biosquid-dev - amd64
Documentation
./doc/copyright
./doc/README.Debian
./doc/examples/Formats/fasta
./doc/examples/Formats/swissprot.gz
./doc/examples/Formats/genbank.gz
./doc/examples/Formats/gcg.gz
./doc/examples/Formats/selex.2
./doc/examples/Formats/stockholm.2.gz
./doc/examples/Formats/embl.gz
./doc/examples/Formats/formattest.pl
./doc/examples/Formats/clustal
./doc/examples/Formats/stockholm.1
./doc/examples/Formats/gcgdata.1.gz
./doc/examples/Formats/msf.gz
./doc/examples/Formats/gcgdata.2
./doc/examples/Formats/a2m.gz
./doc/examples/Formats/pir.gz
./doc/examples/Formats/selex.1
./doc/examples/Formats/regression.dat
./doc/examples/Formats/phylip.gz
./doc/examples/Testsuite/rndspeed_main.c.004t.gimple
./doc/examples/Testsuite/exercises.sqc
./doc/examples/Testsuite/Makefile.in
./doc/examples/Testsuite/testsuite.pm
./doc/examples/Testsuite/sqdconfig_main.o.gkd
./doc/examples/Testsuite/translate-test.pl
./doc/examples/Testsuite/rndspeed_main.o.gkd.gz
./doc/examples/Testsuite/sqdconfig_main.c.004t.gimple
./doc/examples/Testsuite/x-base-sindex
./doc/examples/Testsuite/x-base-sreformat
./doc/examples/Testsuite/iospeed_main.c.004t.gimple
./doc/examples/Testsuite/x-base-shuffle
./doc/examples/Testsuite/iospeed_main.c
./doc/examples/Testsuite/bug-1-sfetch-paths
./doc/examples/Testsuite/x-base-alistat
./doc/examples/Testsuite/Makefile
./doc/examples/Testsuite/rndspeed_main.c
./doc/examples/Testsuite/sqdconfig_main.c
./doc/examples/Testsuite/x-base-seqstat
./doc/examples/Testsuite/x-base-afetch
./doc/examples/Testsuite/iospeed_main.o.gkd.gz
./doc/examples/Testsuite/00README
./doc/examples/Testsuite/x-base-sfetch
./doc/changelog.Debian.gz
Binaries
alistat
compile units
aligneval.c
Gimple
./aligneval.c.004t.gimple
GKD
./aligneval.o.gkd
OBJ
obj: ./aligneval.o
cluster.c
Gimple
./cluster.c.004t.gimple
GKD
./cluster.o.gkd
OBJ
obj: ./cluster.o
sre_math.c
Gimple
./sre_math.c.004t.gimple
GKD
./sre_math.o.gkd
OBJ
obj: ./sre_math.o
sre_stack.c
Gimple
./sre_stack.c.004t.gimple
GKD
./sre_stack.o.gkd
OBJ
obj: ./sre_stack.o
alistat_main.c
Gimple
./alistat_main.c.004t.gimple
GKD
./alistat_main.o.gkd
OBJ
obj: ./alistat_main.o
a2m.c
Gimple
./a2m.c.004t.gimple
GKD
./a2m.o.gkd
OBJ
obj: ./a2m.o
alignio.c
Gimple
./alignio.c.004t.gimple
GKD
./alignio.o.gkd
OBJ
obj: ./alignio.o
clustal.c
Gimple
./clustal.c.004t.gimple
GKD
./clustal.o.gkd
OBJ
obj: ./clustal.o
file.c
Gimple
./file.c.004t.gimple
GKD
./file.o.gkd
OBJ
obj: ./file.o
getopt.c
Gimple
./getopt.c.004t.gimple
GKD
./getopt.o.gkd
OBJ
obj: ./getopt.o
gki.c
Gimple
./gki.c.004t.gimple
GKD
./gki.o.gkd
OBJ
obj: ./gki.o
hsregex.c
Gimple
./hsregex.c.004t.gimple
GKD
./hsregex.o.gkd
OBJ
obj: ./hsregex.o
msa.c
Gimple
./msa.c.004t.gimple
GKD
./msa.o.gkd
OBJ
obj: ./msa.o
msf.c
Gimple
./msf.c.004t.gimple
GKD
./msf.o.gkd
OBJ
obj: ./msf.o
phylip.c
Gimple
./phylip.c.004t.gimple
GKD
./phylip.o.gkd
OBJ
obj: ./phylip.o
selex.c
Gimple
./selex.c.004t.gimple
GKD
./selex.o.gkd
OBJ
obj: ./selex.o
sqerror.c
Gimple
./sqerror.c.004t.gimple
GKD
./sqerror.o.gkd
OBJ
obj: ./sqerror.o
sqio.c
Gimple
./sqio.c.004t.gimple
GKD
./sqio.o.gkd
OBJ
obj: ./sqio.o
squidcore.c
Gimple
./squidcore.c.004t.gimple
GKD
./squidcore.o.gkd
OBJ
obj: ./squidcore.o
sre_ctype.c
Gimple
./sre_ctype.c.004t.gimple
GKD
./sre_ctype.o.gkd
OBJ
obj: ./sre_ctype.o
sre_random.c
Gimple
./sre_random.c.004t.gimple
GKD
./sre_random.o.gkd
OBJ
obj: ./sre_random.o
sre_string.c
Gimple
./sre_string.c.004t.gimple
GKD
./sre_string.o.gkd
OBJ
obj: ./sre_string.o
ssi.c
Gimple
./ssi.c.004t.gimple
GKD
./ssi.o.gkd
OBJ
obj: ./ssi.o
stockholm.c
Gimple
./stockholm.c.004t.gimple
GKD
./stockholm.o.gkd
OBJ
obj: ./stockholm.o
types.c
Gimple
./types.c.004t.gimple
GKD
./types.o.gkd
OBJ
obj: ./types.o
vectorops.c
Gimple
./vectorops.c.004t.gimple
GKD
./vectorops.o.gkd
OBJ
obj: ./vectorops.o
includes
aligneval.c
../headers//usr/include/ctype.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
./sqfuncs.h
./sre_random.h
../headers//usr/include/stdlib.h
cluster.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./msa.h
./sre_stack.h
../headers//usr/include/stdlib.h
./sqfuncs.h
sre_math.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
./sqfuncs.h
../headers//usr/include/stdlib.h
sre_stack.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./sre_stack.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
alistat_main.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
a2m.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
alignio.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./msa.h
./sqfuncs.h
./vectorops.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sre_random.h
clustal.c
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
file.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/stdlib.h
getopt.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
./sqfuncs.h
gki.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./gki.h
../headers//usr/include/stdio.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
hsregex.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
msa.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./vectorops.h
msf.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
phylip.c
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/ctype.h
selex.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/stdlib.h
./sqfuncs.h
../headers//usr/include/string.h
./vectorops.h
sqerror.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdlib.h
sqio.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
squidcore.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
sre_ctype.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
sre_random.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
sre_string.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
./sqfuncs.h
./sre_random.h
../headers//usr/include/ctype.h
ssi.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
./squid.h
./ssi.h
./sqfuncs.h
../headers//usr/include/string.h
stockholm.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
types.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
vectorops.c
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/alistat.1.gz
sqdconfig
compile units
sqdconfig_main.c
Gimple
./sqdconfig_main.c.004t.gimple
GKD
./sqdconfig_main.o.gkd
OBJ
obj: ./sqdconfig_main.o
includes
sqdconfig_main.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
sfetch
compile units
revcomp.c
Gimple
./revcomp.c.004t.gimple
GKD
./revcomp.o.gkd
OBJ
obj: ./revcomp.o
shuffle.c
Gimple
./shuffle.c.004t.gimple
GKD
./shuffle.o.gkd
OBJ
obj: ./shuffle.o
sfetch_main.c
Gimple
./sfetch_main.c.004t.gimple
GKD
./sfetch_main.o.gkd
OBJ
obj: ./sfetch_main.o
a2m.c
Gimple
./a2m.c.004t.gimple
GKD
./a2m.o.gkd
OBJ
obj: ./a2m.o
alignio.c
Gimple
./alignio.c.004t.gimple
GKD
./alignio.o.gkd
OBJ
obj: ./alignio.o
clustal.c
Gimple
./clustal.c.004t.gimple
GKD
./clustal.o.gkd
OBJ
obj: ./clustal.o
file.c
Gimple
./file.c.004t.gimple
GKD
./file.o.gkd
OBJ
obj: ./file.o
getopt.c
Gimple
./getopt.c.004t.gimple
GKD
./getopt.o.gkd
OBJ
obj: ./getopt.o
gki.c
Gimple
./gki.c.004t.gimple
GKD
./gki.o.gkd
OBJ
obj: ./gki.o
hsregex.c
Gimple
./hsregex.c.004t.gimple
GKD
./hsregex.o.gkd
OBJ
obj: ./hsregex.o
msa.c
Gimple
./msa.c.004t.gimple
GKD
./msa.o.gkd
OBJ
obj: ./msa.o
msf.c
Gimple
./msf.c.004t.gimple
GKD
./msf.o.gkd
OBJ
obj: ./msf.o
phylip.c
Gimple
./phylip.c.004t.gimple
GKD
./phylip.o.gkd
OBJ
obj: ./phylip.o
selex.c
Gimple
./selex.c.004t.gimple
GKD
./selex.o.gkd
OBJ
obj: ./selex.o
sqerror.c
Gimple
./sqerror.c.004t.gimple
GKD
./sqerror.o.gkd
OBJ
obj: ./sqerror.o
sqio.c
Gimple
./sqio.c.004t.gimple
GKD
./sqio.o.gkd
OBJ
obj: ./sqio.o
squidcore.c
Gimple
./squidcore.c.004t.gimple
GKD
./squidcore.o.gkd
OBJ
obj: ./squidcore.o
sre_ctype.c
Gimple
./sre_ctype.c.004t.gimple
GKD
./sre_ctype.o.gkd
OBJ
obj: ./sre_ctype.o
sre_random.c
Gimple
./sre_random.c.004t.gimple
GKD
./sre_random.o.gkd
OBJ
obj: ./sre_random.o
sre_string.c
Gimple
./sre_string.c.004t.gimple
GKD
./sre_string.o.gkd
OBJ
obj: ./sre_string.o
ssi.c
Gimple
./ssi.c.004t.gimple
GKD
./ssi.o.gkd
OBJ
obj: ./ssi.o
stockholm.c
Gimple
./stockholm.c.004t.gimple
GKD
./stockholm.o.gkd
OBJ
obj: ./stockholm.o
types.c
Gimple
./types.c.004t.gimple
GKD
./types.o.gkd
OBJ
obj: ./types.o
vectorops.c
Gimple
./vectorops.c.004t.gimple
GKD
./vectorops.o.gkd
OBJ
obj: ./vectorops.o
includes
revcomp.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
./sqfuncs.h
../headers//usr/include/ctype.h
shuffle.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/ctype.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
./sre_random.h
./sqfuncs.h
../headers//usr/include/stdlib.h
./vectorops.h
sfetch_main.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
a2m.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
alignio.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./msa.h
./sqfuncs.h
./vectorops.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sre_random.h
clustal.c
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
file.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/stdlib.h
getopt.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
./sqfuncs.h
gki.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./gki.h
../headers//usr/include/stdio.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
hsregex.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
msa.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./vectorops.h
msf.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
phylip.c
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/ctype.h
selex.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/stdlib.h
./sqfuncs.h
../headers//usr/include/string.h
./vectorops.h
sqerror.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdlib.h
sqio.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
squidcore.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
sre_ctype.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
sre_random.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
sre_string.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
./sqfuncs.h
./sre_random.h
../headers//usr/include/ctype.h
ssi.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
./squid.h
./ssi.h
./sqfuncs.h
../headers//usr/include/string.h
stockholm.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
types.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
vectorops.c
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/sfetch.1.gz
stranslate
compile units
unassigned
iupac.c
Gimple
./iupac.c.004t.gimple
GKD
./iupac.o.gkd
OBJ
obj: ./iupac.o
revcomp.c
Gimple
./revcomp.c.004t.gimple
GKD
./revcomp.o.gkd
OBJ
obj: ./revcomp.o
shuffle.c
Gimple
./shuffle.c.004t.gimple
GKD
./shuffle.o.gkd
OBJ
obj: ./shuffle.o
sre_stack.c
Gimple
./sre_stack.c.004t.gimple
GKD
./sre_stack.o.gkd
OBJ
obj: ./sre_stack.o
translate.c
Gimple
./translate.c.004t.gimple
GKD
./translate.o.gkd
OBJ
obj: ./translate.o
translate_main.c
Gimple
./translate_main.c.004t.gimple
GKD
./translate_main.o.gkd
OBJ
obj: ./translate_main.o
a2m.c
Gimple
./a2m.c.004t.gimple
GKD
./a2m.o.gkd
OBJ
obj: ./a2m.o
alignio.c
Gimple
./alignio.c.004t.gimple
GKD
./alignio.o.gkd
OBJ
obj: ./alignio.o
clustal.c
Gimple
./clustal.c.004t.gimple
GKD
./clustal.o.gkd
OBJ
obj: ./clustal.o
file.c
Gimple
./file.c.004t.gimple
GKD
./file.o.gkd
OBJ
obj: ./file.o
getopt.c
Gimple
./getopt.c.004t.gimple
GKD
./getopt.o.gkd
OBJ
obj: ./getopt.o
gki.c
Gimple
./gki.c.004t.gimple
GKD
./gki.o.gkd
OBJ
obj: ./gki.o
hsregex.c
Gimple
./hsregex.c.004t.gimple
GKD
./hsregex.o.gkd
OBJ
obj: ./hsregex.o
msa.c
Gimple
./msa.c.004t.gimple
GKD
./msa.o.gkd
OBJ
obj: ./msa.o
msf.c
Gimple
./msf.c.004t.gimple
GKD
./msf.o.gkd
OBJ
obj: ./msf.o
phylip.c
Gimple
./phylip.c.004t.gimple
GKD
./phylip.o.gkd
OBJ
obj: ./phylip.o
selex.c
Gimple
./selex.c.004t.gimple
GKD
./selex.o.gkd
OBJ
obj: ./selex.o
sqerror.c
Gimple
./sqerror.c.004t.gimple
GKD
./sqerror.o.gkd
OBJ
obj: ./sqerror.o
sqio.c
Gimple
./sqio.c.004t.gimple
GKD
./sqio.o.gkd
OBJ
obj: ./sqio.o
squidcore.c
Gimple
./squidcore.c.004t.gimple
GKD
./squidcore.o.gkd
OBJ
obj: ./squidcore.o
sre_ctype.c
Gimple
./sre_ctype.c.004t.gimple
GKD
./sre_ctype.o.gkd
OBJ
obj: ./sre_ctype.o
sre_random.c
Gimple
./sre_random.c.004t.gimple
GKD
./sre_random.o.gkd
OBJ
obj: ./sre_random.o
sre_string.c
Gimple
./sre_string.c.004t.gimple
GKD
./sre_string.o.gkd
OBJ
obj: ./sre_string.o
ssi.c
Gimple
./ssi.c.004t.gimple
GKD
./ssi.o.gkd
OBJ
obj: ./ssi.o
stockholm.c
Gimple
./stockholm.c.004t.gimple
GKD
./stockholm.o.gkd
OBJ
obj: ./stockholm.o
types.c
Gimple
./types.c.004t.gimple
GKD
./types.o.gkd
OBJ
obj: ./types.o
vectorops.c
Gimple
./vectorops.c.004t.gimple
GKD
./vectorops.o.gkd
OBJ
obj: ./vectorops.o
includes
unassigned
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
iupac.c
revcomp.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
./sqfuncs.h
../headers//usr/include/ctype.h
shuffle.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/ctype.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
./sre_random.h
./sqfuncs.h
../headers//usr/include/stdlib.h
./vectorops.h
sre_stack.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./sre_stack.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
translate.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
./squid.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
./sqfuncs.h
translate_main.c
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
a2m.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
alignio.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./msa.h
./sqfuncs.h
./vectorops.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sre_random.h
clustal.c
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
file.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/stdlib.h
getopt.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
./sqfuncs.h
gki.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./gki.h
../headers//usr/include/stdio.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
hsregex.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
msa.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./vectorops.h
msf.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
phylip.c
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/ctype.h
selex.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/stdlib.h
./sqfuncs.h
../headers//usr/include/string.h
./vectorops.h
sqerror.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdlib.h
sqio.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
squidcore.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
sre_ctype.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
sre_random.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
sre_string.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
./sqfuncs.h
./sre_random.h
../headers//usr/include/ctype.h
ssi.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
./squid.h
./ssi.h
./sqfuncs.h
../headers//usr/include/string.h
stockholm.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
types.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
vectorops.c
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/stranslate.1.gz
compalign
compile units
aligneval.c
Gimple
./aligneval.c.004t.gimple
GKD
./aligneval.o.gkd
OBJ
obj: ./aligneval.o
compalign_main.c
Gimple
./compalign_main.c.004t.gimple
GKD
./compalign_main.o.gkd
OBJ
obj: ./compalign_main.o
a2m.c
Gimple
./a2m.c.004t.gimple
GKD
./a2m.o.gkd
OBJ
obj: ./a2m.o
alignio.c
Gimple
./alignio.c.004t.gimple
GKD
./alignio.o.gkd
OBJ
obj: ./alignio.o
clustal.c
Gimple
./clustal.c.004t.gimple
GKD
./clustal.o.gkd
OBJ
obj: ./clustal.o
file.c
Gimple
./file.c.004t.gimple
GKD
./file.o.gkd
OBJ
obj: ./file.o
getopt.c
Gimple
./getopt.c.004t.gimple
GKD
./getopt.o.gkd
OBJ
obj: ./getopt.o
gki.c
Gimple
./gki.c.004t.gimple
GKD
./gki.o.gkd
OBJ
obj: ./gki.o
hsregex.c
Gimple
./hsregex.c.004t.gimple
GKD
./hsregex.o.gkd
OBJ
obj: ./hsregex.o
msa.c
Gimple
./msa.c.004t.gimple
GKD
./msa.o.gkd
OBJ
obj: ./msa.o
msf.c
Gimple
./msf.c.004t.gimple
GKD
./msf.o.gkd
OBJ
obj: ./msf.o
phylip.c
Gimple
./phylip.c.004t.gimple
GKD
./phylip.o.gkd
OBJ
obj: ./phylip.o
selex.c
Gimple
./selex.c.004t.gimple
GKD
./selex.o.gkd
OBJ
obj: ./selex.o
sqerror.c
Gimple
./sqerror.c.004t.gimple
GKD
./sqerror.o.gkd
OBJ
obj: ./sqerror.o
sqio.c
Gimple
./sqio.c.004t.gimple
GKD
./sqio.o.gkd
OBJ
obj: ./sqio.o
squidcore.c
Gimple
./squidcore.c.004t.gimple
GKD
./squidcore.o.gkd
OBJ
obj: ./squidcore.o
sre_ctype.c
Gimple
./sre_ctype.c.004t.gimple
GKD
./sre_ctype.o.gkd
OBJ
obj: ./sre_ctype.o
sre_random.c
Gimple
./sre_random.c.004t.gimple
GKD
./sre_random.o.gkd
OBJ
obj: ./sre_random.o
sre_string.c
Gimple
./sre_string.c.004t.gimple
GKD
./sre_string.o.gkd
OBJ
obj: ./sre_string.o
ssi.c
Gimple
./ssi.c.004t.gimple
GKD
./ssi.o.gkd
OBJ
obj: ./ssi.o
stockholm.c
Gimple
./stockholm.c.004t.gimple
GKD
./stockholm.o.gkd
OBJ
obj: ./stockholm.o
types.c
Gimple
./types.c.004t.gimple
GKD
./types.o.gkd
OBJ
obj: ./types.o
vectorops.c
Gimple
./vectorops.c.004t.gimple
GKD
./vectorops.o.gkd
OBJ
obj: ./vectorops.o
includes
aligneval.c
../headers//usr/include/ctype.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
./sqfuncs.h
./sre_random.h
../headers//usr/include/stdlib.h
compalign_main.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
a2m.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
alignio.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./msa.h
./sqfuncs.h
./vectorops.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sre_random.h
clustal.c
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
file.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/stdlib.h
getopt.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
./sqfuncs.h
gki.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./gki.h
../headers//usr/include/stdio.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
hsregex.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
msa.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./vectorops.h
msf.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
phylip.c
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/ctype.h
selex.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/stdlib.h
./sqfuncs.h
../headers//usr/include/string.h
./vectorops.h
sqerror.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdlib.h
sqio.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
squidcore.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
sre_ctype.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
sre_random.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
sre_string.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
./sqfuncs.h
./sre_random.h
../headers//usr/include/ctype.h
ssi.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
./squid.h
./ssi.h
./sqfuncs.h
../headers//usr/include/string.h
stockholm.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
types.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
vectorops.c
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/compalign.1.gz
seqstat
compile units
seqstat_main.c
Gimple
./seqstat_main.c.004t.gimple
GKD
./seqstat_main.o.gkd
OBJ
obj: ./seqstat_main.o
a2m.c
Gimple
./a2m.c.004t.gimple
GKD
./a2m.o.gkd
OBJ
obj: ./a2m.o
alignio.c
Gimple
./alignio.c.004t.gimple
GKD
./alignio.o.gkd
OBJ
obj: ./alignio.o
clustal.c
Gimple
./clustal.c.004t.gimple
GKD
./clustal.o.gkd
OBJ
obj: ./clustal.o
file.c
Gimple
./file.c.004t.gimple
GKD
./file.o.gkd
OBJ
obj: ./file.o
getopt.c
Gimple
./getopt.c.004t.gimple
GKD
./getopt.o.gkd
OBJ
obj: ./getopt.o
gki.c
Gimple
./gki.c.004t.gimple
GKD
./gki.o.gkd
OBJ
obj: ./gki.o
hsregex.c
Gimple
./hsregex.c.004t.gimple
GKD
./hsregex.o.gkd
OBJ
obj: ./hsregex.o
msa.c
Gimple
./msa.c.004t.gimple
GKD
./msa.o.gkd
OBJ
obj: ./msa.o
msf.c
Gimple
./msf.c.004t.gimple
GKD
./msf.o.gkd
OBJ
obj: ./msf.o
phylip.c
Gimple
./phylip.c.004t.gimple
GKD
./phylip.o.gkd
OBJ
obj: ./phylip.o
selex.c
Gimple
./selex.c.004t.gimple
GKD
./selex.o.gkd
OBJ
obj: ./selex.o
sqerror.c
Gimple
./sqerror.c.004t.gimple
GKD
./sqerror.o.gkd
OBJ
obj: ./sqerror.o
sqio.c
Gimple
./sqio.c.004t.gimple
GKD
./sqio.o.gkd
OBJ
obj: ./sqio.o
squidcore.c
Gimple
./squidcore.c.004t.gimple
GKD
./squidcore.o.gkd
OBJ
obj: ./squidcore.o
sre_ctype.c
Gimple
./sre_ctype.c.004t.gimple
GKD
./sre_ctype.o.gkd
OBJ
obj: ./sre_ctype.o
sre_random.c
Gimple
./sre_random.c.004t.gimple
GKD
./sre_random.o.gkd
OBJ
obj: ./sre_random.o
sre_string.c
Gimple
./sre_string.c.004t.gimple
GKD
./sre_string.o.gkd
OBJ
obj: ./sre_string.o
ssi.c
Gimple
./ssi.c.004t.gimple
GKD
./ssi.o.gkd
OBJ
obj: ./ssi.o
stockholm.c
Gimple
./stockholm.c.004t.gimple
GKD
./stockholm.o.gkd
OBJ
obj: ./stockholm.o
types.c
Gimple
./types.c.004t.gimple
GKD
./types.o.gkd
OBJ
obj: ./types.o
vectorops.c
Gimple
./vectorops.c.004t.gimple
GKD
./vectorops.o.gkd
OBJ
obj: ./vectorops.o
includes
seqstat_main.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/ctype.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
a2m.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
alignio.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./msa.h
./sqfuncs.h
./vectorops.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sre_random.h
clustal.c
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
file.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/stdlib.h
getopt.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
./sqfuncs.h
gki.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./gki.h
../headers//usr/include/stdio.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
hsregex.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
msa.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./vectorops.h
msf.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
phylip.c
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/ctype.h
selex.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/stdlib.h
./sqfuncs.h
../headers//usr/include/string.h
./vectorops.h
sqerror.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdlib.h
sqio.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
squidcore.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
sre_ctype.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
sre_random.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
sre_string.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
./sqfuncs.h
./sre_random.h
../headers//usr/include/ctype.h
ssi.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
./squid.h
./ssi.h
./sqfuncs.h
../headers//usr/include/string.h
stockholm.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
types.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
vectorops.c
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/seqstat.1.gz
iospeed
compile units
iospeed_main.c
Gimple
./iospeed_main.c.004t.gimple
GKD
./iospeed_main.o.gkd
OBJ
obj: ./iospeed_main.o
sqerror.c
Gimple
./sqerror.c.004t.gimple
GKD
./sqerror.o.gkd
OBJ
obj: ./sqerror.o
sqio.c
Gimple
./sqio.c.004t.gimple
GKD
./sqio.o.gkd
OBJ
obj: ./sqio.o
sre_ctype.c
Gimple
./sre_ctype.c.004t.gimple
GKD
./sre_ctype.o.gkd
OBJ
obj: ./sre_ctype.o
sre_string.c
Gimple
./sre_string.c.004t.gimple
GKD
./sre_string.o.gkd
OBJ
obj: ./sre_string.o
ssi.c
Gimple
./ssi.c.004t.gimple
GKD
./ssi.o.gkd
OBJ
obj: ./ssi.o
types.c
Gimple
./types.c.004t.gimple
GKD
./types.o.gkd
OBJ
obj: ./types.o
unassigned
iupac.c
Gimple
./iupac.c.004t.gimple
GKD
./iupac.o.gkd
OBJ
obj: ./iupac.o
stopwatch.c
Gimple
./stopwatch.c.004t.gimple
GKD
./stopwatch.o.gkd
OBJ
obj: ./stopwatch.o
alignio.c
Gimple
./alignio.c.004t.gimple
GKD
./alignio.o.gkd
OBJ
obj: ./alignio.o
file.c
Gimple
./file.c.004t.gimple
GKD
./file.o.gkd
OBJ
obj: ./file.o
hsregex.c
Gimple
./hsregex.c.004t.gimple
GKD
./hsregex.o.gkd
OBJ
obj: ./hsregex.o
msa.c
Gimple
./msa.c.004t.gimple
GKD
./msa.o.gkd
OBJ
obj: ./msa.o
msf.c
Gimple
./msf.c.004t.gimple
GKD
./msf.o.gkd
OBJ
obj: ./msf.o
phylip.c
Gimple
./phylip.c.004t.gimple
GKD
./phylip.o.gkd
OBJ
obj: ./phylip.o
selex.c
Gimple
./selex.c.004t.gimple
GKD
./selex.o.gkd
OBJ
obj: ./selex.o
sre_random.c
Gimple
./sre_random.c.004t.gimple
GKD
./sre_random.o.gkd
OBJ
obj: ./sre_random.o
stockholm.c
Gimple
./stockholm.c.004t.gimple
GKD
./stockholm.o.gkd
OBJ
obj: ./stockholm.o
vectorops.c
Gimple
./vectorops.c.004t.gimple
GKD
./vectorops.o.gkd
OBJ
obj: ./vectorops.o
a2m.c
Gimple
./a2m.c.004t.gimple
GKD
./a2m.o.gkd
OBJ
obj: ./a2m.o
clustal.c
Gimple
./clustal.c.004t.gimple
GKD
./clustal.o.gkd
OBJ
obj: ./clustal.o
gki.c
Gimple
./gki.c.004t.gimple
GKD
./gki.o.gkd
OBJ
obj: ./gki.o
includes
iospeed_main.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers/../squid.h
../headers/../gki.h
../headers/../ssi.h
../headers/../msa.h
../headers//usr/include/x86_64-linux-gnu/sys/times.h
../headers/../stopwatch.h
../headers/../sqfuncs.h
../headers//usr/include/stdlib.h
sqerror.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdlib.h
sqio.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
sre_ctype.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
sre_string.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
./sqfuncs.h
./sre_random.h
../headers//usr/include/ctype.h
ssi.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
./squid.h
./ssi.h
./sqfuncs.h
../headers//usr/include/string.h
types.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
unassigned
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
iupac.c
stopwatch.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/sys/times.h
./stopwatch.h
../headers//usr/include/unistd.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/confname.h
alignio.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./msa.h
./sqfuncs.h
./vectorops.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sre_random.h
file.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/stdlib.h
hsregex.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
msa.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./vectorops.h
msf.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
phylip.c
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/ctype.h
selex.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/stdlib.h
./sqfuncs.h
../headers//usr/include/string.h
./vectorops.h
sre_random.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
stockholm.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
vectorops.c
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
a2m.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
clustal.c
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
gki.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./gki.h
../headers//usr/include/stdio.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
compstruct
compile units
sre_math.c
Gimple
./sre_math.c.004t.gimple
GKD
./sre_math.o.gkd
OBJ
obj: ./sre_math.o
sre_stack.c
Gimple
./sre_stack.c.004t.gimple
GKD
./sre_stack.o.gkd
OBJ
obj: ./sre_stack.o
wuss.c
Gimple
./wuss.c.004t.gimple
GKD
./wuss.o.gkd
OBJ
obj: ./wuss.o
compstruct_main.c
Gimple
./compstruct_main.c.004t.gimple
GKD
./compstruct_main.o.gkd
OBJ
obj: ./compstruct_main.o
a2m.c
Gimple
./a2m.c.004t.gimple
GKD
./a2m.o.gkd
OBJ
obj: ./a2m.o
alignio.c
Gimple
./alignio.c.004t.gimple
GKD
./alignio.o.gkd
OBJ
obj: ./alignio.o
clustal.c
Gimple
./clustal.c.004t.gimple
GKD
./clustal.o.gkd
OBJ
obj: ./clustal.o
file.c
Gimple
./file.c.004t.gimple
GKD
./file.o.gkd
OBJ
obj: ./file.o
getopt.c
Gimple
./getopt.c.004t.gimple
GKD
./getopt.o.gkd
OBJ
obj: ./getopt.o
gki.c
Gimple
./gki.c.004t.gimple
GKD
./gki.o.gkd
OBJ
obj: ./gki.o
hsregex.c
Gimple
./hsregex.c.004t.gimple
GKD
./hsregex.o.gkd
OBJ
obj: ./hsregex.o
msa.c
Gimple
./msa.c.004t.gimple
GKD
./msa.o.gkd
OBJ
obj: ./msa.o
msf.c
Gimple
./msf.c.004t.gimple
GKD
./msf.o.gkd
OBJ
obj: ./msf.o
phylip.c
Gimple
./phylip.c.004t.gimple
GKD
./phylip.o.gkd
OBJ
obj: ./phylip.o
selex.c
Gimple
./selex.c.004t.gimple
GKD
./selex.o.gkd
OBJ
obj: ./selex.o
sqerror.c
Gimple
./sqerror.c.004t.gimple
GKD
./sqerror.o.gkd
OBJ
obj: ./sqerror.o
sqio.c
Gimple
./sqio.c.004t.gimple
GKD
./sqio.o.gkd
OBJ
obj: ./sqio.o
squidcore.c
Gimple
./squidcore.c.004t.gimple
GKD
./squidcore.o.gkd
OBJ
obj: ./squidcore.o
sre_ctype.c
Gimple
./sre_ctype.c.004t.gimple
GKD
./sre_ctype.o.gkd
OBJ
obj: ./sre_ctype.o
sre_random.c
Gimple
./sre_random.c.004t.gimple
GKD
./sre_random.o.gkd
OBJ
obj: ./sre_random.o
sre_string.c
Gimple
./sre_string.c.004t.gimple
GKD
./sre_string.o.gkd
OBJ
obj: ./sre_string.o
ssi.c
Gimple
./ssi.c.004t.gimple
GKD
./ssi.o.gkd
OBJ
obj: ./ssi.o
stockholm.c
Gimple
./stockholm.c.004t.gimple
GKD
./stockholm.o.gkd
OBJ
obj: ./stockholm.o
types.c
Gimple
./types.c.004t.gimple
GKD
./types.o.gkd
OBJ
obj: ./types.o
vectorops.c
Gimple
./vectorops.c.004t.gimple
GKD
./vectorops.o.gkd
OBJ
obj: ./vectorops.o
includes
sre_math.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
./sqfuncs.h
../headers//usr/include/stdlib.h
sre_stack.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./sre_stack.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
wuss.c
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
./sre_stack.h
../headers//usr/include/stdio.h
../headers//usr/include/ctype.h
./sqfuncs.h
compstruct_main.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
a2m.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
alignio.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./msa.h
./sqfuncs.h
./vectorops.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sre_random.h
clustal.c
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
file.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/stdlib.h
getopt.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
./sqfuncs.h
gki.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./gki.h
../headers//usr/include/stdio.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
hsregex.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
msa.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./vectorops.h
msf.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
phylip.c
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/ctype.h
selex.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/stdlib.h
./sqfuncs.h
../headers//usr/include/string.h
./vectorops.h
sqerror.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdlib.h
sqio.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
squidcore.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
sre_ctype.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
sre_random.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
sre_string.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
./sqfuncs.h
./sre_random.h
../headers//usr/include/ctype.h
ssi.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
./squid.h
./ssi.h
./sqfuncs.h
../headers//usr/include/string.h
stockholm.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
types.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
vectorops.c
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/compstruct.1.gz
sindex
compile units
sindex_main.c
Gimple
./sindex_main.c.004t.gimple
GKD
./sindex_main.o.gkd
OBJ
obj: ./sindex_main.o
a2m.c
Gimple
./a2m.c.004t.gimple
GKD
./a2m.o.gkd
OBJ
obj: ./a2m.o
alignio.c
Gimple
./alignio.c.004t.gimple
GKD
./alignio.o.gkd
OBJ
obj: ./alignio.o
clustal.c
Gimple
./clustal.c.004t.gimple
GKD
./clustal.o.gkd
OBJ
obj: ./clustal.o
file.c
Gimple
./file.c.004t.gimple
GKD
./file.o.gkd
OBJ
obj: ./file.o
getopt.c
Gimple
./getopt.c.004t.gimple
GKD
./getopt.o.gkd
OBJ
obj: ./getopt.o
gki.c
Gimple
./gki.c.004t.gimple
GKD
./gki.o.gkd
OBJ
obj: ./gki.o
hsregex.c
Gimple
./hsregex.c.004t.gimple
GKD
./hsregex.o.gkd
OBJ
obj: ./hsregex.o
msa.c
Gimple
./msa.c.004t.gimple
GKD
./msa.o.gkd
OBJ
obj: ./msa.o
msf.c
Gimple
./msf.c.004t.gimple
GKD
./msf.o.gkd
OBJ
obj: ./msf.o
phylip.c
Gimple
./phylip.c.004t.gimple
GKD
./phylip.o.gkd
OBJ
obj: ./phylip.o
selex.c
Gimple
./selex.c.004t.gimple
GKD
./selex.o.gkd
OBJ
obj: ./selex.o
sqerror.c
Gimple
./sqerror.c.004t.gimple
GKD
./sqerror.o.gkd
OBJ
obj: ./sqerror.o
sqio.c
Gimple
./sqio.c.004t.gimple
GKD
./sqio.o.gkd
OBJ
obj: ./sqio.o
squidcore.c
Gimple
./squidcore.c.004t.gimple
GKD
./squidcore.o.gkd
OBJ
obj: ./squidcore.o
sre_ctype.c
Gimple
./sre_ctype.c.004t.gimple
GKD
./sre_ctype.o.gkd
OBJ
obj: ./sre_ctype.o
sre_random.c
Gimple
./sre_random.c.004t.gimple
GKD
./sre_random.o.gkd
OBJ
obj: ./sre_random.o
sre_string.c
Gimple
./sre_string.c.004t.gimple
GKD
./sre_string.o.gkd
OBJ
obj: ./sre_string.o
ssi.c
Gimple
./ssi.c.004t.gimple
GKD
./ssi.o.gkd
OBJ
obj: ./ssi.o
stockholm.c
Gimple
./stockholm.c.004t.gimple
GKD
./stockholm.o.gkd
OBJ
obj: ./stockholm.o
types.c
Gimple
./types.c.004t.gimple
GKD
./types.o.gkd
OBJ
obj: ./types.o
vectorops.c
Gimple
./vectorops.c.004t.gimple
GKD
./vectorops.o.gkd
OBJ
obj: ./vectorops.o
includes
sindex_main.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
a2m.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
alignio.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./msa.h
./sqfuncs.h
./vectorops.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sre_random.h
clustal.c
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
file.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/stdlib.h
getopt.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
./sqfuncs.h
gki.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./gki.h
../headers//usr/include/stdio.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
hsregex.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
msa.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./vectorops.h
msf.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
phylip.c
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/ctype.h
selex.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/stdlib.h
./sqfuncs.h
../headers//usr/include/string.h
./vectorops.h
sqerror.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdlib.h
sqio.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
squidcore.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
sre_ctype.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
sre_random.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
sre_string.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
./sqfuncs.h
./sre_random.h
../headers//usr/include/ctype.h
ssi.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
./squid.h
./ssi.h
./sqfuncs.h
../headers//usr/include/string.h
stockholm.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
types.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
vectorops.c
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/sindex.1.gz
translate
compile units
unassigned
iupac.c
Gimple
./iupac.c.004t.gimple
GKD
./iupac.o.gkd
OBJ
obj: ./iupac.o
revcomp.c
Gimple
./revcomp.c.004t.gimple
GKD
./revcomp.o.gkd
OBJ
obj: ./revcomp.o
shuffle.c
Gimple
./shuffle.c.004t.gimple
GKD
./shuffle.o.gkd
OBJ
obj: ./shuffle.o
sre_stack.c
Gimple
./sre_stack.c.004t.gimple
GKD
./sre_stack.o.gkd
OBJ
obj: ./sre_stack.o
translate.c
Gimple
./translate.c.004t.gimple
GKD
./translate.o.gkd
OBJ
obj: ./translate.o
translate_main.c
Gimple
./translate_main.c.004t.gimple
GKD
./translate_main.o.gkd
OBJ
obj: ./translate_main.o
a2m.c
Gimple
./a2m.c.004t.gimple
GKD
./a2m.o.gkd
OBJ
obj: ./a2m.o
alignio.c
Gimple
./alignio.c.004t.gimple
GKD
./alignio.o.gkd
OBJ
obj: ./alignio.o
clustal.c
Gimple
./clustal.c.004t.gimple
GKD
./clustal.o.gkd
OBJ
obj: ./clustal.o
file.c
Gimple
./file.c.004t.gimple
GKD
./file.o.gkd
OBJ
obj: ./file.o
getopt.c
Gimple
./getopt.c.004t.gimple
GKD
./getopt.o.gkd
OBJ
obj: ./getopt.o
gki.c
Gimple
./gki.c.004t.gimple
GKD
./gki.o.gkd
OBJ
obj: ./gki.o
hsregex.c
Gimple
./hsregex.c.004t.gimple
GKD
./hsregex.o.gkd
OBJ
obj: ./hsregex.o
msa.c
Gimple
./msa.c.004t.gimple
GKD
./msa.o.gkd
OBJ
obj: ./msa.o
msf.c
Gimple
./msf.c.004t.gimple
GKD
./msf.o.gkd
OBJ
obj: ./msf.o
phylip.c
Gimple
./phylip.c.004t.gimple
GKD
./phylip.o.gkd
OBJ
obj: ./phylip.o
selex.c
Gimple
./selex.c.004t.gimple
GKD
./selex.o.gkd
OBJ
obj: ./selex.o
sqerror.c
Gimple
./sqerror.c.004t.gimple
GKD
./sqerror.o.gkd
OBJ
obj: ./sqerror.o
sqio.c
Gimple
./sqio.c.004t.gimple
GKD
./sqio.o.gkd
OBJ
obj: ./sqio.o
squidcore.c
Gimple
./squidcore.c.004t.gimple
GKD
./squidcore.o.gkd
OBJ
obj: ./squidcore.o
sre_ctype.c
Gimple
./sre_ctype.c.004t.gimple
GKD
./sre_ctype.o.gkd
OBJ
obj: ./sre_ctype.o
sre_random.c
Gimple
./sre_random.c.004t.gimple
GKD
./sre_random.o.gkd
OBJ
obj: ./sre_random.o
sre_string.c
Gimple
./sre_string.c.004t.gimple
GKD
./sre_string.o.gkd
OBJ
obj: ./sre_string.o
ssi.c
Gimple
./ssi.c.004t.gimple
GKD
./ssi.o.gkd
OBJ
obj: ./ssi.o
stockholm.c
Gimple
./stockholm.c.004t.gimple
GKD
./stockholm.o.gkd
OBJ
obj: ./stockholm.o
types.c
Gimple
./types.c.004t.gimple
GKD
./types.o.gkd
OBJ
obj: ./types.o
vectorops.c
Gimple
./vectorops.c.004t.gimple
GKD
./vectorops.o.gkd
OBJ
obj: ./vectorops.o
includes
unassigned
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
iupac.c
revcomp.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
./sqfuncs.h
../headers//usr/include/ctype.h
shuffle.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/ctype.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
./sre_random.h
./sqfuncs.h
../headers//usr/include/stdlib.h
./vectorops.h
sre_stack.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./sre_stack.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
translate.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
./squid.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
./sqfuncs.h
translate_main.c
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
a2m.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
alignio.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./msa.h
./sqfuncs.h
./vectorops.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sre_random.h
clustal.c
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
file.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/stdlib.h
getopt.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
./sqfuncs.h
gki.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./gki.h
../headers//usr/include/stdio.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
hsregex.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
msa.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./vectorops.h
msf.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
phylip.c
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/ctype.h
selex.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/stdlib.h
./sqfuncs.h
../headers//usr/include/string.h
./vectorops.h
sqerror.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdlib.h
sqio.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
squidcore.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
sre_ctype.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
sre_random.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
sre_string.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
./sqfuncs.h
./sre_random.h
../headers//usr/include/ctype.h
ssi.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
./squid.h
./ssi.h
./sqfuncs.h
../headers//usr/include/string.h
stockholm.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
types.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
vectorops.c
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
seqsplit
compile units
seqsplit_main.c
Gimple
./seqsplit_main.c.004t.gimple
GKD
./seqsplit_main.o.gkd
OBJ
obj: ./seqsplit_main.o
a2m.c
Gimple
./a2m.c.004t.gimple
GKD
./a2m.o.gkd
OBJ
obj: ./a2m.o
alignio.c
Gimple
./alignio.c.004t.gimple
GKD
./alignio.o.gkd
OBJ
obj: ./alignio.o
clustal.c
Gimple
./clustal.c.004t.gimple
GKD
./clustal.o.gkd
OBJ
obj: ./clustal.o
file.c
Gimple
./file.c.004t.gimple
GKD
./file.o.gkd
OBJ
obj: ./file.o
getopt.c
Gimple
./getopt.c.004t.gimple
GKD
./getopt.o.gkd
OBJ
obj: ./getopt.o
gki.c
Gimple
./gki.c.004t.gimple
GKD
./gki.o.gkd
OBJ
obj: ./gki.o
hsregex.c
Gimple
./hsregex.c.004t.gimple
GKD
./hsregex.o.gkd
OBJ
obj: ./hsregex.o
msa.c
Gimple
./msa.c.004t.gimple
GKD
./msa.o.gkd
OBJ
obj: ./msa.o
msf.c
Gimple
./msf.c.004t.gimple
GKD
./msf.o.gkd
OBJ
obj: ./msf.o
phylip.c
Gimple
./phylip.c.004t.gimple
GKD
./phylip.o.gkd
OBJ
obj: ./phylip.o
selex.c
Gimple
./selex.c.004t.gimple
GKD
./selex.o.gkd
OBJ
obj: ./selex.o
sqerror.c
Gimple
./sqerror.c.004t.gimple
GKD
./sqerror.o.gkd
OBJ
obj: ./sqerror.o
sqio.c
Gimple
./sqio.c.004t.gimple
GKD
./sqio.o.gkd
OBJ
obj: ./sqio.o
squidcore.c
Gimple
./squidcore.c.004t.gimple
GKD
./squidcore.o.gkd
OBJ
obj: ./squidcore.o
sre_ctype.c
Gimple
./sre_ctype.c.004t.gimple
GKD
./sre_ctype.o.gkd
OBJ
obj: ./sre_ctype.o
sre_random.c
Gimple
./sre_random.c.004t.gimple
GKD
./sre_random.o.gkd
OBJ
obj: ./sre_random.o
sre_string.c
Gimple
./sre_string.c.004t.gimple
GKD
./sre_string.o.gkd
OBJ
obj: ./sre_string.o
ssi.c
Gimple
./ssi.c.004t.gimple
GKD
./ssi.o.gkd
OBJ
obj: ./ssi.o
stockholm.c
Gimple
./stockholm.c.004t.gimple
GKD
./stockholm.o.gkd
OBJ
obj: ./stockholm.o
types.c
Gimple
./types.c.004t.gimple
GKD
./types.o.gkd
OBJ
obj: ./types.o
vectorops.c
Gimple
./vectorops.c.004t.gimple
GKD
./vectorops.o.gkd
OBJ
obj: ./vectorops.o
includes
seqsplit_main.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/string.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
./sqfuncs.h
a2m.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
alignio.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./msa.h
./sqfuncs.h
./vectorops.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sre_random.h
clustal.c
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
file.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/stdlib.h
getopt.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
./sqfuncs.h
gki.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./gki.h
../headers//usr/include/stdio.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
hsregex.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
msa.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./vectorops.h
msf.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
phylip.c
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/ctype.h
selex.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/stdlib.h
./sqfuncs.h
../headers//usr/include/string.h
./vectorops.h
sqerror.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdlib.h
sqio.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
squidcore.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
sre_ctype.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
sre_random.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
sre_string.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
./sqfuncs.h
./sre_random.h
../headers//usr/include/ctype.h
ssi.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
./squid.h
./ssi.h
./sqfuncs.h
../headers//usr/include/string.h
stockholm.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
types.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
vectorops.c
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/seqsplit.1.gz
rndspeed
compile units
rndspeed_main.c
Gimple
./rndspeed_main.c.004t.gimple
GKD
./rndspeed_main.o.gkd
OBJ
obj: ./rndspeed_main.o
sre_random.c
Gimple
./sre_random.c.004t.gimple
GKD
./sre_random.o.gkd
OBJ
obj: ./sre_random.o
stopwatch.c
Gimple
./stopwatch.c.004t.gimple
GKD
./stopwatch.o.gkd
OBJ
obj: ./stopwatch.o
includes
rndspeed_main.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/sys/times.h
../headers/../stopwatch.h
../headers//usr/include/stdlib.h
../headers/../sre_random.h
sre_random.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
stopwatch.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/sys/times.h
./stopwatch.h
../headers//usr/include/unistd.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/confname.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
sreformat
compile units
eps.c
Gimple
./eps.c.004t.gimple
GKD
./eps.o.gkd
OBJ
obj: ./eps.o
shuffle.c
Gimple
./shuffle.c.004t.gimple
GKD
./shuffle.o.gkd
OBJ
obj: ./shuffle.o
sre_stack.c
Gimple
./sre_stack.c.004t.gimple
GKD
./sre_stack.o.gkd
OBJ
obj: ./sre_stack.o
wuss.c
Gimple
./wuss.c.004t.gimple
GKD
./wuss.o.gkd
OBJ
obj: ./wuss.o
sreformat_main.c
Gimple
./sreformat_main.c.004t.gimple
GKD
./sreformat_main.o.gkd
OBJ
obj: ./sreformat_main.o
a2m.c
Gimple
./a2m.c.004t.gimple
GKD
./a2m.o.gkd
OBJ
obj: ./a2m.o
alignio.c
Gimple
./alignio.c.004t.gimple
GKD
./alignio.o.gkd
OBJ
obj: ./alignio.o
clustal.c
Gimple
./clustal.c.004t.gimple
GKD
./clustal.o.gkd
OBJ
obj: ./clustal.o
file.c
Gimple
./file.c.004t.gimple
GKD
./file.o.gkd
OBJ
obj: ./file.o
getopt.c
Gimple
./getopt.c.004t.gimple
GKD
./getopt.o.gkd
OBJ
obj: ./getopt.o
gki.c
Gimple
./gki.c.004t.gimple
GKD
./gki.o.gkd
OBJ
obj: ./gki.o
hsregex.c
Gimple
./hsregex.c.004t.gimple
GKD
./hsregex.o.gkd
OBJ
obj: ./hsregex.o
msa.c
Gimple
./msa.c.004t.gimple
GKD
./msa.o.gkd
OBJ
obj: ./msa.o
msf.c
Gimple
./msf.c.004t.gimple
GKD
./msf.o.gkd
OBJ
obj: ./msf.o
phylip.c
Gimple
./phylip.c.004t.gimple
GKD
./phylip.o.gkd
OBJ
obj: ./phylip.o
selex.c
Gimple
./selex.c.004t.gimple
GKD
./selex.o.gkd
OBJ
obj: ./selex.o
sqerror.c
Gimple
./sqerror.c.004t.gimple
GKD
./sqerror.o.gkd
OBJ
obj: ./sqerror.o
sqio.c
Gimple
./sqio.c.004t.gimple
GKD
./sqio.o.gkd
OBJ
obj: ./sqio.o
squidcore.c
Gimple
./squidcore.c.004t.gimple
GKD
./squidcore.o.gkd
OBJ
obj: ./squidcore.o
sre_ctype.c
Gimple
./sre_ctype.c.004t.gimple
GKD
./sre_ctype.o.gkd
OBJ
obj: ./sre_ctype.o
sre_random.c
Gimple
./sre_random.c.004t.gimple
GKD
./sre_random.o.gkd
OBJ
obj: ./sre_random.o
sre_string.c
Gimple
./sre_string.c.004t.gimple
GKD
./sre_string.o.gkd
OBJ
obj: ./sre_string.o
ssi.c
Gimple
./ssi.c.004t.gimple
GKD
./ssi.o.gkd
OBJ
obj: ./ssi.o
stockholm.c
Gimple
./stockholm.c.004t.gimple
GKD
./stockholm.o.gkd
OBJ
obj: ./stockholm.o
types.c
Gimple
./types.c.004t.gimple
GKD
./types.o.gkd
OBJ
obj: ./types.o
vectorops.c
Gimple
./vectorops.c.004t.gimple
GKD
./vectorops.o.gkd
OBJ
obj: ./vectorops.o
includes
eps.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./gki.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
shuffle.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/ctype.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
./sre_random.h
./sqfuncs.h
../headers//usr/include/stdlib.h
./vectorops.h
sre_stack.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./sre_stack.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
wuss.c
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
./sre_stack.h
../headers//usr/include/stdio.h
../headers//usr/include/ctype.h
./sqfuncs.h
sreformat_main.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
a2m.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
alignio.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./msa.h
./sqfuncs.h
./vectorops.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sre_random.h
clustal.c
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
file.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/stdlib.h
getopt.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
./sqfuncs.h
gki.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./gki.h
../headers//usr/include/stdio.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
hsregex.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
msa.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./vectorops.h
msf.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
phylip.c
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/ctype.h
selex.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/stdlib.h
./sqfuncs.h
../headers//usr/include/string.h
./vectorops.h
sqerror.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdlib.h
sqio.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
squidcore.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
sre_ctype.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
sre_random.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
sre_string.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
./sqfuncs.h
./sre_random.h
../headers//usr/include/ctype.h
ssi.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
./squid.h
./ssi.h
./sqfuncs.h
../headers//usr/include/string.h
stockholm.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
types.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
vectorops.c
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/sreformat.1.gz
revcomp
compile units
revcomp.c
Gimple
./revcomp.c.004t.gimple
GKD
./revcomp.o.gkd
OBJ
obj: ./revcomp.o
shuffle.c
Gimple
./shuffle.c.004t.gimple
GKD
./shuffle.o.gkd
OBJ
obj: ./shuffle.o
revcomp_main.c
Gimple
./revcomp_main.c.004t.gimple
GKD
./revcomp_main.o.gkd
OBJ
obj: ./revcomp_main.o
a2m.c
Gimple
./a2m.c.004t.gimple
GKD
./a2m.o.gkd
OBJ
obj: ./a2m.o
alignio.c
Gimple
./alignio.c.004t.gimple
GKD
./alignio.o.gkd
OBJ
obj: ./alignio.o
clustal.c
Gimple
./clustal.c.004t.gimple
GKD
./clustal.o.gkd
OBJ
obj: ./clustal.o
file.c
Gimple
./file.c.004t.gimple
GKD
./file.o.gkd
OBJ
obj: ./file.o
getopt.c
Gimple
./getopt.c.004t.gimple
GKD
./getopt.o.gkd
OBJ
obj: ./getopt.o
gki.c
Gimple
./gki.c.004t.gimple
GKD
./gki.o.gkd
OBJ
obj: ./gki.o
hsregex.c
Gimple
./hsregex.c.004t.gimple
GKD
./hsregex.o.gkd
OBJ
obj: ./hsregex.o
msa.c
Gimple
./msa.c.004t.gimple
GKD
./msa.o.gkd
OBJ
obj: ./msa.o
msf.c
Gimple
./msf.c.004t.gimple
GKD
./msf.o.gkd
OBJ
obj: ./msf.o
phylip.c
Gimple
./phylip.c.004t.gimple
GKD
./phylip.o.gkd
OBJ
obj: ./phylip.o
selex.c
Gimple
./selex.c.004t.gimple
GKD
./selex.o.gkd
OBJ
obj: ./selex.o
sqerror.c
Gimple
./sqerror.c.004t.gimple
GKD
./sqerror.o.gkd
OBJ
obj: ./sqerror.o
sqio.c
Gimple
./sqio.c.004t.gimple
GKD
./sqio.o.gkd
OBJ
obj: ./sqio.o
squidcore.c
Gimple
./squidcore.c.004t.gimple
GKD
./squidcore.o.gkd
OBJ
obj: ./squidcore.o
sre_ctype.c
Gimple
./sre_ctype.c.004t.gimple
GKD
./sre_ctype.o.gkd
OBJ
obj: ./sre_ctype.o
sre_random.c
Gimple
./sre_random.c.004t.gimple
GKD
./sre_random.o.gkd
OBJ
obj: ./sre_random.o
sre_string.c
Gimple
./sre_string.c.004t.gimple
GKD
./sre_string.o.gkd
OBJ
obj: ./sre_string.o
ssi.c
Gimple
./ssi.c.004t.gimple
GKD
./ssi.o.gkd
OBJ
obj: ./ssi.o
stockholm.c
Gimple
./stockholm.c.004t.gimple
GKD
./stockholm.o.gkd
OBJ
obj: ./stockholm.o
types.c
Gimple
./types.c.004t.gimple
GKD
./types.o.gkd
OBJ
obj: ./types.o
vectorops.c
Gimple
./vectorops.c.004t.gimple
GKD
./vectorops.o.gkd
OBJ
obj: ./vectorops.o
includes
revcomp.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
./sqfuncs.h
../headers//usr/include/ctype.h
shuffle.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/ctype.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
./sre_random.h
./sqfuncs.h
../headers//usr/include/stdlib.h
./vectorops.h
revcomp_main.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
a2m.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
alignio.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./msa.h
./sqfuncs.h
./vectorops.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sre_random.h
clustal.c
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
file.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/stdlib.h
getopt.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
./sqfuncs.h
gki.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./gki.h
../headers//usr/include/stdio.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
hsregex.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
msa.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./vectorops.h
msf.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
phylip.c
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/ctype.h
selex.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/stdlib.h
./sqfuncs.h
../headers//usr/include/string.h
./vectorops.h
sqerror.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdlib.h
sqio.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
squidcore.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
sre_ctype.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
sre_random.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
sre_string.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
./sqfuncs.h
./sre_random.h
../headers//usr/include/ctype.h
ssi.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
./squid.h
./ssi.h
./sqfuncs.h
../headers//usr/include/string.h
stockholm.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
types.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
vectorops.c
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/revcomp.1.gz
afetch
compile units
afetch_main.c
Gimple
./afetch_main.c.004t.gimple
GKD
./afetch_main.o.gkd
OBJ
obj: ./afetch_main.o
a2m.c
Gimple
./a2m.c.004t.gimple
GKD
./a2m.o.gkd
OBJ
obj: ./a2m.o
alignio.c
Gimple
./alignio.c.004t.gimple
GKD
./alignio.o.gkd
OBJ
obj: ./alignio.o
clustal.c
Gimple
./clustal.c.004t.gimple
GKD
./clustal.o.gkd
OBJ
obj: ./clustal.o
file.c
Gimple
./file.c.004t.gimple
GKD
./file.o.gkd
OBJ
obj: ./file.o
getopt.c
Gimple
./getopt.c.004t.gimple
GKD
./getopt.o.gkd
OBJ
obj: ./getopt.o
gki.c
Gimple
./gki.c.004t.gimple
GKD
./gki.o.gkd
OBJ
obj: ./gki.o
hsregex.c
Gimple
./hsregex.c.004t.gimple
GKD
./hsregex.o.gkd
OBJ
obj: ./hsregex.o
msa.c
Gimple
./msa.c.004t.gimple
GKD
./msa.o.gkd
OBJ
obj: ./msa.o
msf.c
Gimple
./msf.c.004t.gimple
GKD
./msf.o.gkd
OBJ
obj: ./msf.o
phylip.c
Gimple
./phylip.c.004t.gimple
GKD
./phylip.o.gkd
OBJ
obj: ./phylip.o
selex.c
Gimple
./selex.c.004t.gimple
GKD
./selex.o.gkd
OBJ
obj: ./selex.o
sqerror.c
Gimple
./sqerror.c.004t.gimple
GKD
./sqerror.o.gkd
OBJ
obj: ./sqerror.o
sqio.c
Gimple
./sqio.c.004t.gimple
GKD
./sqio.o.gkd
OBJ
obj: ./sqio.o
squidcore.c
Gimple
./squidcore.c.004t.gimple
GKD
./squidcore.o.gkd
OBJ
obj: ./squidcore.o
sre_ctype.c
Gimple
./sre_ctype.c.004t.gimple
GKD
./sre_ctype.o.gkd
OBJ
obj: ./sre_ctype.o
sre_random.c
Gimple
./sre_random.c.004t.gimple
GKD
./sre_random.o.gkd
OBJ
obj: ./sre_random.o
sre_string.c
Gimple
./sre_string.c.004t.gimple
GKD
./sre_string.o.gkd
OBJ
obj: ./sre_string.o
ssi.c
Gimple
./ssi.c.004t.gimple
GKD
./ssi.o.gkd
OBJ
obj: ./ssi.o
stockholm.c
Gimple
./stockholm.c.004t.gimple
GKD
./stockholm.o.gkd
OBJ
obj: ./stockholm.o
types.c
Gimple
./types.c.004t.gimple
GKD
./types.o.gkd
OBJ
obj: ./types.o
vectorops.c
Gimple
./vectorops.c.004t.gimple
GKD
./vectorops.o.gkd
OBJ
obj: ./vectorops.o
includes
afetch_main.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
a2m.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
alignio.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./msa.h
./sqfuncs.h
./vectorops.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sre_random.h
clustal.c
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
file.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/stdlib.h
getopt.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
./sqfuncs.h
gki.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./gki.h
../headers//usr/include/stdio.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
hsregex.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
msa.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./vectorops.h
msf.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
phylip.c
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/ctype.h
selex.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/stdlib.h
./sqfuncs.h
../headers//usr/include/string.h
./vectorops.h
sqerror.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdlib.h
sqio.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
squidcore.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
sre_ctype.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
sre_random.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
sre_string.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
./sqfuncs.h
./sre_random.h
../headers//usr/include/ctype.h
ssi.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
./squid.h
./ssi.h
./sqfuncs.h
../headers//usr/include/string.h
stockholm.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
types.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
vectorops.c
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/afetch.1.gz
shuffle
compile units
unassigned
iupac.c
Gimple
./iupac.c.004t.gimple
GKD
./iupac.o.gkd
OBJ
obj: ./iupac.o
shuffle.c
Gimple
./shuffle.c.004t.gimple
GKD
./shuffle.o.gkd
OBJ
obj: ./shuffle.o
shuffle_main.c
Gimple
./shuffle_main.c.004t.gimple
GKD
./shuffle_main.o.gkd
OBJ
obj: ./shuffle_main.o
a2m.c
Gimple
./a2m.c.004t.gimple
GKD
./a2m.o.gkd
OBJ
obj: ./a2m.o
alignio.c
Gimple
./alignio.c.004t.gimple
GKD
./alignio.o.gkd
OBJ
obj: ./alignio.o
clustal.c
Gimple
./clustal.c.004t.gimple
GKD
./clustal.o.gkd
OBJ
obj: ./clustal.o
file.c
Gimple
./file.c.004t.gimple
GKD
./file.o.gkd
OBJ
obj: ./file.o
getopt.c
Gimple
./getopt.c.004t.gimple
GKD
./getopt.o.gkd
OBJ
obj: ./getopt.o
gki.c
Gimple
./gki.c.004t.gimple
GKD
./gki.o.gkd
OBJ
obj: ./gki.o
hsregex.c
Gimple
./hsregex.c.004t.gimple
GKD
./hsregex.o.gkd
OBJ
obj: ./hsregex.o
msa.c
Gimple
./msa.c.004t.gimple
GKD
./msa.o.gkd
OBJ
obj: ./msa.o
msf.c
Gimple
./msf.c.004t.gimple
GKD
./msf.o.gkd
OBJ
obj: ./msf.o
phylip.c
Gimple
./phylip.c.004t.gimple
GKD
./phylip.o.gkd
OBJ
obj: ./phylip.o
selex.c
Gimple
./selex.c.004t.gimple
GKD
./selex.o.gkd
OBJ
obj: ./selex.o
sqerror.c
Gimple
./sqerror.c.004t.gimple
GKD
./sqerror.o.gkd
OBJ
obj: ./sqerror.o
sqio.c
Gimple
./sqio.c.004t.gimple
GKD
./sqio.o.gkd
OBJ
obj: ./sqio.o
squidcore.c
Gimple
./squidcore.c.004t.gimple
GKD
./squidcore.o.gkd
OBJ
obj: ./squidcore.o
sre_ctype.c
Gimple
./sre_ctype.c.004t.gimple
GKD
./sre_ctype.o.gkd
OBJ
obj: ./sre_ctype.o
sre_random.c
Gimple
./sre_random.c.004t.gimple
GKD
./sre_random.o.gkd
OBJ
obj: ./sre_random.o
sre_string.c
Gimple
./sre_string.c.004t.gimple
GKD
./sre_string.o.gkd
OBJ
obj: ./sre_string.o
ssi.c
Gimple
./ssi.c.004t.gimple
GKD
./ssi.o.gkd
OBJ
obj: ./ssi.o
stockholm.c
Gimple
./stockholm.c.004t.gimple
GKD
./stockholm.o.gkd
OBJ
obj: ./stockholm.o
types.c
Gimple
./types.c.004t.gimple
GKD
./types.o.gkd
OBJ
obj: ./types.o
vectorops.c
Gimple
./vectorops.c.004t.gimple
GKD
./vectorops.o.gkd
OBJ
obj: ./vectorops.o
includes
unassigned
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
iupac.c
shuffle.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/ctype.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
./sre_random.h
./sqfuncs.h
../headers//usr/include/stdlib.h
./vectorops.h
shuffle_main.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
./squid.h
./gki.h
./ssi.h
./msa.h
a2m.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
alignio.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./msa.h
./sqfuncs.h
./vectorops.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sre_random.h
clustal.c
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
file.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/stdlib.h
getopt.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
./sqfuncs.h
gki.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./gki.h
../headers//usr/include/stdio.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
hsregex.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
msa.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./vectorops.h
msf.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
phylip.c
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/ctype.h
selex.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/stdlib.h
./sqfuncs.h
../headers//usr/include/string.h
./vectorops.h
sqerror.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdlib.h
sqio.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
squidcore.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
sre_ctype.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
sre_random.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
sre_string.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
./sqfuncs.h
./sre_random.h
../headers//usr/include/ctype.h
ssi.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
./squid.h
./ssi.h
./sqfuncs.h
../headers//usr/include/string.h
stockholm.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
types.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
vectorops.c
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/shuffle.1.gz
weight
compile units
aligneval.c
Gimple
./aligneval.c.004t.gimple
GKD
./aligneval.o.gkd
OBJ
obj: ./aligneval.o
cluster.c
Gimple
./cluster.c.004t.gimple
GKD
./cluster.o.gkd
OBJ
obj: ./cluster.o
unassigned
iupac.c
Gimple
./iupac.c.004t.gimple
GKD
./iupac.o.gkd
OBJ
obj: ./iupac.o
sre_math.c
Gimple
./sre_math.c.004t.gimple
GKD
./sre_math.o.gkd
OBJ
obj: ./sre_math.o
sre_stack.c
Gimple
./sre_stack.c.004t.gimple
GKD
./sre_stack.o.gkd
OBJ
obj: ./sre_stack.o
weight.c
Gimple
./weight.c.004t.gimple
GKD
./weight.o.gkd
OBJ
obj: ./weight.o
weight_main.c
Gimple
./weight_main.c.004t.gimple
GKD
./weight_main.o.gkd
OBJ
obj: ./weight_main.o
a2m.c
Gimple
./a2m.c.004t.gimple
GKD
./a2m.o.gkd
OBJ
obj: ./a2m.o
alignio.c
Gimple
./alignio.c.004t.gimple
GKD
./alignio.o.gkd
OBJ
obj: ./alignio.o
clustal.c
Gimple
./clustal.c.004t.gimple
GKD
./clustal.o.gkd
OBJ
obj: ./clustal.o
file.c
Gimple
./file.c.004t.gimple
GKD
./file.o.gkd
OBJ
obj: ./file.o
getopt.c
Gimple
./getopt.c.004t.gimple
GKD
./getopt.o.gkd
OBJ
obj: ./getopt.o
gki.c
Gimple
./gki.c.004t.gimple
GKD
./gki.o.gkd
OBJ
obj: ./gki.o
hsregex.c
Gimple
./hsregex.c.004t.gimple
GKD
./hsregex.o.gkd
OBJ
obj: ./hsregex.o
msa.c
Gimple
./msa.c.004t.gimple
GKD
./msa.o.gkd
OBJ
obj: ./msa.o
msf.c
Gimple
./msf.c.004t.gimple
GKD
./msf.o.gkd
OBJ
obj: ./msf.o
phylip.c
Gimple
./phylip.c.004t.gimple
GKD
./phylip.o.gkd
OBJ
obj: ./phylip.o
selex.c
Gimple
./selex.c.004t.gimple
GKD
./selex.o.gkd
OBJ
obj: ./selex.o
sqerror.c
Gimple
./sqerror.c.004t.gimple
GKD
./sqerror.o.gkd
OBJ
obj: ./sqerror.o
sqio.c
Gimple
./sqio.c.004t.gimple
GKD
./sqio.o.gkd
OBJ
obj: ./sqio.o
squidcore.c
Gimple
./squidcore.c.004t.gimple
GKD
./squidcore.o.gkd
OBJ
obj: ./squidcore.o
sre_ctype.c
Gimple
./sre_ctype.c.004t.gimple
GKD
./sre_ctype.o.gkd
OBJ
obj: ./sre_ctype.o
sre_random.c
Gimple
./sre_random.c.004t.gimple
GKD
./sre_random.o.gkd
OBJ
obj: ./sre_random.o
sre_string.c
Gimple
./sre_string.c.004t.gimple
GKD
./sre_string.o.gkd
OBJ
obj: ./sre_string.o
ssi.c
Gimple
./ssi.c.004t.gimple
GKD
./ssi.o.gkd
OBJ
obj: ./ssi.o
stockholm.c
Gimple
./stockholm.c.004t.gimple
GKD
./stockholm.o.gkd
OBJ
obj: ./stockholm.o
types.c
Gimple
./types.c.004t.gimple
GKD
./types.o.gkd
OBJ
obj: ./types.o
vectorops.c
Gimple
./vectorops.c.004t.gimple
GKD
./vectorops.o.gkd
OBJ
obj: ./vectorops.o
includes
aligneval.c
../headers//usr/include/ctype.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
./sqfuncs.h
./sre_random.h
../headers//usr/include/stdlib.h
cluster.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./msa.h
./sre_stack.h
../headers//usr/include/stdlib.h
./sqfuncs.h
unassigned
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
iupac.c
sre_math.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
./sqfuncs.h
../headers//usr/include/stdlib.h
sre_stack.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./sre_stack.h
../headers//usr/include/stdio.h
../headers//usr/include/stdlib.h
weight.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
./gki.h
./msa.h
./squid.h
../headers//usr/include/stdio.h
./sqfuncs.h
../headers//usr/include/stdlib.h
./vectorops.h
./sre_random.h
weight_main.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
a2m.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
alignio.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./msa.h
./sqfuncs.h
./vectorops.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sre_random.h
clustal.c
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
file.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/stdlib.h
getopt.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
./sqfuncs.h
gki.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./gki.h
../headers//usr/include/stdio.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
hsregex.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/x86_64-linux-gnu/bits/string2.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
msa.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
../headers//usr/include/string.h
./vectorops.h
msf.c
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/string.h
./sqfuncs.h
../headers//usr/include/ctype.h
phylip.c
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/ctype.h
selex.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
../headers//usr/include/stdlib.h
./sqfuncs.h
../headers//usr/include/string.h
./vectorops.h
sqerror.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stdarg.h
../headers//usr/include/stdlib.h
sqio.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
squidcore.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
sre_ctype.c
../headers//usr/include/ctype.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
sre_random.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
../headers//usr/include/stdio.h
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
sre_string.c
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/string.h
../headers//usr/include/stdlib.h
./sqfuncs.h
./sre_random.h
../headers//usr/include/ctype.h
ssi.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/sys/stat.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/stdlib.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
../headers//usr/include/time.h
../headers//usr/include/x86_64-linux-gnu/bits/stat.h
./squid.h
./ssi.h
./sqfuncs.h
../headers//usr/include/string.h
stockholm.c
../headers//usr/include/x86_64-linux-gnu/bits/stdio2.h
../headers//usr/include/x86_64-linux-gnu/bits/string3.h
../headers//usr/include/x86_64-linux-gnu/bits/stdlib-float.h
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/stdio.h
../headers//usr/include/libio.h
./squid.h
./gki.h
./ssi.h
./msa.h
./sqfuncs.h
../headers//usr/include/stdlib.h
types.c
../headers//usr/lib/gcc/x86_64-linux-gnu/4.9/include/stddef.h
../headers//usr/include/x86_64-linux-gnu/bits/types.h
../headers//usr/include/libio.h
./squid.h
../headers//usr/include/stdio.h
../headers//usr/include/string.h
../headers//usr/include/ctype.h
vectorops.c
../headers//usr/include/x86_64-linux-gnu/bits/mathcalls.h
libraries
../libs/lib/x86_64-linux-gnu/libm.so.6
../libs/lib/x86_64-linux-gnu/libc.so.6
manual
../man/weight.1.gz