bwa - amd64
Documentation
./doc/copyright
./doc/README.md.gz
./doc/changelog.Debian.gz
./doc/NEWS.Debian.gz
./doc/changelog.gz
Binaries
bwa
compile units
QSufSort.c
Gimple
./QSufSort.c.004t.gimple
GKD
./QSufSort.o.gkd
OBJ
obj: ./QSufSort.o
bwt_gen.c
Gimple
./bwt_gen.c.004t.gimple
GKD
./bwt_gen.o.gkd
OBJ
obj: ./bwt_gen.o
bwase.c
Gimple
./bwase.c.004t.gimple
GKD
./bwase.o.gkd
OBJ
obj: ./bwase.o
bwaseqio.c
Gimple
./bwaseqio.c.004t.gimple
GKD
./bwaseqio.o.gkd
OBJ
obj: ./bwaseqio.o
bwtgap.c
Gimple
./bwtgap.c.004t.gimple
GKD
./bwtgap.o.gkd
OBJ
obj: ./bwtgap.o
bwtaln.c
Gimple
./bwtaln.c.004t.gimple
GKD
./bwtaln.o.gkd
OBJ
obj: ./bwtaln.o
bamlite.c
Gimple
./bamlite.c.004t.gimple
GKD
./bamlite.o.gkd
OBJ
obj: ./bamlite.o
is.c
Gimple
./is.c.004t.gimple
GKD
./is.o.gkd
OBJ
obj: ./is.o
bwtindex.c
Gimple
./bwtindex.c.004t.gimple
GKD
./bwtindex.o.gkd
OBJ
obj: ./bwtindex.o
bwape.c
Gimple
./bwape.c.004t.gimple
GKD
./bwape.o.gkd
OBJ
obj: ./bwape.o
kopen.c
Gimple
./kopen.c.004t.gimple
GKD
./kopen.o.gkd
OBJ
obj: ./kopen.o
pemerge.c
Gimple
./pemerge.c.004t.gimple
GKD
./pemerge.o.gkd
OBJ
obj: ./pemerge.o
bwtsw2_core.c
Gimple
./bwtsw2_core.c.004t.gimple
GKD
./bwtsw2_core.o.gkd
OBJ
obj: ./bwtsw2_core.o
bwtsw2_main.c
Gimple
./bwtsw2_main.c.004t.gimple
GKD
./bwtsw2_main.o.gkd
OBJ
obj: ./bwtsw2_main.o
bwtsw2_aux.c
Gimple
./bwtsw2_aux.c.004t.gimple
GKD
./bwtsw2_aux.o.gkd
OBJ
obj: ./bwtsw2_aux.o
bwt_lite.c
Gimple
./bwt_lite.c.004t.gimple
GKD
./bwt_lite.o.gkd
OBJ
obj: ./bwt_lite.o
bwtsw2_chain.c
Gimple
./bwtsw2_chain.c.004t.gimple
GKD
./bwtsw2_chain.o.gkd
OBJ
obj: ./bwtsw2_chain.o
fastmap.c
Gimple
./fastmap.c.004t.gimple
GKD
./fastmap.o.gkd
OBJ
obj: ./fastmap.o
bwtsw2_pair.c
Gimple
./bwtsw2_pair.c.004t.gimple
GKD
./bwtsw2_pair.o.gkd
OBJ
obj: ./bwtsw2_pair.o
main.c
Gimple
./main.c.004t.gimple
GKD
./main.o.gkd
OBJ
obj: ./main.o
utils.c
Gimple
./utils.c.004t.gimple
GKD
./utils.o.gkd
OBJ
obj: ./utils.o
kstring.c
Gimple
./kstring.c.004t.gimple
GKD
./kstring.o.gkd
OBJ
obj: ./kstring.o
ksw.c
Gimple
./ksw.c.004t.gimple
GKD
./ksw.o.gkd
OBJ
obj: ./ksw.o
bwt.c
Gimple
./bwt.c.004t.gimple
GKD
./bwt.o.gkd
OBJ
obj: ./bwt.o
bntseq.c
Gimple
./bntseq.c.004t.gimple
GKD
./bntseq.o.gkd
OBJ
obj: ./bntseq.o
bwa.c
Gimple
./bwa.c.004t.gimple
GKD
./bwa.o.gkd
OBJ
obj: ./bwa.o
bwamem.c
Gimple
./bwamem.c.004t.gimple
GKD
./bwamem.o.gkd
OBJ
obj: ./bwamem.o
bwamem_pair.c
Gimple
./bwamem_pair.c.004t.gimple
GKD
./bwamem_pair.o.gkd
OBJ
obj: ./bwamem_pair.o
bwamem_extra.c
Gimple
./bwamem_extra.c.004t.gimple
GKD
./bwamem_extra.o.gkd
OBJ
obj: ./bwamem_extra.o
kthread.c
Gimple
./kthread.c.004t.gimple
GKD
./kthread.o.gkd
OBJ
obj: ./kthread.o
includes
QSufSort.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
./QSufSort.h
../headers//usr/include/stdio.h
bwt_gen.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
./QSufSort.h
../headers//usr/include/stdlib.h
../headers//usr/include/assert.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
bwase.c
./bntseq.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./kstring.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
./bwt.h
./bwtaln.h
../headers//usr/include/getopt.h
./bwa.h
./ksw.h
../headers//usr/include/assert.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
./utils.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
bwaseqio.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/zlib.h
../headers//usr/include/stdint.h
./bwt.h
./bwtaln.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./bamlite.h
./kseq.h
../headers//usr/include/stdlib.h
./utils.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
bwtgap.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
./bwt.h
./bwtaln.h
./bwtgap.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
bwtaln.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdint.h
./bwt.h
./bwtaln.h
./bwtgap.h
../headers//usr/include/getopt.h
../headers//usr/include/string.h
../headers//usr/include/pthread.h
./utils.h
./bwa.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
bamlite.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
./bamlite.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
is.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/stdlib.h
bwtindex.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/zlib.h
../headers//usr/include/stdint.h
./bntseq.h
./bwt.h
../headers//usr/include/getopt.h
./utils.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/string.h
bwape.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./utils.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./bwt.h
./bwtaln.h
./bntseq.h
./ksw.h
./khash.h
../headers//usr/include/getopt.h
./bwase.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
./bwa.h
kopen.c
../headers//usr/include/x86_64-linux-gnu/bits/unistd.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/fcntl2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/fcntl.h
../headers//usr/include/unistd.h
../headers//usr/include/x86_64-linux-gnu/bits/time.h
../headers//usr/include/x86_64-linux-gnu/sys/select.h
../headers//usr/include/x86_64-linux-gnu/bits/sockaddr.h
../headers//usr/include/x86_64-linux-gnu/bits/socket.h
../headers//usr/include/netdb.h
../headers//usr/include/x86_64-linux-gnu/bits/select2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/ctype.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/sys/socket.h
../headers//usr/include/x86_64-linux-gnu/sys/wait.h
../headers//usr/include/signal.h
../headers//usr/include/x86_64-linux-gnu/bits/socket_type.h
pemerge.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/zlib.h
../headers//usr/include/stdint.h
./ksw.h
./kseq.h
./bwa.h
../headers//usr/include/getopt.h
./bntseq.h
../headers//usr/include/pthread.h
./utils.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
bwtsw2_core.c
./bntseq.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/time.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/bits/resource.h
../headers//usr/include/x86_64-linux-gnu/sys/resource.h
../headers//usr/include/stdint.h
./bwt_lite.h
./bwt.h
./bwtsw2.h
./khash.h
./ksort.h
../headers//usr/include/stdlib.h
../headers//usr/include/assert.h
bwtsw2_main.c
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./bwt.h
./bntseq.h
./bwtsw2.h
./bwa.h
../headers//usr/include/getopt.h
./utils.h
bwtsw2_aux.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./kstring.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
../headers//usr/include/zlib.h
./bntseq.h
./bwt_lite.h
./bwt.h
./bwtsw2.h
./bwa.h
./ksort.h
../headers//usr/include/stdlib.h
./ksw.h
../headers//usr/include/pthread.h
./utils.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
bwt_lite.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./bwt_lite.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
bwtsw2_chain.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./bwt.h
./bwtsw2.h
./ksort.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
fastmap.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
./bntseq.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/zlib.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./bwt.h
./bwa.h
./bwamem.h
./kseq.h
../headers//usr/include/getopt.h
./utils.h
../headers//usr/include/ctype.h
bwtsw2_pair.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
./bwt.h
./bntseq.h
./bwtsw2.h
./kstring.h
./ksw.h
../headers//usr/include/stdlib.h
./utils.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
main.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./kstring.h
./utils.h
../headers//usr/include/stdlib.h
utils.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/time.h
../headers//usr/include/x86_64-linux-gnu/zconf.h
../headers//usr/include/zlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/resource.h
../headers//usr/include/x86_64-linux-gnu/sys/resource.h
../headers//usr/include/x86_64-linux-gnu/sys/time.h
../headers//usr/include/stdint.h
./utils.h
./ksort.h
./kseq.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/ctype.h
../headers//usr/include/unistd.h
kstring.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./kstring.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
ksw.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/emmintrin.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdint.h
./ksw.h
../headers//usr/include/stdlib.h
../headers//usr/include/assert.h
bwt.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./bwt.h
./utils.h
../headers//usr/include/stdlib.h
bntseq.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./bntseq.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/zlib.h
../headers//usr/include/stdint.h
./kseq.h
../headers//usr/include/getopt.h
./utils.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/errno.h
../headers//usr/include/assert.h
bwa.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./kstring.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/zlib.h
../headers//usr/include/stdint.h
./bntseq.h
./bwt.h
./bwa.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
./ksw.h
./utils.h
../headers//usr/include/ctype.h
bwamem.c
./kstring.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./bntseq.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./utils.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/stdint.h
./bwt.h
./bwa.h
./bwamem.h
./ksw.h
./ksort.h
./kbtree.h
../headers//usr/include/stdlib.h
../headers//usr/include/assert.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
bwamem_pair.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
./utils.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/x86_64-linux-gnu/sys/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./kstring.h
../headers//usr/include/stdint.h
./bntseq.h
./bwa.h
./bwamem.h
./ksw.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
bwamem_extra.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
./bntseq.h
./kstring.h
../headers//usr/include/stdint.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./bwt.h
./bwa.h
./bwamem.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
../headers//usr/include/assert.h
kthread.c
../headers//usr/include/x86_64-linux-gnu/bits/pthreadtypes.h
../headers//usr/include/pthread.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libz.so.1
../libs/lib/x86_64-linux-gnu/libpthread.so.0
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/bwa.1.gz