

Gimple

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OBJ

alphabet.c

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splice.c

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translate.c

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fastadb.c

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argument.c

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OBJ

compoundfile.c

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OBJ

lineparse.c

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OBJ

sparsecache.c

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OBJ

matrix.c

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OBJ

includes

fasta2esd.c

dataset.c

bitarray.c

sequence.c

alphabet.c

splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

fastaoverlap

compile units

fastaoverlap.c

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OBJ

sequence.c

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OBJ

alphabet.c

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OBJ

splice.c

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OBJ

translate.c

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OBJ

fastadb.c

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OBJ

argument.c

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OBJ

compoundfile.c

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OBJ

lineparse.c

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OBJ

sparsecache.c

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OBJ

matrix.c

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includes

fastaoverlap.c

sequence.c

alphabet.c

splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

hspset.test

compile units

hspset.test.c

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OBJ

hspset.c

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OBJ

match.c

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OBJ

wordhood.c

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OBJ

submat.c

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codonsubmat.c

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OBJ

pqueue.c

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OBJ

recyclebin.c

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OBJ

sparsecache.c

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OBJ

matrix.c

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OBJ

sequence.c

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OBJ

alphabet.c

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OBJ

splice.c

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OBJ

translate.c

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OBJ

argument.c

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OBJ

lineparse.c

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includes

hspset.test.c

hspset.c

match.c

wordhood.c

submat.c

codonsubmat.c

pqueue.c

recyclebin.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

sparsecache.test

compile units

sparsecache.test.c

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sparsecache.c

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includes

sparsecache.test.c

sparsecache.c

libraries

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cgutil.test

compile units

cgutil.test.c

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cgutil.c

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codegen.c

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c4.c

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region.c

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argument.c

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matrix.c

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includes

cgutil.test.c

cgutil.c

codegen.c

c4.c

region.c

argument.c

matrix.c

libraries

manual

rangetree.test

compile units

rangetree.test.c

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rangetree.c

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recyclebin.c

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includes

rangetree.test.c

rangetree.c

recyclebin.c

libraries

manual

lineparse.test

compile units

lineparse.test.c

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lineparse.c

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includes

lineparse.test.c

lineparse.c

libraries

manual

submat.test

compile units

submat.test.c

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submat.c

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includes

submat.test.c

submat.c

libraries

manual

fastasort

compile units

fastasort.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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fastadb.c

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argument.c

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compoundfile.c

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lineparse.c

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includes

fastasort.c

sequence.c

alphabet.c

splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

index.test

compile units

index.test.c

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index.c

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fastadb.c

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dataset.c

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compoundfile.c

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bitarray.c

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vfsm.c

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pqueue.c

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recyclebin.c

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rangetree.c

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splaytree.c

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noitree.c

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wordhood.c

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hspset.c

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match.c

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submat.c

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codonsubmat.c

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sparsecache.c

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matrix.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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argument.c

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includes

index.test.c

index.c

fastadb.c

dataset.c

compoundfile.c

bitarray.c

vfsm.c

pqueue.c

recyclebin.c

rangetree.c

splaytree.c

noitree.c

wordhood.c

hspset.c

match.c

submat.c

codonsubmat.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

sequence.test

compile units

sequence.test.c

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sequence.c

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alphabet.c

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translate.c

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matrix.c

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sparsecache.c

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argument.c

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includes

sequence.test.c

sequence.c

alphabet.c

translate.c

splice.c

matrix.c

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argument.c

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libraries

manual

heuristic.test

compile units

heuristic.test.c

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heuristic.c

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slist.c

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recyclebin.c

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match.c

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codonsubmat.c

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submat.c

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c4.c

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alignment.c

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optimal.c

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codegen.c

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region.c

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layout.c

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unassigned

viterbi.c

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subopt.c

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cgutil.c

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sparsecache.c

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matrix.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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argument.c

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includes

heuristic.test.c

heuristic.c

slist.c

recyclebin.c

rangetree.c

match.c

codonsubmat.c

submat.c

c4.c

alignment.c

optimal.c

codegen.c

region.c

layout.c

unassigned

viterbi.c

subopt.c

cgutil.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

splaytree.test

compile units

splaytree.test.c

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splaytree.c

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recyclebin.c

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includes

splaytree.test.c

splaytree.c

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libraries

manual

optimal.test

compile units

optimal.test.c

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optimal.c

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c4.c

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alignment.c

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codegen.c

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region.c

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layout.c

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unassigned

viterbi.c

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subopt.c

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cgutil.c

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slist.c

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recyclebin.c

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rangetree.c

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match.c

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codonsubmat.c

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submat.c

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sparsecache.c

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matrix.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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argument.c

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includes

optimal.test.c

optimal.c

c4.c

alignment.c

codegen.c

region.c

layout.c

unassigned

viterbi.c

subopt.c

cgutil.c

slist.c

recyclebin.c

rangetree.c

match.c

codonsubmat.c

submat.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

fastalength

compile units

fastalength.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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fastadb.c

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argument.c

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compoundfile.c

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lineparse.c

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sparsecache.c

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matrix.c

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includes

fastalength.c

sequence.c

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splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

vfsm.test

compile units

vfsm.test.c

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vfsm.c

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includes

vfsm.test.c

vfsm.c

libraries

manual

fastasplit

compile units

fastasplit.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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fastadb.c

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argument.c

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compoundfile.c

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lineparse.c

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sparsecache.c

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matrix.c

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includes

fastasplit.c

sequence.c

alphabet.c

splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

fastavalidcds

compile units

fastavalidcds.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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fastadb.c

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argument.c

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compoundfile.c

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lineparse.c

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sparsecache.c

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matrix.c

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includes

fastavalidcds.c

sequence.c

alphabet.c

splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

genome2genome.test

compile units

genome2genome.test.c

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genome2genome.c

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coding2coding.c

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affine.c

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ungapped.c

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frameshift.c

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intron.c

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phase.c

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coding2genome.c

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cdna2genome.c

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est2genome.c

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slist.c

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rangetree.c

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recyclebin.c

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optimal.c

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unassigned

viterbi.c

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layout.c

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codegen.c

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cgutil.c

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alignment.c

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region.c

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c4.c

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subopt.c

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match.c

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codonsubmat.c

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submat.c

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sparsecache.c

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matrix.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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argument.c

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includes

genome2genome.test.c

genome2genome.c

coding2coding.c

affine.c

ungapped.c

frameshift.c

intron.c

phase.c

coding2genome.c

cdna2genome.c

est2genome.c

slist.c

rangetree.c

recyclebin.c

optimal.c

unassigned

viterbi.c

layout.c

codegen.c

cgutil.c

alignment.c

region.c

c4.c

subopt.c

match.c

codonsubmat.c

submat.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

exonerate-server

compile units

exonerate-server.c

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socket.c

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argument.c

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hspset.c

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match.c

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wordhood.c

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dataset.c

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index.c

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fastadb.c

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bitarray.c

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sparsecache.c

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matrix.c

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splaytree.c

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noitree.c

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vfsm.c

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pqueue.c

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rangetree.c

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recyclebin.c

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sequence.c

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alphabet.c

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translate.c

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splice.c

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submat.c

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codonsubmat.c

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compoundfile.c

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lineparse.c

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includes

exonerate-server.c

socket.c

argument.c

hspset.c

match.c

wordhood.c

dataset.c

index.c

fastadb.c

bitarray.c

sparsecache.c

matrix.c

splaytree.c

noitree.c

vfsm.c

pqueue.c

rangetree.c

recyclebin.c

sequence.c

alphabet.c

translate.c

splice.c

submat.c

codonsubmat.c

compoundfile.c

lineparse.c

libraries

manual

fastacomposition

compile units

fastacomposition.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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fastadb.c

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argument.c

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compoundfile.c

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lineparse.c

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matrix.c

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includes

fastacomposition.c

sequence.c

alphabet.c

splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

splice.test

compile units

splice.test.c

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splice.c

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matrix.c

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sparsecache.c

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argument.c

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lineparse.c

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includes

splice.test.c

splice.c

matrix.c

sparsecache.c

argument.c

lineparse.c

libraries

manual

modeltype.test

compile units

modeltype.test.c

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modeltype.c

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ungapped.c

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affine.c

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est2genome.c

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ner.c

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protein2dna.c

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protein2genome.c

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coding2coding.c

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coding2genome.c

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genome2genome.c

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cdna2genome.c

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frameshift.c

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phase.c

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intron.c

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slist.c

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rangetree.c

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recyclebin.c

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optimal.c

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unassigned

viterbi.c

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layout.c

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codegen.c

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cgutil.c

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alignment.c

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region.c

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c4.c

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subopt.c

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match.c

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codonsubmat.c

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submat.c

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sparsecache.c

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matrix.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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argument.c

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lineparse.c

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includes

modeltype.test.c

modeltype.c

ungapped.c

affine.c

est2genome.c

ner.c

protein2dna.c

protein2genome.c

coding2coding.c

coding2genome.c

genome2genome.c

cdna2genome.c

frameshift.c

phase.c

intron.c

slist.c

rangetree.c

recyclebin.c

optimal.c

unassigned

viterbi.c

layout.c

codegen.c

cgutil.c

alignment.c

region.c

c4.c

subopt.c

match.c

codonsubmat.c

submat.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

protein2genome.test

compile units

protein2genome.test.c

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protein2genome.c

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protein2dna.c

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ungapped.c

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intron.c

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affine.c

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frameshift.c

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phase.c

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slist.c

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rangetree.c

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recyclebin.c

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optimal.c

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unassigned

viterbi.c

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layout.c

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codegen.c

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cgutil.c

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alignment.c

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region.c

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c4.c

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subopt.c

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match.c

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codonsubmat.c

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submat.c

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sparsecache.c

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matrix.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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argument.c

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lineparse.c

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includes

protein2genome.test.c

protein2genome.c

protein2dna.c

ungapped.c

intron.c

affine.c

frameshift.c

phase.c

slist.c

rangetree.c

recyclebin.c

optimal.c

unassigned

viterbi.c

layout.c

codegen.c

cgutil.c

alignment.c

region.c

c4.c

subopt.c

match.c

codonsubmat.c

submat.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

frameshift.test

compile units

frameshift.test.c

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frameshift.c

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slist.c

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rangetree.c

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recyclebin.c

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optimal.c

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unassigned

viterbi.c

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layout.c

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codegen.c

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cgutil.c

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alignment.c

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region.c

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c4.c

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subopt.c

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match.c

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codonsubmat.c

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submat.c

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sparsecache.c

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matrix.c

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sequence.c

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alphabet.c

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splice.c

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translate.c

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argument.c

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lineparse.c

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includes

frameshift.test.c

frameshift.c

slist.c

rangetree.c

recyclebin.c

optimal.c

unassigned

viterbi.c

layout.c

codegen.c

cgutil.c

alignment.c

region.c

c4.c

subopt.c

match.c

codonsubmat.c

submat.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

viterbi.test

compile units

viterbi.test.c

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unassigned

viterbi.c

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c4.c

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region.c

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alignment.c

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codegen.c

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layout.c

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subopt.c

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cgutil.c

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slist.c

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recyclebin.c

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rangetree.c

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match.c

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OBJ

codonsubmat.c

Gimple

GKD

OBJ

submat.c

Gimple

GKD

OBJ

sparsecache.c

Gimple

GKD

OBJ

matrix.c

Gimple

GKD

OBJ

sequence.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

splice.c

Gimple

GKD

OBJ

translate.c

Gimple

GKD

OBJ

argument.c

Gimple

GKD

OBJ

lineparse.c

Gimple

GKD

OBJ

includes

viterbi.test.c

unassigned

viterbi.c

c4.c

region.c

alignment.c

codegen.c

layout.c

subopt.c

cgutil.c

slist.c

recyclebin.c

rangetree.c

match.c

codonsubmat.c

submat.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

c4.test

compile units

c4.test.c

Gimple

GKD

OBJ

c4.c

Gimple

GKD

OBJ

region.c

Gimple

GKD

OBJ

matrix.c

Gimple

GKD

OBJ

includes

c4.test.c

c4.c

region.c

matrix.c

libraries

manual

straceback.test

compile units

straceback.test.c

Gimple

GKD

OBJ

straceback.c

Gimple

GKD

OBJ

recyclebin.c

Gimple

GKD

OBJ

slist.c

Gimple

GKD

OBJ

rangetree.c

Gimple

GKD

OBJ

c4.c

Gimple

GKD

OBJ

alignment.c

Gimple

GKD

OBJ

optimal.c

Gimple

GKD

OBJ

codegen.c

Gimple

GKD

OBJ

region.c

Gimple

GKD

OBJ

layout.c

Gimple

GKD

OBJ

unassigned

viterbi.c

Gimple

GKD

OBJ

subopt.c

Gimple

GKD

OBJ

cgutil.c

Gimple

GKD

OBJ

sparsecache.c

Gimple

GKD

OBJ

matrix.c

Gimple

GKD

OBJ

sequence.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

splice.c

Gimple

GKD

OBJ

translate.c

Gimple

GKD

OBJ

argument.c

Gimple

GKD

OBJ

lineparse.c

Gimple

GKD

OBJ

includes

straceback.test.c

straceback.c

recyclebin.c

slist.c

rangetree.c

c4.c

alignment.c

optimal.c

codegen.c

region.c

layout.c

unassigned

viterbi.c

subopt.c

cgutil.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual

boundary.test

compile units

boundary.test.c

Gimple

GKD

OBJ

boundary.c

Gimple

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OBJ

argument.c

Gimple

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OBJ

region.c

Gimple

GKD

OBJ

includes

boundary.test.c

boundary.c

argument.c

region.c

libraries

manual

gam.test

compile units

gam.test.c

Gimple

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OBJ

gam.c

Gimple

GKD

OBJ

hspset.c

Gimple

GKD

OBJ

comparison.c

Gimple

GKD

OBJ

wordhood.c

Gimple

GKD

OBJ

sparsecache.c

Gimple

GKD

OBJ

compoundfile.c

Gimple

GKD

OBJ

c4.c

Gimple

GKD

OBJ

codegen.c

Gimple

GKD

OBJ

cgutil.c

Gimple

GKD

OBJ

opair.c

Gimple

GKD

OBJ

alignment.c

Gimple

GKD

OBJ

optimal.c

Gimple

GKD

OBJ

unassigned

viterbi.c

Gimple

GKD

OBJ

layout.c

Gimple

GKD

OBJ

region.c

Gimple

GKD

OBJ

subopt.c

Gimple

GKD

OBJ

bsdp.c

Gimple

GKD

OBJ

sar.c

Gimple

GKD

OBJ

heuristic.c

Gimple

GKD

OBJ

hpair.c

Gimple

GKD

OBJ

boundary.c

Gimple

GKD

OBJ

sdp.c

Gimple

GKD

OBJ

scheduler.c

Gimple

GKD

OBJ

straceback.c

Gimple

GKD

OBJ

lookahead.c

Gimple

GKD

OBJ

matrix.c

Gimple

GKD

OBJ

slist.c

Gimple

GKD

OBJ

pqueue.c

Gimple

GKD

OBJ

recyclebin.c

Gimple

GKD

OBJ

rangetree.c

Gimple

GKD

OBJ

sequence.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

translate.c

Gimple

GKD

OBJ

splice.c

Gimple

GKD

OBJ

affine.c

Gimple

GKD

OBJ

est2genome.c

Gimple

GKD

OBJ

ner.c

Gimple

GKD

OBJ

protein2dna.c

Gimple

GKD

OBJ

protein2genome.c

Gimple

GKD

OBJ

coding2coding.c

Gimple

GKD

OBJ

coding2genome.c

Gimple

GKD

OBJ

cdna2genome.c

Gimple

GKD

OBJ

genome2genome.c

Gimple

GKD

OBJ

ungapped.c

Gimple

GKD

OBJ

intron.c

Gimple

GKD

OBJ

frameshift.c

Gimple

GKD

OBJ

phase.c

Gimple

GKD

OBJ

modeltype.c

Gimple

GKD

OBJ

argument.c

Gimple

GKD

OBJ

lineparse.c

Gimple

GKD

OBJ

match.c

Gimple

GKD

OBJ

submat.c

Gimple

GKD

OBJ

codonsubmat.c

Gimple

GKD

OBJ

includes

gam.test.c

gam.c

hspset.c

comparison.c

wordhood.c

sparsecache.c

compoundfile.c

c4.c

codegen.c

cgutil.c

opair.c

alignment.c

optimal.c

unassigned

viterbi.c

layout.c

region.c

subopt.c

bsdp.c

sar.c

heuristic.c

hpair.c

boundary.c

sdp.c

scheduler.c

straceback.c

lookahead.c

matrix.c

slist.c

pqueue.c

recyclebin.c

rangetree.c

sequence.c

alphabet.c

translate.c

splice.c

affine.c

est2genome.c

ner.c

protein2dna.c

protein2genome.c

coding2coding.c

coding2genome.c

cdna2genome.c

genome2genome.c

ungapped.c

intron.c

frameshift.c

phase.c

modeltype.c

argument.c

lineparse.c

match.c

submat.c

codonsubmat.c

libraries

manual

codonsubmat.test

compile units

codonsubmat.test.c

Gimple

GKD

OBJ

codonsubmat.c

Gimple

GKD

OBJ

argument.c

Gimple

GKD

OBJ

includes

codonsubmat.test.c

codonsubmat.c

argument.c

libraries

manual

layout.test

compile units

layout.test.c

Gimple

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OBJ

layout.c

Gimple

GKD

OBJ

matrix.c

Gimple

GKD

OBJ

includes

layout.test.c

layout.c

matrix.c

libraries

manual

noitree.test

compile units

noitree.test.c

Gimple

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OBJ

noitree.c

Gimple

GKD

OBJ

recyclebin.c

Gimple

GKD

OBJ

splaytree.c

Gimple

GKD

OBJ

includes

noitree.test.c

noitree.c

recyclebin.c

splaytree.c

libraries

manual

fastadiff

compile units

fastadiff.c

Gimple

GKD

OBJ

sequence.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

splice.c

Gimple

GKD

OBJ

translate.c

Gimple

GKD

OBJ

fastadb.c

Gimple

GKD

OBJ

argument.c

Gimple

GKD

OBJ

compoundfile.c

Gimple

GKD

OBJ

lineparse.c

Gimple

GKD

OBJ

sparsecache.c

Gimple

GKD

OBJ

matrix.c

Gimple

GKD

OBJ

includes

fastadiff.c

sequence.c

alphabet.c

splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

fastafetch

compile units

fastafetch.c

Gimple

GKD

OBJ

sequence.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

splice.c

Gimple

GKD

OBJ

translate.c

Gimple

GKD

OBJ

fastadb.c

Gimple

GKD

OBJ

argument.c

Gimple

GKD

OBJ

compoundfile.c

Gimple

GKD

OBJ

lineparse.c

Gimple

GKD

OBJ

sparsecache.c

Gimple

GKD

OBJ

matrix.c

Gimple

GKD

OBJ

includes

fastafetch.c

sequence.c

alphabet.c

splice.c

translate.c

fastadb.c

argument.c

compoundfile.c

lineparse.c

sparsecache.c

matrix.c

libraries

manual

pqueue.test

compile units

pqueue.test.c

Gimple

GKD

OBJ

pqueue.c

Gimple

GKD

OBJ

recyclebin.c

Gimple

GKD

OBJ

includes

pqueue.test.c

pqueue.c

recyclebin.c

libraries

manual

ipcress

compile units

ipcress.c

Gimple

GKD

OBJ

pcr.c

Gimple

GKD

OBJ

wordhood.c

Gimple

GKD

OBJ

fastadb.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

sequence.c

Gimple

GKD

OBJ

splice.c

Gimple

GKD

OBJ

translate.c

Gimple

GKD

OBJ

submat.c

Gimple

GKD

OBJ

codonsubmat.c

Gimple

GKD

OBJ

fsm.c

Gimple

GKD

OBJ

slist.c

Gimple

GKD

OBJ

matrix.c

Gimple

GKD

OBJ

recyclebin.c

Gimple

GKD

OBJ

sparsecache.c

Gimple

GKD

OBJ

lineparse.c

Gimple

GKD

OBJ

argument.c

Gimple

GKD

OBJ

compoundfile.c

Gimple

GKD

OBJ

includes

ipcress.c

pcr.c

wordhood.c

fastadb.c

alphabet.c

sequence.c

splice.c

translate.c

submat.c

codonsubmat.c

fsm.c

slist.c

matrix.c

recyclebin.c

sparsecache.c

lineparse.c

argument.c

compoundfile.c

libraries

manual

sdp.test

compile units

sdp.test.c

Gimple

GKD

OBJ

sdp.c

Gimple

GKD

OBJ

boundary.c

Gimple

GKD

OBJ

scheduler.c

Gimple

GKD

OBJ

lookahead.c

Gimple

GKD

OBJ

straceback.c

Gimple

GKD

OBJ

pqueue.c

Gimple

GKD

OBJ

recyclebin.c

Gimple

GKD

OBJ

slist.c

Gimple

GKD

OBJ

rangetree.c

Gimple

GKD

OBJ

hspset.c

Gimple

GKD

OBJ

comparison.c

Gimple

GKD

OBJ

wordhood.c

Gimple

GKD

OBJ

match.c

Gimple

GKD

OBJ

codonsubmat.c

Gimple

GKD

OBJ

submat.c

Gimple

GKD

OBJ

c4.c

Gimple

GKD

OBJ

alignment.c

Gimple

GKD

OBJ

optimal.c

Gimple

GKD

OBJ

codegen.c

Gimple

GKD

OBJ

region.c

Gimple

GKD

OBJ

layout.c

Gimple

GKD

OBJ

unassigned

viterbi.c

Gimple

GKD

OBJ

subopt.c

Gimple

GKD

OBJ

cgutil.c

Gimple

GKD

OBJ

sparsecache.c

Gimple

GKD

OBJ

matrix.c

Gimple

GKD

OBJ

sequence.c

Gimple

GKD

OBJ

alphabet.c

Gimple

GKD

OBJ

splice.c

Gimple

GKD

OBJ

translate.c

Gimple

GKD

OBJ

argument.c

Gimple

GKD

OBJ

lineparse.c

Gimple

GKD

OBJ

includes

sdp.test.c

sdp.c

boundary.c

scheduler.c

lookahead.c

straceback.c

pqueue.c

recyclebin.c

slist.c

rangetree.c

hspset.c

comparison.c

wordhood.c

match.c

codonsubmat.c

submat.c

c4.c

alignment.c

optimal.c

codegen.c

region.c

layout.c

unassigned

viterbi.c

subopt.c

cgutil.c

sparsecache.c

matrix.c

sequence.c

alphabet.c

splice.c

translate.c

argument.c

lineparse.c

libraries

manual