bowtie2 - amd64

Documentation

Binaries

bowtie2-build-s

compile units

unassigned

bt2_build.cpp

Gimple

GKD

OBJ

ccnt_lut.cpp

Gimple

GKD

OBJ

unassigned

ref_read.cpp

Gimple

GKD

OBJ

alphabet.cpp

Gimple

GKD

OBJ

shmem.cpp

Gimple

GKD

OBJ

unassigned

edit.cpp

Gimple

GKD

OBJ

unassigned

bt2_idx.cpp

Gimple

GKD

OBJ

unassigned

bt2_io.cpp

Gimple

GKD

OBJ

unassigned

bt2_util.cpp

Gimple

GKD

OBJ

unassigned

reference.cpp

Gimple

GKD

OBJ

ds.cpp

Gimple

GKD

OBJ

multikey_qsort.cpp

Gimple

GKD

OBJ

limit.cpp

Gimple

GKD

OBJ

unassigned

random_source.cpp

Gimple

GKD

OBJ

tinythread.cpp

Gimple

GKD

OBJ

diff_sample.cpp

Gimple

GKD

OBJ

unassigned

bowtie_build_main.cpp

Gimple

GKD

OBJ

includes

unassigned

bt2_build.cpp

ccnt_lut.cpp

unassigned

ref_read.cpp

alphabet.cpp

shmem.cpp

unassigned

edit.cpp

unassigned

bt2_idx.cpp

unassigned

bt2_io.cpp

unassigned

bt2_util.cpp

unassigned

reference.cpp

ds.cpp

multikey_qsort.cpp

limit.cpp

unassigned

random_source.cpp

tinythread.cpp

diff_sample.cpp

unassigned

bowtie_build_main.cpp

libraries

manual

bowtie2-align-l

compile units

unassigned

bt2_search.cpp

Gimple

GKD

OBJ

ccnt_lut.cpp

Gimple

GKD

OBJ

unassigned

ref_read.cpp

Gimple

GKD

OBJ

alphabet.cpp

Gimple

GKD

OBJ

shmem.cpp

Gimple

GKD

OBJ

unassigned

edit.cpp

Gimple

GKD

OBJ

unassigned

bt2_idx.cpp

Gimple

GKD

OBJ

unassigned

bt2_io.cpp

Gimple

GKD

OBJ

unassigned

bt2_util.cpp

Gimple

GKD

OBJ

unassigned

reference.cpp

Gimple

GKD

OBJ

ds.cpp

Gimple

GKD

OBJ

multikey_qsort.cpp

Gimple

GKD

OBJ

limit.cpp

Gimple

GKD

OBJ

unassigned

random_source.cpp

Gimple

GKD

OBJ

tinythread.cpp

Gimple

GKD

OBJ

qual.cpp

Gimple

GKD

OBJ

unassigned

pat.cpp

Gimple

GKD

OBJ

unassigned

sam.cpp

Gimple

GKD

OBJ

unassigned

read_qseq.cpp

Gimple

GKD

OBJ

unassigned

aligner_seed_policy.cpp

Gimple

GKD

OBJ

unassigned

aligner_seed.cpp

Gimple

GKD

OBJ

unassigned

aligner_seed2.cpp

Gimple

GKD

OBJ

unassigned

aligner_sw.cpp

Gimple

GKD

OBJ

unassigned

aligner_sw_driver.cpp

Gimple

GKD

OBJ

unassigned

aligner_cache.cpp

Gimple

GKD

OBJ

aligner_result.cpp

Gimple

GKD

OBJ

ref_coord.cpp

Gimple

GKD

OBJ

mask.cpp

Gimple

GKD

OBJ

unassigned

pe.cpp

Gimple

GKD

OBJ

unassigned

aln_sink.cpp

Gimple

GKD

OBJ

dp_framer.cpp

Gimple

GKD

OBJ

unassigned

scoring.cpp

Gimple

GKD

OBJ

unassigned

presets.cpp

Gimple

GKD

OBJ

unique.cpp

Gimple

GKD

OBJ

unassigned

simple_func.cpp

Gimple

GKD

OBJ

random_util.cpp

Gimple

GKD

OBJ

aligner_bt.cpp

Gimple

GKD

OBJ

sse_util.cpp

Gimple

GKD

OBJ

aligner_swsse.cpp

Gimple

GKD

OBJ

unassigned

outq.cpp

Gimple

GKD

OBJ

aligner_swsse_loc_i16.cpp

Gimple

GKD

OBJ

aligner_swsse_ee_i16.cpp

Gimple

GKD

OBJ

aligner_swsse_loc_u8.cpp

Gimple

GKD

OBJ

aligner_swsse_ee_u8.cpp

Gimple

GKD

OBJ

unassigned

aligner_driver.cpp

Gimple

GKD

OBJ

unassigned

bowtie_main.cpp

Gimple

GKD

OBJ

includes

unassigned

bt2_search.cpp

ccnt_lut.cpp

unassigned

ref_read.cpp

alphabet.cpp

shmem.cpp

unassigned

edit.cpp

unassigned

bt2_idx.cpp

unassigned

bt2_io.cpp

unassigned

bt2_util.cpp

unassigned

reference.cpp

ds.cpp

multikey_qsort.cpp

limit.cpp

unassigned

random_source.cpp

tinythread.cpp

qual.cpp

unassigned

pat.cpp

unassigned

sam.cpp

unassigned

read_qseq.cpp

unassigned

aligner_seed_policy.cpp

unassigned

aligner_seed.cpp

unassigned

aligner_seed2.cpp

unassigned

aligner_sw.cpp

unassigned

aligner_sw_driver.cpp

unassigned

aligner_cache.cpp

aligner_result.cpp

ref_coord.cpp

mask.cpp

unassigned

pe.cpp

unassigned

aln_sink.cpp

dp_framer.cpp

unassigned

scoring.cpp

unassigned

presets.cpp

unique.cpp

unassigned

simple_func.cpp

random_util.cpp

aligner_bt.cpp

sse_util.cpp

aligner_swsse.cpp

unassigned

outq.cpp

aligner_swsse_loc_i16.cpp

aligner_swsse_ee_i16.cpp

aligner_swsse_loc_u8.cpp

aligner_swsse_ee_u8.cpp

unassigned

aligner_driver.cpp

unassigned

bowtie_main.cpp

libraries

manual

bowtie2-inspect-l

compile units

unassigned

bt2_inspect.cpp

Gimple

GKD

OBJ

ccnt_lut.cpp

Gimple

GKD

OBJ

unassigned

ref_read.cpp

Gimple

GKD

OBJ

alphabet.cpp

Gimple

GKD

OBJ

shmem.cpp

Gimple

GKD

OBJ

unassigned

edit.cpp

Gimple

GKD

OBJ

unassigned

bt2_idx.cpp

Gimple

GKD

OBJ

unassigned

bt2_io.cpp

Gimple

GKD

OBJ

unassigned

bt2_util.cpp

Gimple

GKD

OBJ

unassigned

reference.cpp

Gimple

GKD

OBJ

ds.cpp

Gimple

GKD

OBJ

multikey_qsort.cpp

Gimple

GKD

OBJ

limit.cpp

Gimple

GKD

OBJ

unassigned

random_source.cpp

Gimple

GKD

OBJ

tinythread.cpp

Gimple

GKD

OBJ

includes

unassigned

bt2_inspect.cpp

ccnt_lut.cpp

unassigned

ref_read.cpp

alphabet.cpp

shmem.cpp

unassigned

edit.cpp

unassigned

bt2_idx.cpp

unassigned

bt2_io.cpp

unassigned

bt2_util.cpp

unassigned

reference.cpp

ds.cpp

multikey_qsort.cpp

limit.cpp

unassigned

random_source.cpp

tinythread.cpp

libraries

manual

bowtie2-align-s

compile units

unassigned

bt2_search.cpp

Gimple

GKD

OBJ

ccnt_lut.cpp

Gimple

GKD

OBJ

unassigned

ref_read.cpp

Gimple

GKD

OBJ

alphabet.cpp

Gimple

GKD

OBJ

shmem.cpp

Gimple

GKD

OBJ

unassigned

edit.cpp

Gimple

GKD

OBJ

unassigned

bt2_idx.cpp

Gimple

GKD

OBJ

unassigned

bt2_io.cpp

Gimple

GKD

OBJ

unassigned

bt2_util.cpp

Gimple

GKD

OBJ

unassigned

reference.cpp

Gimple

GKD

OBJ

ds.cpp

Gimple

GKD

OBJ

multikey_qsort.cpp

Gimple

GKD

OBJ

limit.cpp

Gimple

GKD

OBJ

unassigned

random_source.cpp

Gimple

GKD

OBJ

tinythread.cpp

Gimple

GKD

OBJ

qual.cpp

Gimple

GKD

OBJ

unassigned

pat.cpp

Gimple

GKD

OBJ

unassigned

sam.cpp

Gimple

GKD

OBJ

unassigned

read_qseq.cpp

Gimple

GKD

OBJ

unassigned

aligner_seed_policy.cpp

Gimple

GKD

OBJ

unassigned

aligner_seed.cpp

Gimple

GKD

OBJ

unassigned

aligner_seed2.cpp

Gimple

GKD

OBJ

unassigned

aligner_sw.cpp

Gimple

GKD

OBJ

unassigned

aligner_sw_driver.cpp

Gimple

GKD

OBJ

unassigned

aligner_cache.cpp

Gimple

GKD

OBJ

aligner_result.cpp

Gimple

GKD

OBJ

ref_coord.cpp

Gimple

GKD

OBJ

mask.cpp

Gimple

GKD

OBJ

unassigned

pe.cpp

Gimple

GKD

OBJ

unassigned

aln_sink.cpp

Gimple

GKD

OBJ

dp_framer.cpp

Gimple

GKD

OBJ

unassigned

scoring.cpp

Gimple

GKD

OBJ

unassigned

presets.cpp

Gimple

GKD

OBJ

unique.cpp

Gimple

GKD

OBJ

unassigned

simple_func.cpp

Gimple

GKD

OBJ

random_util.cpp

Gimple

GKD

OBJ

aligner_bt.cpp

Gimple

GKD

OBJ

sse_util.cpp

Gimple

GKD

OBJ

aligner_swsse.cpp

Gimple

GKD

OBJ

unassigned

outq.cpp

Gimple

GKD

OBJ

aligner_swsse_loc_i16.cpp

Gimple

GKD

OBJ

aligner_swsse_ee_i16.cpp

Gimple

GKD

OBJ

aligner_swsse_loc_u8.cpp

Gimple

GKD

OBJ

aligner_swsse_ee_u8.cpp

Gimple

GKD

OBJ

unassigned

aligner_driver.cpp

Gimple

GKD

OBJ

unassigned

bowtie_main.cpp

Gimple

GKD

OBJ

includes

unassigned

bt2_search.cpp

ccnt_lut.cpp

unassigned

ref_read.cpp

alphabet.cpp

shmem.cpp

unassigned

edit.cpp

unassigned

bt2_idx.cpp

unassigned

bt2_io.cpp

unassigned

bt2_util.cpp

unassigned

reference.cpp

ds.cpp

multikey_qsort.cpp

limit.cpp

unassigned

random_source.cpp

tinythread.cpp

qual.cpp

unassigned

pat.cpp

unassigned

sam.cpp

unassigned

read_qseq.cpp

unassigned

aligner_seed_policy.cpp

unassigned

aligner_seed.cpp

unassigned

aligner_seed2.cpp

unassigned

aligner_sw.cpp

unassigned

aligner_sw_driver.cpp

unassigned

aligner_cache.cpp

aligner_result.cpp

ref_coord.cpp

mask.cpp

unassigned

pe.cpp

unassigned

aln_sink.cpp

dp_framer.cpp

unassigned

scoring.cpp

unassigned

presets.cpp

unique.cpp

unassigned

simple_func.cpp

random_util.cpp

aligner_bt.cpp

sse_util.cpp

aligner_swsse.cpp

unassigned

outq.cpp

aligner_swsse_loc_i16.cpp

aligner_swsse_ee_i16.cpp

aligner_swsse_loc_u8.cpp

aligner_swsse_ee_u8.cpp

unassigned

aligner_driver.cpp

unassigned

bowtie_main.cpp

libraries

manual

bowtie2-build-l

compile units

unassigned

bt2_build.cpp

Gimple

GKD

OBJ

ccnt_lut.cpp

Gimple

GKD

OBJ

unassigned

ref_read.cpp

Gimple

GKD

OBJ

alphabet.cpp

Gimple

GKD

OBJ

shmem.cpp

Gimple

GKD

OBJ

unassigned

edit.cpp

Gimple

GKD

OBJ

unassigned

bt2_idx.cpp

Gimple

GKD

OBJ

unassigned

bt2_io.cpp

Gimple

GKD

OBJ

unassigned

bt2_util.cpp

Gimple

GKD

OBJ

unassigned

reference.cpp

Gimple

GKD

OBJ

ds.cpp

Gimple

GKD

OBJ

multikey_qsort.cpp

Gimple

GKD

OBJ

limit.cpp

Gimple

GKD

OBJ

unassigned

random_source.cpp

Gimple

GKD

OBJ

tinythread.cpp

Gimple

GKD

OBJ

diff_sample.cpp

Gimple

GKD

OBJ

unassigned

bowtie_build_main.cpp

Gimple

GKD

OBJ

includes

unassigned

bt2_build.cpp

ccnt_lut.cpp

unassigned

ref_read.cpp

alphabet.cpp

shmem.cpp

unassigned

edit.cpp

unassigned

bt2_idx.cpp

unassigned

bt2_io.cpp

unassigned

bt2_util.cpp

unassigned

reference.cpp

ds.cpp

multikey_qsort.cpp

limit.cpp

unassigned

random_source.cpp

tinythread.cpp

diff_sample.cpp

unassigned

bowtie_build_main.cpp

libraries

manual

bowtie2-inspect-s

compile units

unassigned

bt2_inspect.cpp

Gimple

GKD

OBJ

ccnt_lut.cpp

Gimple

GKD

OBJ

unassigned

ref_read.cpp

Gimple

GKD

OBJ

alphabet.cpp

Gimple

GKD

OBJ

shmem.cpp

Gimple

GKD

OBJ

unassigned

edit.cpp

Gimple

GKD

OBJ

unassigned

bt2_idx.cpp

Gimple

GKD

OBJ

unassigned

bt2_io.cpp

Gimple

GKD

OBJ

unassigned

bt2_util.cpp

Gimple

GKD

OBJ

unassigned

reference.cpp

Gimple

GKD

OBJ

ds.cpp

Gimple

GKD

OBJ

multikey_qsort.cpp

Gimple

GKD

OBJ

limit.cpp

Gimple

GKD

OBJ

unassigned

random_source.cpp

Gimple

GKD

OBJ

tinythread.cpp

Gimple

GKD

OBJ

includes

unassigned

bt2_inspect.cpp

ccnt_lut.cpp

unassigned

ref_read.cpp

alphabet.cpp

shmem.cpp

unassigned

edit.cpp

unassigned

bt2_idx.cpp

unassigned

bt2_io.cpp

unassigned

bt2_util.cpp

unassigned

reference.cpp

ds.cpp

multikey_qsort.cpp

limit.cpp

unassigned

random_source.cpp

tinythread.cpp

libraries

manual