bowtie2-examples - amd64

Documentation

Binaries

bowtie2-build-s

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bt2_build.cpp

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ccnt_lut.cpp

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ref_read.cpp

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alphabet.cpp

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edit.cpp

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bt2_idx.cpp

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bt2_io.cpp

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bt2_util.cpp

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reference.cpp

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ds.cpp

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multikey_qsort.cpp

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limit.cpp

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random_source.cpp

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tinythread.cpp

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diff_sample.cpp

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bowtie_build_main.cpp

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includes

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bt2_build.cpp

ccnt_lut.cpp

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ref_read.cpp

alphabet.cpp

shmem.cpp

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edit.cpp

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bt2_idx.cpp

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bt2_io.cpp

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bt2_util.cpp

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reference.cpp

ds.cpp

multikey_qsort.cpp

limit.cpp

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random_source.cpp

tinythread.cpp

diff_sample.cpp

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bowtie_build_main.cpp

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manual

bowtie2-align-l

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bt2_search.cpp

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ccnt_lut.cpp

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ref_read.cpp

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alphabet.cpp

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shmem.cpp

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edit.cpp

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bt2_idx.cpp

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bt2_io.cpp

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bt2_util.cpp

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reference.cpp

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ds.cpp

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multikey_qsort.cpp

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limit.cpp

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random_source.cpp

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tinythread.cpp

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qual.cpp

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pat.cpp

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read_qseq.cpp

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aligner_seed_policy.cpp

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aligner_seed.cpp

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aligner_sw.cpp

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aligner_sw_driver.cpp

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aligner_cache.cpp

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aligner_result.cpp

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ref_coord.cpp

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mask.cpp

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pe.cpp

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dp_framer.cpp

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scoring.cpp

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presets.cpp

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unique.cpp

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simple_func.cpp

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random_util.cpp

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aligner_bt.cpp

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sse_util.cpp

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aligner_swsse.cpp

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outq.cpp

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aligner_swsse_loc_i16.cpp

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aligner_swsse_ee_i16.cpp

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aligner_swsse_loc_u8.cpp

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aligner_swsse_ee_u8.cpp

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aligner_driver.cpp

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bowtie_main.cpp

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includes

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bt2_search.cpp

ccnt_lut.cpp

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ref_read.cpp

alphabet.cpp

shmem.cpp

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edit.cpp

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bt2_idx.cpp

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bt2_io.cpp

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bt2_util.cpp

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reference.cpp

ds.cpp

multikey_qsort.cpp

limit.cpp

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random_source.cpp

tinythread.cpp

qual.cpp

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pat.cpp

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sam.cpp

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read_qseq.cpp

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aligner_seed_policy.cpp

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aligner_seed.cpp

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aligner_seed2.cpp

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aligner_sw.cpp

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aligner_sw_driver.cpp

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aligner_cache.cpp

aligner_result.cpp

ref_coord.cpp

mask.cpp

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pe.cpp

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aln_sink.cpp

dp_framer.cpp

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scoring.cpp

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presets.cpp

unique.cpp

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simple_func.cpp

random_util.cpp

aligner_bt.cpp

sse_util.cpp

aligner_swsse.cpp

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outq.cpp

aligner_swsse_loc_i16.cpp

aligner_swsse_ee_i16.cpp

aligner_swsse_loc_u8.cpp

aligner_swsse_ee_u8.cpp

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aligner_driver.cpp

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bowtie_main.cpp

libraries

manual

bowtie2-inspect-l

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bt2_inspect.cpp

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ccnt_lut.cpp

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ref_read.cpp

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alphabet.cpp

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edit.cpp

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bt2_idx.cpp

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bt2_io.cpp

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bt2_util.cpp

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reference.cpp

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ds.cpp

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multikey_qsort.cpp

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limit.cpp

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random_source.cpp

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tinythread.cpp

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includes

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bt2_inspect.cpp

ccnt_lut.cpp

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ref_read.cpp

alphabet.cpp

shmem.cpp

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edit.cpp

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bt2_idx.cpp

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bt2_io.cpp

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bt2_util.cpp

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reference.cpp

ds.cpp

multikey_qsort.cpp

limit.cpp

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random_source.cpp

tinythread.cpp

libraries

manual

bowtie2-align-s

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bt2_search.cpp

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ccnt_lut.cpp

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ref_read.cpp

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alphabet.cpp

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edit.cpp

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bt2_idx.cpp

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bt2_io.cpp

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bt2_util.cpp

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reference.cpp

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ds.cpp

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multikey_qsort.cpp

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limit.cpp

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random_source.cpp

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tinythread.cpp

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qual.cpp

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pat.cpp

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read_qseq.cpp

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aligner_seed_policy.cpp

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aligner_seed.cpp

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aligner_sw.cpp

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aligner_sw_driver.cpp

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aligner_cache.cpp

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aligner_result.cpp

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ref_coord.cpp

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mask.cpp

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pe.cpp

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aln_sink.cpp

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dp_framer.cpp

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scoring.cpp

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presets.cpp

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unique.cpp

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simple_func.cpp

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random_util.cpp

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aligner_bt.cpp

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sse_util.cpp

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aligner_swsse.cpp

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outq.cpp

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aligner_swsse_loc_i16.cpp

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aligner_swsse_ee_i16.cpp

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aligner_swsse_loc_u8.cpp

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aligner_swsse_ee_u8.cpp

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aligner_driver.cpp

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bowtie_main.cpp

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includes

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bt2_search.cpp

ccnt_lut.cpp

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ref_read.cpp

alphabet.cpp

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edit.cpp

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bt2_idx.cpp

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bt2_io.cpp

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bt2_util.cpp

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reference.cpp

ds.cpp

multikey_qsort.cpp

limit.cpp

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random_source.cpp

tinythread.cpp

qual.cpp

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pat.cpp

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sam.cpp

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read_qseq.cpp

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aligner_seed_policy.cpp

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aligner_seed.cpp

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aligner_seed2.cpp

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aligner_sw.cpp

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aligner_sw_driver.cpp

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aligner_cache.cpp

aligner_result.cpp

ref_coord.cpp

mask.cpp

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pe.cpp

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aln_sink.cpp

dp_framer.cpp

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scoring.cpp

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presets.cpp

unique.cpp

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simple_func.cpp

random_util.cpp

aligner_bt.cpp

sse_util.cpp

aligner_swsse.cpp

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outq.cpp

aligner_swsse_loc_i16.cpp

aligner_swsse_ee_i16.cpp

aligner_swsse_loc_u8.cpp

aligner_swsse_ee_u8.cpp

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aligner_driver.cpp

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bowtie_main.cpp

libraries

manual

bowtie2-build-l

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bt2_build.cpp

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ccnt_lut.cpp

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ref_read.cpp

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alphabet.cpp

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shmem.cpp

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edit.cpp

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bt2_idx.cpp

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bt2_io.cpp

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bt2_util.cpp

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reference.cpp

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ds.cpp

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multikey_qsort.cpp

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limit.cpp

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random_source.cpp

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tinythread.cpp

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diff_sample.cpp

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bowtie_build_main.cpp

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includes

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bt2_build.cpp

ccnt_lut.cpp

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ref_read.cpp

alphabet.cpp

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edit.cpp

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bt2_idx.cpp

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bt2_io.cpp

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bt2_util.cpp

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reference.cpp

ds.cpp

multikey_qsort.cpp

limit.cpp

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random_source.cpp

tinythread.cpp

diff_sample.cpp

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bowtie_build_main.cpp

libraries

manual

bowtie2-inspect-s

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bt2_inspect.cpp

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ccnt_lut.cpp

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ref_read.cpp

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alphabet.cpp

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edit.cpp

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bt2_idx.cpp

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bt2_util.cpp

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reference.cpp

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multikey_qsort.cpp

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limit.cpp

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random_source.cpp

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tinythread.cpp

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includes

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bt2_inspect.cpp

ccnt_lut.cpp

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ref_read.cpp

alphabet.cpp

shmem.cpp

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edit.cpp

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bt2_idx.cpp

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bt2_io.cpp

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bt2_util.cpp

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reference.cpp

ds.cpp

multikey_qsort.cpp

limit.cpp

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random_source.cpp

tinythread.cpp

libraries

manual